* jabref like orgmode based solution to bibliography management (not for latex)
@ 2015-05-30 8:20 Xebar Saram
2015-05-30 8:46 ` Vaidheeswaran C
` (2 more replies)
0 siblings, 3 replies; 14+ messages in thread
From: Xebar Saram @ 2015-05-30 8:20 UTC (permalink / raw)
To: org mode
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Hi all
i have been using jabref for the past 2-4 years in my academia work to
manage my reference library. i dont use latex (..its on my TODO list...when
(f ever) i have time..) so for now i just want something to manage my
references. the key things i need to move over from jabref are:
1. easy add references
2. a way to quick filter references (helm bibtex seems like a good solution)
3. filter lists based on tags/keywords (orgmode has that covered)
4. this one is important: a way to quickly export selected references in
word/odf/html based on a pre fixed style (ie Nature, Chicago etc)
anyone uses such a system in emacs/org and can recommend the way to go?
thx!
z
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^ permalink raw reply [flat|nested] 14+ messages in thread* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-05-30 8:20 jabref like orgmode based solution to bibliography management (not for latex) Xebar Saram @ 2015-05-30 8:46 ` Vaidheeswaran C 2015-05-30 9:59 ` Otto Pichlhöfer 2015-05-30 15:36 ` Titus von der Malsburg 2 siblings, 0 replies; 14+ messages in thread From: Vaidheeswaran C @ 2015-05-30 8:46 UTC (permalink / raw) To: emacs-orgmode On Saturday 30 May 2015 01:50 PM, Xebar Saram wrote: > 4. this one is important: a way to quickly export selected references in > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) You may have to move to new citation syntax on my private repo. See http://repo.or.cz/w/org-mode/org-cv.git The example org and odt files are available in this post: http://lists.gnu.org/archive/html/emacs-orgmode/2015-03/msg00451.html The documentation is in ox-jabref.el If you report issues, I will address them promptly. ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-05-30 8:20 jabref like orgmode based solution to bibliography management (not for latex) Xebar Saram 2015-05-30 8:46 ` Vaidheeswaran C @ 2015-05-30 9:59 ` Otto Pichlhöfer 2015-05-30 15:36 ` Titus von der Malsburg 2 siblings, 0 replies; 14+ messages in thread From: Otto Pichlhöfer @ 2015-05-30 9:59 UTC (permalink / raw) To: emacs-orgmode Xebar Saram <zeltakc <at> gmail.com> writes: > 4. this one is important: a way to quickly export selected references in word/odf/html based on a pre fixed style (ie Nature, Chicago etc) You might want to finish up the citations after the paper is exported. Have a look at http://www.docear.org/software/add-ons/docear4word/overview/ Regards, Otto ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-05-30 8:20 jabref like orgmode based solution to bibliography management (not for latex) Xebar Saram 2015-05-30 8:46 ` Vaidheeswaran C 2015-05-30 9:59 ` Otto Pichlhöfer @ 2015-05-30 15:36 ` Titus von der Malsburg 2015-05-30 15:56 ` John Kitchin 2 siblings, 1 reply; 14+ messages in thread From: Titus von der Malsburg @ 2015-05-30 15:36 UTC (permalink / raw) To: Xebar Saram; +Cc: org mode [-- Attachment #1: Type: text/plain, Size: 1629 bytes --] On 2015-05-30 Sat 01:20, Xebar Saram wrote: > Hi all > > i have been using jabref for the past 2-4 years in my academia work to > manage my reference library. i dont use latex (..its on my TODO list...when > (f ever) i have time..) so for now i just want something to manage my > references. the key things i need to move over from jabref are: Author of helm-bibtex here. > 1. easy add references Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX file by hand. BibTeX retrieved from journals is almost always messy and I need to edit it anyway. It’s not too hard, though: I click on BibTeX export on the journal page, the BibTeX file is opened in Emacs, I fix it, and use a command that appends it to my bibliography. However, I think org-ref has tools that do more to support importing new entries and org-ref combines well with helm-bibtex. > 2. a way to quick filter references (helm bibtex seems like a good solution) That’s what helm-bibtex was written to solve. > 3. filter lists based on tags/keywords (orgmode has that covered) In helm-bibtex you can also search for keywords and tags. > 4. this one is important: a way to quickly export selected references in > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) helm-bibtex can generate references in APA style but as far as I can see Chicago style is very similar, so it shouldn’t be hard to add support for that. > anyone uses such a system in emacs/org and can recommend the way to > go? For more details, see: https://github.com/tmalsburg/helm-bibtex Titus [-- Attachment #2: signature.asc --] [-- Type: application/pgp-signature, Size: 472 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-05-30 15:36 ` Titus von der Malsburg @ 2015-05-30 15:56 ` John Kitchin 2015-05-31 10:01 ` Xebar Saram 0 siblings, 1 reply; 14+ messages in thread From: John Kitchin @ 2015-05-30 15:56 UTC (permalink / raw) To: Titus von der Malsburg; +Cc: Xebar Saram, org mode [-- Attachment #1: Type: text/plain, Size: 2149 bytes --] On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de> wrote: > > On 2015-05-30 Sat 01:20, Xebar Saram wrote: > > Hi all > > > > i have been using jabref for the past 2-4 years in my academia work to > > manage my reference library. i dont use latex (..its on my TODO > list...when > > (f ever) i have time..) so for now i just want something to manage my > > references. the key things i need to move over from jabref are: > > Author of helm-bibtex here. > > > 1. easy add references > > Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX > file by hand. BibTeX retrieved from journals is almost always messy and > I need to edit it anyway. It’s not too hard, though: I click on BibTeX > export on the journal page, the BibTeX file is opened in Emacs, I fix > it, and use a command that appends it to my bibliography. > > However, I think org-ref has tools that do more to support importing new > entries and org-ref combines well with helm-bibtex. Org-ref has doi-utils that let you add bibtex entries and download PDFs from a doi or crossref query. > > > 2. a way to quick filter references (helm bibtex seems like a good > solution) > > That’s what helm-bibtex was written to solve. > > > 3. filter lists based on tags/keywords (orgmode has that covered) > > In helm-bibtex you can also search for keywords and tags. > > > 4. this one is important: a way to quickly export selected references in > > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) > > helm-bibtex can generate references in APA style but as far as I can see > Chicago style is very similar, so it shouldn’t be hard to add support > for that. > > > anyone uses such a system in emacs/org and can recommend the way to > > go? > > For more details, see: https://github.com/tmalsburg/helm-bibtex > > Titus > > -- John ----------------------------------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu [-- Attachment #2: Type: text/html, Size: 2857 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-05-30 15:56 ` John Kitchin @ 2015-05-31 10:01 ` Xebar Saram 2015-05-31 12:43 ` John Kitchin 2015-05-31 16:23 ` Titus von der Malsburg 0 siblings, 2 replies; 14+ messages in thread From: Xebar Saram @ 2015-05-31 10:01 UTC (permalink / raw) To: John Kitchin; +Cc: org mode, Titus von der Malsburg [-- Attachment #1: Type: text/plain, Size: 2617 bytes --] Thanks so much everyone for these great replies. i will investigate this further today and let everyone know how im going with my transition :) thanks again PS: Titus, do you think that the helm-bibtex APA style reference list could be user customizable in the future? Z. On Sat, May 30, 2015 at 6:56 PM, John Kitchin <jkitchin@andrew.cmu.edu> wrote: > > > On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de> > wrote: > >> >> On 2015-05-30 Sat 01:20, Xebar Saram wrote: >> > Hi all >> > >> > i have been using jabref for the past 2-4 years in my academia work to >> > manage my reference library. i dont use latex (..its on my TODO >> list...when >> > (f ever) i have time..) so for now i just want something to manage my >> > references. the key things i need to move over from jabref are: >> >> Author of helm-bibtex here. >> >> > 1. easy add references >> >> Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX >> file by hand. BibTeX retrieved from journals is almost always messy and >> I need to edit it anyway. It’s not too hard, though: I click on BibTeX >> export on the journal page, the BibTeX file is opened in Emacs, I fix >> it, and use a command that appends it to my bibliography. >> >> However, I think org-ref has tools that do more to support importing new >> entries and org-ref combines well with helm-bibtex. > > > Org-ref has doi-utils that let you add bibtex entries and download PDFs > from a doi or crossref query. > > >> >> > 2. a way to quick filter references (helm bibtex seems like a good >> solution) >> >> That’s what helm-bibtex was written to solve. >> >> > 3. filter lists based on tags/keywords (orgmode has that covered) >> >> In helm-bibtex you can also search for keywords and tags. >> >> > 4. this one is important: a way to quickly export selected references in >> > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) >> >> helm-bibtex can generate references in APA style but as far as I can see >> Chicago style is very similar, so it shouldn’t be hard to add support >> for that. >> >> > anyone uses such a system in emacs/org and can recommend the way to >> > go? >> >> For more details, see: https://github.com/tmalsburg/helm-bibtex >> >> Titus >> >> > > -- > John > > ----------------------------------- > Professor John Kitchin > Doherty Hall A207F > Department of Chemical Engineering > Carnegie Mellon University > Pittsburgh, PA 15213 > 412-268-7803 > @johnkitchin > http://kitchingroup.cheme.cmu.edu > > > [-- Attachment #2: Type: text/html, Size: 3807 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-05-31 10:01 ` Xebar Saram @ 2015-05-31 12:43 ` John Kitchin 2015-05-31 16:23 ` Titus von der Malsburg 1 sibling, 0 replies; 14+ messages in thread From: John Kitchin @ 2015-05-31 12:43 UTC (permalink / raw) To: Xebar Saram; +Cc: org mode, Titus von der Malsburg [-- Attachment #1: Type: text/plain, Size: 3231 bytes --] Org-ref also has some customizable formatting. It is pretty basic but customizable. On Sunday, May 31, 2015, Xebar Saram <zeltakc@gmail.com> wrote: > Thanks so much everyone for these great replies. i will investigate this > further today and let everyone know how im going with my transition :) > > thanks again > > PS: Titus, do you think that the helm-bibtex APA style reference list > could be user customizable in the future? > > Z. > > On Sat, May 30, 2015 at 6:56 PM, John Kitchin <jkitchin@andrew.cmu.edu > <javascript:_e(%7B%7D,'cvml','jkitchin@andrew.cmu.edu');>> wrote: > >> >> >> On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de >> <javascript:_e(%7B%7D,'cvml','malsburg@posteo.de');>> wrote: >> >>> >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote: >>> > Hi all >>> > >>> > i have been using jabref for the past 2-4 years in my academia work to >>> > manage my reference library. i dont use latex (..its on my TODO >>> list...when >>> > (f ever) i have time..) so for now i just want something to manage my >>> > references. the key things i need to move over from jabref are: >>> >>> Author of helm-bibtex here. >>> >>> > 1. easy add references >>> >>> Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX >>> file by hand. BibTeX retrieved from journals is almost always messy and >>> I need to edit it anyway. It’s not too hard, though: I click on BibTeX >>> export on the journal page, the BibTeX file is opened in Emacs, I fix >>> it, and use a command that appends it to my bibliography. >>> >>> However, I think org-ref has tools that do more to support importing new >>> entries and org-ref combines well with helm-bibtex. >> >> >> Org-ref has doi-utils that let you add bibtex entries and download PDFs >> from a doi or crossref query. >> >> >>> >>> > 2. a way to quick filter references (helm bibtex seems like a good >>> solution) >>> >>> That’s what helm-bibtex was written to solve. >>> >>> > 3. filter lists based on tags/keywords (orgmode has that covered) >>> >>> In helm-bibtex you can also search for keywords and tags. >>> >>> > 4. this one is important: a way to quickly export selected references >>> in >>> > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) >>> >>> helm-bibtex can generate references in APA style but as far as I can see >>> Chicago style is very similar, so it shouldn’t be hard to add support >>> for that. >>> >>> > anyone uses such a system in emacs/org and can recommend the way to >>> > go? >>> >>> For more details, see: https://github.com/tmalsburg/helm-bibtex >>> >>> Titus >>> >>> >> >> -- >> John >> >> ----------------------------------- >> Professor John Kitchin >> Doherty Hall A207F >> Department of Chemical Engineering >> Carnegie Mellon University >> Pittsburgh, PA 15213 >> 412-268-7803 >> @johnkitchin >> http://kitchingroup.cheme.cmu.edu >> >> >> > -- John ----------------------------------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu [-- Attachment #2: Type: text/html, Size: 4593 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-05-31 10:01 ` Xebar Saram 2015-05-31 12:43 ` John Kitchin @ 2015-05-31 16:23 ` Titus von der Malsburg 2015-12-05 12:17 ` Xebar Saram 1 sibling, 1 reply; 14+ messages in thread From: Titus von der Malsburg @ 2015-05-31 16:23 UTC (permalink / raw) To: Xebar Saram; +Cc: org mode, John Kitchin [-- Attachment #1: Type: text/plain, Size: 2980 bytes --] On 2015-05-31 Sun 03:01, Xebar Saram wrote: > Thanks so much everyone for these great replies. i will investigate this > further today and let everyone know how im going with my transition :) > > thanks again > > PS: Titus, do you think that the helm-bibtex APA style reference list > could be user customizable in the future? Depends on what you mean by customizable. If you mean a customization option to allows you to replace the function for APA formatting with another function, then yes that would definitely make sense. Titus > > Z. > > On Sat, May 30, 2015 at 6:56 PM, John Kitchin <jkitchin@andrew.cmu.edu> > wrote: > >> >> >> On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de> >> wrote: >> >>> >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote: >>> > Hi all >>> > >>> > i have been using jabref for the past 2-4 years in my academia work to >>> > manage my reference library. i dont use latex (..its on my TODO >>> list...when >>> > (f ever) i have time..) so for now i just want something to manage my >>> > references. the key things i need to move over from jabref are: >>> >>> Author of helm-bibtex here. >>> >>> > 1. easy add references >>> >>> Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX >>> file by hand. BibTeX retrieved from journals is almost always messy and >>> I need to edit it anyway. It’s not too hard, though: I click on BibTeX >>> export on the journal page, the BibTeX file is opened in Emacs, I fix >>> it, and use a command that appends it to my bibliography. >>> >>> However, I think org-ref has tools that do more to support importing new >>> entries and org-ref combines well with helm-bibtex. >> >> >> Org-ref has doi-utils that let you add bibtex entries and download PDFs >> from a doi or crossref query. >> >> >>> >>> > 2. a way to quick filter references (helm bibtex seems like a good >>> solution) >>> >>> That’s what helm-bibtex was written to solve. >>> >>> > 3. filter lists based on tags/keywords (orgmode has that covered) >>> >>> In helm-bibtex you can also search for keywords and tags. >>> >>> > 4. this one is important: a way to quickly export selected references in >>> > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) >>> >>> helm-bibtex can generate references in APA style but as far as I can see >>> Chicago style is very similar, so it shouldn’t be hard to add support >>> for that. >>> >>> > anyone uses such a system in emacs/org and can recommend the way to >>> > go? >>> >>> For more details, see: https://github.com/tmalsburg/helm-bibtex >>> >>> Titus >>> >>> >> >> -- >> John >> >> ----------------------------------- >> Professor John Kitchin >> Doherty Hall A207F >> Department of Chemical Engineering >> Carnegie Mellon University >> Pittsburgh, PA 15213 >> 412-268-7803 >> @johnkitchin >> http://kitchingroup.cheme.cmu.edu >> >> >> [-- Attachment #2: signature.asc --] [-- Type: application/pgp-signature, Size: 472 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-05-31 16:23 ` Titus von der Malsburg @ 2015-12-05 12:17 ` Xebar Saram 2015-12-05 13:05 ` John Kitchin 0 siblings, 1 reply; 14+ messages in thread From: Xebar Saram @ 2015-12-05 12:17 UTC (permalink / raw) To: Titus von der Malsburg; +Cc: org mode [-- Attachment #1: Type: text/plain, Size: 4398 bytes --] Hi again Titus and list so the semester is finally nearing the end which means i finally have some time (and a life :)) to get back to what i partially started a few months ago. i have a question regarding Predefined searches. i have a search that works well for searching papers i authored. i am thinking of moving towards 2 bib files instead of 1 big one, that is one for my papers and one for the rest (any disadvantages of using 2 bib files?). i want to add in the Predefined search to only draw from my file (mypaper.bib), even though in the default helm-bibtex sources it will have 2 inputs. is such a thing possible? this is how a current search i have looks like #+BEGIN_SRC emacs-lisp :results none ;; Define helm-search with predefined search expression: (defun helm-bibtex-ikloog-publications () "Search BibTeX entries authored by me" (interactive) (helm :sources '(helm-source-bibtex) :full-frame t :input "kloog !unpublished !prep " :candidate-number-limit 500)) #+END_SRC how does one add the specific .bib file filter? best Z On Sun, May 31, 2015 at 7:23 PM, Titus von der Malsburg <malsburg@posteo.de> wrote: > > On 2015-05-31 Sun 03:01, Xebar Saram wrote: > > Thanks so much everyone for these great replies. i will investigate this > > further today and let everyone know how im going with my transition :) > > > > thanks again > > > > PS: Titus, do you think that the helm-bibtex APA style reference list > > could be user customizable in the future? > > Depends on what you mean by customizable. If you mean a customization > option to allows you to replace the function for APA formatting with > another function, then yes that would definitely make sense. > > Titus > > > > > Z. > > > > On Sat, May 30, 2015 at 6:56 PM, John Kitchin <jkitchin@andrew.cmu.edu> > > wrote: > > > >> > >> > >> On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de> > >> wrote: > >> > >>> > >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote: > >>> > Hi all > >>> > > >>> > i have been using jabref for the past 2-4 years in my academia work > to > >>> > manage my reference library. i dont use latex (..its on my TODO > >>> list...when > >>> > (f ever) i have time..) so for now i just want something to manage my > >>> > references. the key things i need to move over from jabref are: > >>> > >>> Author of helm-bibtex here. > >>> > >>> > 1. easy add references > >>> > >>> Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX > >>> file by hand. BibTeX retrieved from journals is almost always messy > and > >>> I need to edit it anyway. It’s not too hard, though: I click on BibTeX > >>> export on the journal page, the BibTeX file is opened in Emacs, I fix > >>> it, and use a command that appends it to my bibliography. > >>> > >>> However, I think org-ref has tools that do more to support importing > new > >>> entries and org-ref combines well with helm-bibtex. > >> > >> > >> Org-ref has doi-utils that let you add bibtex entries and download PDFs > >> from a doi or crossref query. > >> > >> > >>> > >>> > 2. a way to quick filter references (helm bibtex seems like a good > >>> solution) > >>> > >>> That’s what helm-bibtex was written to solve. > >>> > >>> > 3. filter lists based on tags/keywords (orgmode has that covered) > >>> > >>> In helm-bibtex you can also search for keywords and tags. > >>> > >>> > 4. this one is important: a way to quickly export selected > references in > >>> > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) > >>> > >>> helm-bibtex can generate references in APA style but as far as I can > see > >>> Chicago style is very similar, so it shouldn’t be hard to add support > >>> for that. > >>> > >>> > anyone uses such a system in emacs/org and can recommend the way to > >>> > go? > >>> > >>> For more details, see: https://github.com/tmalsburg/helm-bibtex > >>> > >>> Titus > >>> > >>> > >> > >> -- > >> John > >> > >> ----------------------------------- > >> Professor John Kitchin > >> Doherty Hall A207F > >> Department of Chemical Engineering > >> Carnegie Mellon University > >> Pittsburgh, PA 15213 > >> 412-268-7803 > >> @johnkitchin > >> http://kitchingroup.cheme.cmu.edu > >> > >> > >> > > [-- Attachment #2: Type: text/html, Size: 6839 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-12-05 12:17 ` Xebar Saram @ 2015-12-05 13:05 ` John Kitchin 2015-12-05 13:17 ` Xebar Saram 0 siblings, 1 reply; 14+ messages in thread From: John Kitchin @ 2015-12-05 13:05 UTC (permalink / raw) To: Xebar Saram; +Cc: org mode, Titus von der Malsburg [-- Attachment #1: Type: text/plain, Size: 5233 bytes --] Try (untested) (defun helm-bibtex-ikloog-publications () "Search BibTeX entries authored by me" (interactive) (let ((helm-bibtex-bibliography "your special bibfile")) (helm :sources '(helm-source-bibtex) :full-frame t :input "kloog !unpublished !prep " :candidate-number-limit 500))) John ----------------------------------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Sat, Dec 5, 2015 at 7:17 AM, Xebar Saram <zeltakc@gmail.com> wrote: > Hi again Titus and list > > so the semester is finally nearing the end which means i finally have some > time (and a life :)) to get back to what i partially started a few months > ago. > > i have a question regarding Predefined searches. i have a search that > works well for searching papers i authored. > i am thinking of moving towards 2 bib files instead of 1 big one, that is > one for my papers and one for the rest (any disadvantages of using 2 bib > files?). > i want to add in the Predefined search to only draw from my file (mypaper.bib), > even though in the default helm-bibtex sources it will have 2 inputs. is > such a thing possible? > > this is how a current search i have looks like > > #+BEGIN_SRC emacs-lisp :results none > > ;; Define helm-search with predefined search expression: > (defun helm-bibtex-ikloog-publications () > "Search BibTeX entries authored by me" > (interactive) > (helm :sources '(helm-source-bibtex) > :full-frame t > :input "kloog !unpublished !prep " > :candidate-number-limit 500)) > #+END_SRC > > how does one add the specific .bib file filter? > > best > > Z > > On Sun, May 31, 2015 at 7:23 PM, Titus von der Malsburg < > malsburg@posteo.de> wrote: > >> >> On 2015-05-31 Sun 03:01, Xebar Saram wrote: >> > Thanks so much everyone for these great replies. i will investigate this >> > further today and let everyone know how im going with my transition :) >> > >> > thanks again >> > >> > PS: Titus, do you think that the helm-bibtex APA style reference list >> > could be user customizable in the future? >> >> Depends on what you mean by customizable. If you mean a customization >> option to allows you to replace the function for APA formatting with >> another function, then yes that would definitely make sense. >> >> Titus >> >> > >> > Z. >> > >> > On Sat, May 30, 2015 at 6:56 PM, John Kitchin <jkitchin@andrew.cmu.edu> >> > wrote: >> > >> >> >> >> >> >> On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de> >> >> wrote: >> >> >> >>> >> >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote: >> >>> > Hi all >> >>> > >> >>> > i have been using jabref for the past 2-4 years in my academia work >> to >> >>> > manage my reference library. i dont use latex (..its on my TODO >> >>> list...when >> >>> > (f ever) i have time..) so for now i just want something to manage >> my >> >>> > references. the key things i need to move over from jabref are: >> >>> >> >>> Author of helm-bibtex here. >> >>> >> >>> > 1. easy add references >> >>> >> >>> Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX >> >>> file by hand. BibTeX retrieved from journals is almost always messy >> and >> >>> I need to edit it anyway. It’s not too hard, though: I click on >> BibTeX >> >>> export on the journal page, the BibTeX file is opened in Emacs, I fix >> >>> it, and use a command that appends it to my bibliography. >> >>> >> >>> However, I think org-ref has tools that do more to support importing >> new >> >>> entries and org-ref combines well with helm-bibtex. >> >> >> >> >> >> Org-ref has doi-utils that let you add bibtex entries and download PDFs >> >> from a doi or crossref query. >> >> >> >> >> >>> >> >>> > 2. a way to quick filter references (helm bibtex seems like a good >> >>> solution) >> >>> >> >>> That’s what helm-bibtex was written to solve. >> >>> >> >>> > 3. filter lists based on tags/keywords (orgmode has that covered) >> >>> >> >>> In helm-bibtex you can also search for keywords and tags. >> >>> >> >>> > 4. this one is important: a way to quickly export selected >> references in >> >>> > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) >> >>> >> >>> helm-bibtex can generate references in APA style but as far as I can >> see >> >>> Chicago style is very similar, so it shouldn’t be hard to add support >> >>> for that. >> >>> >> >>> > anyone uses such a system in emacs/org and can recommend the way to >> >>> > go? >> >>> >> >>> For more details, see: https://github.com/tmalsburg/helm-bibtex >> >>> >> >>> Titus >> >>> >> >>> >> >> >> >> -- >> >> John >> >> >> >> ----------------------------------- >> >> Professor John Kitchin >> >> Doherty Hall A207F >> >> Department of Chemical Engineering >> >> Carnegie Mellon University >> >> Pittsburgh, PA 15213 >> >> 412-268-7803 >> >> @johnkitchin >> >> http://kitchingroup.cheme.cmu.edu >> >> >> >> >> >> >> >> > [-- Attachment #2: Type: text/html, Size: 8027 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-12-05 13:05 ` John Kitchin @ 2015-12-05 13:17 ` Xebar Saram 2015-12-05 13:31 ` John Kitchin 0 siblings, 1 reply; 14+ messages in thread From: Xebar Saram @ 2015-12-05 13:17 UTC (permalink / raw) To: John Kitchin; +Cc: org mode, Titus von der Malsburg [-- Attachment #1: Type: text/plain, Size: 5788 bytes --] Hi John Thanks for the quick answer. this does seem to work but as a side effect seems to break the TAB key to select action the message window shows: helm-select-nth-action: Nothing is selected No Actions available [8 times] thx again Z On Sat, Dec 5, 2015 at 3:05 PM, John Kitchin <jkitchin@andrew.cmu.edu> wrote: > Try (untested) > > (defun helm-bibtex-ikloog-publications () > "Search BibTeX entries authored by me" > (interactive) > (let ((helm-bibtex-bibliography "your special bibfile")) > (helm :sources '(helm-source-bibtex) > :full-frame t > :input "kloog !unpublished !prep " > :candidate-number-limit 500))) > > > > John > > ----------------------------------- > Professor John Kitchin > Doherty Hall A207F > Department of Chemical Engineering > Carnegie Mellon University > Pittsburgh, PA 15213 > 412-268-7803 > @johnkitchin > http://kitchingroup.cheme.cmu.edu > > > On Sat, Dec 5, 2015 at 7:17 AM, Xebar Saram <zeltakc@gmail.com> wrote: > >> Hi again Titus and list >> >> so the semester is finally nearing the end which means i finally have >> some time (and a life :)) to get back to what i partially started a few >> months ago. >> >> i have a question regarding Predefined searches. i have a search that >> works well for searching papers i authored. >> i am thinking of moving towards 2 bib files instead of 1 big one, that is >> one for my papers and one for the rest (any disadvantages of using 2 bib >> files?). >> i want to add in the Predefined search to only draw from my file (mypaper.bib), >> even though in the default helm-bibtex sources it will have 2 inputs. is >> such a thing possible? >> >> this is how a current search i have looks like >> >> #+BEGIN_SRC emacs-lisp :results none >> >> ;; Define helm-search with predefined search expression: >> (defun helm-bibtex-ikloog-publications () >> "Search BibTeX entries authored by me" >> (interactive) >> (helm :sources '(helm-source-bibtex) >> :full-frame t >> :input "kloog !unpublished !prep " >> :candidate-number-limit 500)) >> #+END_SRC >> >> how does one add the specific .bib file filter? >> >> best >> >> Z >> >> On Sun, May 31, 2015 at 7:23 PM, Titus von der Malsburg < >> malsburg@posteo.de> wrote: >> >>> >>> On 2015-05-31 Sun 03:01, Xebar Saram wrote: >>> > Thanks so much everyone for these great replies. i will investigate >>> this >>> > further today and let everyone know how im going with my transition :) >>> > >>> > thanks again >>> > >>> > PS: Titus, do you think that the helm-bibtex APA style reference list >>> > could be user customizable in the future? >>> >>> Depends on what you mean by customizable. If you mean a customization >>> option to allows you to replace the function for APA formatting with >>> another function, then yes that would definitely make sense. >>> >>> Titus >>> >>> > >>> > Z. >>> > >>> > On Sat, May 30, 2015 at 6:56 PM, John Kitchin <jkitchin@andrew.cmu.edu >>> > >>> > wrote: >>> > >>> >> >>> >> >>> >> On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de >>> > >>> >> wrote: >>> >> >>> >>> >>> >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote: >>> >>> > Hi all >>> >>> > >>> >>> > i have been using jabref for the past 2-4 years in my academia >>> work to >>> >>> > manage my reference library. i dont use latex (..its on my TODO >>> >>> list...when >>> >>> > (f ever) i have time..) so for now i just want something to manage >>> my >>> >>> > references. the key things i need to move over from jabref are: >>> >>> >>> >>> Author of helm-bibtex here. >>> >>> >>> >>> > 1. easy add references >>> >>> >>> >>> Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX >>> >>> file by hand. BibTeX retrieved from journals is almost always messy >>> and >>> >>> I need to edit it anyway. It’s not too hard, though: I click on >>> BibTeX >>> >>> export on the journal page, the BibTeX file is opened in Emacs, I fix >>> >>> it, and use a command that appends it to my bibliography. >>> >>> >>> >>> However, I think org-ref has tools that do more to support importing >>> new >>> >>> entries and org-ref combines well with helm-bibtex. >>> >> >>> >> >>> >> Org-ref has doi-utils that let you add bibtex entries and download >>> PDFs >>> >> from a doi or crossref query. >>> >> >>> >> >>> >>> >>> >>> > 2. a way to quick filter references (helm bibtex seems like a good >>> >>> solution) >>> >>> >>> >>> That’s what helm-bibtex was written to solve. >>> >>> >>> >>> > 3. filter lists based on tags/keywords (orgmode has that covered) >>> >>> >>> >>> In helm-bibtex you can also search for keywords and tags. >>> >>> >>> >>> > 4. this one is important: a way to quickly export selected >>> references in >>> >>> > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) >>> >>> >>> >>> helm-bibtex can generate references in APA style but as far as I can >>> see >>> >>> Chicago style is very similar, so it shouldn’t be hard to add support >>> >>> for that. >>> >>> >>> >>> > anyone uses such a system in emacs/org and can recommend the way to >>> >>> > go? >>> >>> >>> >>> For more details, see: https://github.com/tmalsburg/helm-bibtex >>> >>> >>> >>> Titus >>> >>> >>> >>> >>> >> >>> >> -- >>> >> John >>> >> >>> >> ----------------------------------- >>> >> Professor John Kitchin >>> >> Doherty Hall A207F >>> >> Department of Chemical Engineering >>> >> Carnegie Mellon University >>> >> Pittsburgh, PA 15213 >>> >> 412-268-7803 >>> >> @johnkitchin >>> >> http://kitchingroup.cheme.cmu.edu >>> >> >>> >> >>> >> >>> >>> >> > [-- Attachment #2: Type: text/html, Size: 8891 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-12-05 13:17 ` Xebar Saram @ 2015-12-05 13:31 ` John Kitchin 2015-12-05 18:04 ` Titus von der Malsburg 0 siblings, 1 reply; 14+ messages in thread From: John Kitchin @ 2015-12-05 13:31 UTC (permalink / raw) To: Xebar Saram; +Cc: org mode, Titus von der Malsburg I cannot reproduce that, and it shouldn't have any effect. Maybe something else is going on. > > Thanks for the quick answer. this does seem to work but as a side effect > seems to break the TAB key to select action > the message window shows: > > helm-select-nth-action: Nothing is selected > No Actions available [8 times] > > thx again > > Z > > On Sat, Dec 5, 2015 at 3:05 PM, John Kitchin <jkitchin@andrew.cmu.edu> > wrote: > >> Try (untested) >> >> >> >> >> >> John >> >> ----------------------------------- >> Professor John Kitchin >> Doherty Hall A207F >> Department of Chemical Engineering >> Carnegie Mellon University >> Pittsburgh, PA 15213 >> 412-268-7803 >> @johnkitchin >> http://kitchingroup.cheme.cmu.edu >> >> >> On Sat, Dec 5, 2015 at 7:17 AM, Xebar Saram <zeltakc@gmail.com> wrote: >> >>> Hi again Titus and list >>> >>> so the semester is finally nearing the end which means i finally have >>> some time (and a life :)) to get back to what i partially started a few >>> months ago. >>> >>> i have a question regarding Predefined searches. i have a search that >>> works well for searching papers i authored. >>> i am thinking of moving towards 2 bib files instead of 1 big one, that is >>> one for my papers and one for the rest (any disadvantages of using 2 bib >>> files?). >>> i want to add in the Predefined search to only draw from my file (mypaper.bib), >>> even though in the default helm-bibtex sources it will have 2 inputs. is >>> such a thing possible? >>> >>> this is how a current search i have looks like >>> >>> #+BEGIN_SRC emacs-lisp :results none >>> >>> ;; Define helm-search with predefined search expression: >>> (defun helm-bibtex-ikloog-publications () >>> "Search BibTeX entries authored by me" >>> (interactive) >>> (helm :sources '(helm-source-bibtex) >>> :full-frame t >>> :input "kloog !unpublished !prep " >>> :candidate-number-limit 500)) >>> #+END_SRC >>> >>> how does one add the specific .bib file filter? >>> >>> best >>> >>> Z >>> >>> On Sun, May 31, 2015 at 7:23 PM, Titus von der Malsburg < >>> malsburg@posteo.de> wrote: >>> >>>> >>>> On 2015-05-31 Sun 03:01, Xebar Saram wrote: >>>> > Thanks so much everyone for these great replies. i will investigate >>>> this >>>> > further today and let everyone know how im going with my transition :) >>>> > >>>> > thanks again >>>> > >>>> > PS: Titus, do you think that the helm-bibtex APA style reference list >>>> > could be user customizable in the future? >>>> >>>> Depends on what you mean by customizable. If you mean a customization >>>> option to allows you to replace the function for APA formatting with >>>> another function, then yes that would definitely make sense. >>>> >>>> Titus >>>> >>>> > >>>> > Z. >>>> > >>>> > On Sat, May 30, 2015 at 6:56 PM, John Kitchin <jkitchin@andrew.cmu.edu >>>> > >>>> > wrote: >>>> > >>>> >> >>>> >> >>>> >> On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de >>>> > >>>> >> wrote: >>>> >> >>>> >>> >>>> >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote: >>>> >>> > Hi all >>>> >>> > >>>> >>> > i have been using jabref for the past 2-4 years in my academia >>>> work to >>>> >>> > manage my reference library. i dont use latex (..its on my TODO >>>> >>> list...when >>>> >>> > (f ever) i have time..) so for now i just want something to manage >>>> my >>>> >>> > references. the key things i need to move over from jabref are: >>>> >>> >>>> >>> Author of helm-bibtex here. >>>> >>> >>>> >>> > 1. easy add references >>>> >>> >>>> >>> Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX >>>> >>> file by hand. BibTeX retrieved from journals is almost always messy >>>> and >>>> >>> I need to edit it anyway. It’s not too hard, though: I click on >>>> BibTeX >>>> >>> export on the journal page, the BibTeX file is opened in Emacs, I fix >>>> >>> it, and use a command that appends it to my bibliography. >>>> >>> >>>> >>> However, I think org-ref has tools that do more to support importing >>>> new >>>> >>> entries and org-ref combines well with helm-bibtex. >>>> >> >>>> >> >>>> >> Org-ref has doi-utils that let you add bibtex entries and download >>>> PDFs >>>> >> from a doi or crossref query. >>>> >> >>>> >> >>>> >>> >>>> >>> > 2. a way to quick filter references (helm bibtex seems like a good >>>> >>> solution) >>>> >>> >>>> >>> That’s what helm-bibtex was written to solve. >>>> >>> >>>> >>> > 3. filter lists based on tags/keywords (orgmode has that covered) >>>> >>> >>>> >>> In helm-bibtex you can also search for keywords and tags. >>>> >>> >>>> >>> > 4. this one is important: a way to quickly export selected >>>> references in >>>> >>> > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) >>>> >>> >>>> >>> helm-bibtex can generate references in APA style but as far as I can >>>> see >>>> >>> Chicago style is very similar, so it shouldn’t be hard to add support >>>> >>> for that. >>>> >>> >>>> >>> > anyone uses such a system in emacs/org and can recommend the way to >>>> >>> > go? >>>> >>> >>>> >>> For more details, see: https://github.com/tmalsburg/helm-bibtex >>>> >>> >>>> >>> Titus >>>> >>> >>>> >>> >>>> >> >>>> >> -- >>>> >> John >>>> >> >>>> >> ----------------------------------- >>>> >> Professor John Kitchin >>>> >> Doherty Hall A207F >>>> >> Department of Chemical Engineering >>>> >> Carnegie Mellon University >>>> >> Pittsburgh, PA 15213 >>>> >> 412-268-7803 >>>> >> @johnkitchin >>>> >> http://kitchingroup.cheme.cmu.edu >>>> >> >>>> >> >>>> >> >>>> >>>> >>> >> -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-12-05 13:31 ` John Kitchin @ 2015-12-05 18:04 ` Titus von der Malsburg 2015-12-05 18:28 ` Xebar Saram 0 siblings, 1 reply; 14+ messages in thread From: Titus von der Malsburg @ 2015-12-05 18:04 UTC (permalink / raw) To: John Kitchin; +Cc: Xebar Saram, org mode [-- Attachment #1: Type: text/plain, Size: 6645 bytes --] John’s code should do the trick. I don’t see how this could possibly cause your problems with the action menu. The change should be completely transparent for Helm. Regarding your other question: I don’t see any disadvantages of using several BibTeX files but I also don’t see an advantage because helm-bibtex gives you all you need to select your own publications with just a few key strokes. If helm-bibtex’ search does not work well in your case (perhaps another author has the same name as you), I would suggest using tags to mark your own publications: https://github.com/tmalsburg/helm-bibtex#tagging-publications Titus On 2015-12-05 Sat 05:31, John Kitchin wrote: > I cannot reproduce that, and it shouldn't have any effect. Maybe > something else is going on. > >> >> Thanks for the quick answer. this does seem to work but as a side effect >> seems to break the TAB key to select action >> the message window shows: >> >> helm-select-nth-action: Nothing is selected >> No Actions available [8 times] >> >> thx again >> >> Z >> >> On Sat, Dec 5, 2015 at 3:05 PM, John Kitchin <jkitchin@andrew.cmu.edu> >> wrote: >> >>> Try (untested) >>> >>> >>> >>> >>> >>> John >>> >>> ----------------------------------- >>> Professor John Kitchin >>> Doherty Hall A207F >>> Department of Chemical Engineering >>> Carnegie Mellon University >>> Pittsburgh, PA 15213 >>> 412-268-7803 >>> @johnkitchin >>> http://kitchingroup.cheme.cmu.edu >>> >>> >>> On Sat, Dec 5, 2015 at 7:17 AM, Xebar Saram <zeltakc@gmail.com> wrote: >>> >>>> Hi again Titus and list >>>> >>>> so the semester is finally nearing the end which means i finally have >>>> some time (and a life :)) to get back to what i partially started a few >>>> months ago. >>>> >>>> i have a question regarding Predefined searches. i have a search that >>>> works well for searching papers i authored. >>>> i am thinking of moving towards 2 bib files instead of 1 big one, that is >>>> one for my papers and one for the rest (any disadvantages of using 2 bib >>>> files?). >>>> i want to add in the Predefined search to only draw from my file (mypaper.bib), >>>> even though in the default helm-bibtex sources it will have 2 inputs. is >>>> such a thing possible? >>>> >>>> this is how a current search i have looks like >>>> >>>> #+BEGIN_SRC emacs-lisp :results none >>>> >>>> ;; Define helm-search with predefined search expression: >>>> (defun helm-bibtex-ikloog-publications () >>>> "Search BibTeX entries authored by me" >>>> (interactive) >>>> (helm :sources '(helm-source-bibtex) >>>> :full-frame t >>>> :input "kloog !unpublished !prep " >>>> :candidate-number-limit 500)) >>>> #+END_SRC >>>> >>>> how does one add the specific .bib file filter? >>>> >>>> best >>>> >>>> Z >>>> >>>> On Sun, May 31, 2015 at 7:23 PM, Titus von der Malsburg < >>>> malsburg@posteo.de> wrote: >>>> >>>>> >>>>> On 2015-05-31 Sun 03:01, Xebar Saram wrote: >>>>> > Thanks so much everyone for these great replies. i will investigate >>>>> this >>>>> > further today and let everyone know how im going with my transition :) >>>>> > >>>>> > thanks again >>>>> > >>>>> > PS: Titus, do you think that the helm-bibtex APA style reference list >>>>> > could be user customizable in the future? >>>>> >>>>> Depends on what you mean by customizable. If you mean a customization >>>>> option to allows you to replace the function for APA formatting with >>>>> another function, then yes that would definitely make sense. >>>>> >>>>> Titus >>>>> >>>>> > >>>>> > Z. >>>>> > >>>>> > On Sat, May 30, 2015 at 6:56 PM, John Kitchin <jkitchin@andrew.cmu.edu >>>>> > >>>>> > wrote: >>>>> > >>>>> >> >>>>> >> >>>>> >> On Saturday, May 30, 2015, Titus von der Malsburg <malsburg@posteo.de >>>>> > >>>>> >> wrote: >>>>> >> >>>>> >>> >>>>> >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote: >>>>> >>> > Hi all >>>>> >>> > >>>>> >>> > i have been using jabref for the past 2-4 years in my academia >>>>> work to >>>>> >>> > manage my reference library. i dont use latex (..its on my TODO >>>>> >>> list...when >>>>> >>> > (f ever) i have time..) so for now i just want something to manage >>>>> my >>>>> >>> > references. the key things i need to move over from jabref are: >>>>> >>> >>>>> >>> Author of helm-bibtex here. >>>>> >>> >>>>> >>> > 1. easy add references >>>>> >>> >>>>> >>> Helm-bibtex doesn’t deal with this because I prefer to edit my BibTeX >>>>> >>> file by hand. BibTeX retrieved from journals is almost always messy >>>>> and >>>>> >>> I need to edit it anyway. It’s not too hard, though: I click on >>>>> BibTeX >>>>> >>> export on the journal page, the BibTeX file is opened in Emacs, I fix >>>>> >>> it, and use a command that appends it to my bibliography. >>>>> >>> >>>>> >>> However, I think org-ref has tools that do more to support importing >>>>> new >>>>> >>> entries and org-ref combines well with helm-bibtex. >>>>> >> >>>>> >> >>>>> >> Org-ref has doi-utils that let you add bibtex entries and download >>>>> PDFs >>>>> >> from a doi or crossref query. >>>>> >> >>>>> >> >>>>> >>> >>>>> >>> > 2. a way to quick filter references (helm bibtex seems like a good >>>>> >>> solution) >>>>> >>> >>>>> >>> That’s what helm-bibtex was written to solve. >>>>> >>> >>>>> >>> > 3. filter lists based on tags/keywords (orgmode has that covered) >>>>> >>> >>>>> >>> In helm-bibtex you can also search for keywords and tags. >>>>> >>> >>>>> >>> > 4. this one is important: a way to quickly export selected >>>>> references in >>>>> >>> > word/odf/html based on a pre fixed style (ie Nature, Chicago etc) >>>>> >>> >>>>> >>> helm-bibtex can generate references in APA style but as far as I can >>>>> see >>>>> >>> Chicago style is very similar, so it shouldn’t be hard to add support >>>>> >>> for that. >>>>> >>> >>>>> >>> > anyone uses such a system in emacs/org and can recommend the way to >>>>> >>> > go? >>>>> >>> >>>>> >>> For more details, see: https://github.com/tmalsburg/helm-bibtex >>>>> >>> >>>>> >>> Titus >>>>> >>> >>>>> >>> >>>>> >> >>>>> >> -- >>>>> >> John >>>>> >> >>>>> >> ----------------------------------- >>>>> >> Professor John Kitchin >>>>> >> Doherty Hall A207F >>>>> >> Department of Chemical Engineering >>>>> >> Carnegie Mellon University >>>>> >> Pittsburgh, PA 15213 >>>>> >> 412-268-7803 >>>>> >> @johnkitchin >>>>> >> http://kitchingroup.cheme.cmu.edu >>>>> >> >>>>> >> >>>>> >> >>>>> >>>>> >>>> >>> [-- Attachment #2: signature.asc --] [-- Type: application/pgp-signature, Size: 472 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
* Re: jabref like orgmode based solution to bibliography management (not for latex) 2015-12-05 18:04 ` Titus von der Malsburg @ 2015-12-05 18:28 ` Xebar Saram 0 siblings, 0 replies; 14+ messages in thread From: Xebar Saram @ 2015-12-05 18:28 UTC (permalink / raw) To: Titus von der Malsburg; +Cc: org mode, John Kitchin [-- Attachment #1: Type: text/plain, Size: 7404 bytes --] Hi Guys I have no clue why i had the issue before but after an emacs restart Johns code snippet does work :D thanks again guys, really appreciate your help as always kind regards Z On Sat, Dec 5, 2015 at 8:04 PM, Titus von der Malsburg <malsburg@posteo.de> wrote: > > John’s code should do the trick. I don’t see how this could possibly > cause your problems with the action menu. The change should be > completely transparent for Helm. > > Regarding your other question: I don’t see any disadvantages of using > several BibTeX files but I also don’t see an advantage because > helm-bibtex gives you all you need to select your own publications with > just a few key strokes. If helm-bibtex’ search does not work well in > your case (perhaps another author has the same name as you), I would > suggest using tags to mark your own publications: > > https://github.com/tmalsburg/helm-bibtex#tagging-publications > > Titus > > > On 2015-12-05 Sat 05:31, John Kitchin wrote: > > I cannot reproduce that, and it shouldn't have any effect. Maybe > > something else is going on. > > > >> > >> Thanks for the quick answer. this does seem to work but as a side effect > >> seems to break the TAB key to select action > >> the message window shows: > >> > >> helm-select-nth-action: Nothing is selected > >> No Actions available [8 times] > >> > >> thx again > >> > >> Z > >> > >> On Sat, Dec 5, 2015 at 3:05 PM, John Kitchin <jkitchin@andrew.cmu.edu> > >> wrote: > >> > >>> Try (untested) > >>> > >>> > >>> > >>> > >>> > >>> John > >>> > >>> ----------------------------------- > >>> Professor John Kitchin > >>> Doherty Hall A207F > >>> Department of Chemical Engineering > >>> Carnegie Mellon University > >>> Pittsburgh, PA 15213 > >>> 412-268-7803 > >>> @johnkitchin > >>> http://kitchingroup.cheme.cmu.edu > >>> > >>> > >>> On Sat, Dec 5, 2015 at 7:17 AM, Xebar Saram <zeltakc@gmail.com> wrote: > >>> > >>>> Hi again Titus and list > >>>> > >>>> so the semester is finally nearing the end which means i finally have > >>>> some time (and a life :)) to get back to what i partially started a > few > >>>> months ago. > >>>> > >>>> i have a question regarding Predefined searches. i have a search that > >>>> works well for searching papers i authored. > >>>> i am thinking of moving towards 2 bib files instead of 1 big one, > that is > >>>> one for my papers and one for the rest (any disadvantages of using 2 > bib > >>>> files?). > >>>> i want to add in the Predefined search to only draw from my file > (mypaper.bib), > >>>> even though in the default helm-bibtex sources it will have 2 inputs. > is > >>>> such a thing possible? > >>>> > >>>> this is how a current search i have looks like > >>>> > >>>> #+BEGIN_SRC emacs-lisp :results none > >>>> > >>>> ;; Define helm-search with predefined search expression: > >>>> (defun helm-bibtex-ikloog-publications () > >>>> "Search BibTeX entries authored by me" > >>>> (interactive) > >>>> (helm :sources '(helm-source-bibtex) > >>>> :full-frame t > >>>> :input "kloog !unpublished !prep " > >>>> :candidate-number-limit 500)) > >>>> #+END_SRC > >>>> > >>>> how does one add the specific .bib file filter? > >>>> > >>>> best > >>>> > >>>> Z > >>>> > >>>> On Sun, May 31, 2015 at 7:23 PM, Titus von der Malsburg < > >>>> malsburg@posteo.de> wrote: > >>>> > >>>>> > >>>>> On 2015-05-31 Sun 03:01, Xebar Saram wrote: > >>>>> > Thanks so much everyone for these great replies. i will investigate > >>>>> this > >>>>> > further today and let everyone know how im going with my > transition :) > >>>>> > > >>>>> > thanks again > >>>>> > > >>>>> > PS: Titus, do you think that the helm-bibtex APA style reference > list > >>>>> > could be user customizable in the future? > >>>>> > >>>>> Depends on what you mean by customizable. If you mean a > customization > >>>>> option to allows you to replace the function for APA formatting with > >>>>> another function, then yes that would definitely make sense. > >>>>> > >>>>> Titus > >>>>> > >>>>> > > >>>>> > Z. > >>>>> > > >>>>> > On Sat, May 30, 2015 at 6:56 PM, John Kitchin < > jkitchin@andrew.cmu.edu > >>>>> > > >>>>> > wrote: > >>>>> > > >>>>> >> > >>>>> >> > >>>>> >> On Saturday, May 30, 2015, Titus von der Malsburg < > malsburg@posteo.de > >>>>> > > >>>>> >> wrote: > >>>>> >> > >>>>> >>> > >>>>> >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote: > >>>>> >>> > Hi all > >>>>> >>> > > >>>>> >>> > i have been using jabref for the past 2-4 years in my academia > >>>>> work to > >>>>> >>> > manage my reference library. i dont use latex (..its on my TODO > >>>>> >>> list...when > >>>>> >>> > (f ever) i have time..) so for now i just want something to > manage > >>>>> my > >>>>> >>> > references. the key things i need to move over from jabref are: > >>>>> >>> > >>>>> >>> Author of helm-bibtex here. > >>>>> >>> > >>>>> >>> > 1. easy add references > >>>>> >>> > >>>>> >>> Helm-bibtex doesn’t deal with this because I prefer to edit my > BibTeX > >>>>> >>> file by hand. BibTeX retrieved from journals is almost always > messy > >>>>> and > >>>>> >>> I need to edit it anyway. It’s not too hard, though: I click on > >>>>> BibTeX > >>>>> >>> export on the journal page, the BibTeX file is opened in Emacs, > I fix > >>>>> >>> it, and use a command that appends it to my bibliography. > >>>>> >>> > >>>>> >>> However, I think org-ref has tools that do more to support > importing > >>>>> new > >>>>> >>> entries and org-ref combines well with helm-bibtex. > >>>>> >> > >>>>> >> > >>>>> >> Org-ref has doi-utils that let you add bibtex entries and download > >>>>> PDFs > >>>>> >> from a doi or crossref query. > >>>>> >> > >>>>> >> > >>>>> >>> > >>>>> >>> > 2. a way to quick filter references (helm bibtex seems like a > good > >>>>> >>> solution) > >>>>> >>> > >>>>> >>> That’s what helm-bibtex was written to solve. > >>>>> >>> > >>>>> >>> > 3. filter lists based on tags/keywords (orgmode has that > covered) > >>>>> >>> > >>>>> >>> In helm-bibtex you can also search for keywords and tags. > >>>>> >>> > >>>>> >>> > 4. this one is important: a way to quickly export selected > >>>>> references in > >>>>> >>> > word/odf/html based on a pre fixed style (ie Nature, Chicago > etc) > >>>>> >>> > >>>>> >>> helm-bibtex can generate references in APA style but as far as I > can > >>>>> see > >>>>> >>> Chicago style is very similar, so it shouldn’t be hard to add > support > >>>>> >>> for that. > >>>>> >>> > >>>>> >>> > anyone uses such a system in emacs/org and can recommend the > way to > >>>>> >>> > go? > >>>>> >>> > >>>>> >>> For more details, see: https://github.com/tmalsburg/helm-bibtex > >>>>> >>> > >>>>> >>> Titus > >>>>> >>> > >>>>> >>> > >>>>> >> > >>>>> >> -- > >>>>> >> John > >>>>> >> > >>>>> >> ----------------------------------- > >>>>> >> Professor John Kitchin > >>>>> >> Doherty Hall A207F > >>>>> >> Department of Chemical Engineering > >>>>> >> Carnegie Mellon University > >>>>> >> Pittsburgh, PA 15213 > >>>>> >> 412-268-7803 > >>>>> >> @johnkitchin > >>>>> >> http://kitchingroup.cheme.cmu.edu > >>>>> >> > >>>>> >> > >>>>> >> > >>>>> > >>>>> > >>>> > >>> > > [-- Attachment #2: Type: text/html, Size: 12066 bytes --] ^ permalink raw reply [flat|nested] 14+ messages in thread
end of thread, other threads:[~2015-12-05 18:28 UTC | newest] Thread overview: 14+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2015-05-30 8:20 jabref like orgmode based solution to bibliography management (not for latex) Xebar Saram 2015-05-30 8:46 ` Vaidheeswaran C 2015-05-30 9:59 ` Otto Pichlhöfer 2015-05-30 15:36 ` Titus von der Malsburg 2015-05-30 15:56 ` John Kitchin 2015-05-31 10:01 ` Xebar Saram 2015-05-31 12:43 ` John Kitchin 2015-05-31 16:23 ` Titus von der Malsburg 2015-12-05 12:17 ` Xebar Saram 2015-12-05 13:05 ` John Kitchin 2015-12-05 13:17 ` Xebar Saram 2015-12-05 13:31 ` John Kitchin 2015-12-05 18:04 ` Titus von der Malsburg 2015-12-05 18:28 ` Xebar Saram
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