From: Charles Berry <ccberry@ucsd.edu>
To: emacs-orgmode@gnu.org
Subject: Re: R code block produces only partial output
Date: Tue, 5 Aug 2014 18:05:08 +0000 (UTC) [thread overview]
Message-ID: <loom.20140805T193613-649@post.gmane.org> (raw)
In-Reply-To: 877g2oz9gv.fsf@gmail.com
Eric Schulte <schulte.eric <at> gmail.com> writes:
>
> Andreas Kiermeier <andreas.kiermeier <at> gmail.com> writes:
>
> > On 4 August 2014 21:23, Eric Schulte <schulte.eric <at> gmail.com> wrote:
> >> Why are you setting the output type to "graphics" when you are trying to
>
> Hi Andreas,
>
> I can't reproduce your problem. I get the following from your minimal
> example when run in an Org-mode file, and from the command line. They
> are identical. Are you using the latest version of Org-mode?
>
> Best,
> Eric
>
[snip]
>
> [Previously saved workspace restored]
>
> > x <- rnorm(100)
> > y <- quantile(x, probs=seq(0,1,0.1))
> > names(y) <-
as.character(c("0",".1",".2",".3",".4",".5",".6",".7",".8",".9","1"))
> > y
> 0 .1 .2 .3 .4 .5
> -2.53624773 -1.30846042 -0.70659822 -0.43565010 -0.24318346 -0.01034625
> .6 .7 .8 .9 1
> 0.24125644 0.49945059 0.92032314 1.36423669 2.83357915
> >
>
>
>
Eric,
As noted by Andreas and John this is a problem for session output.
org-babel-R-evaluate-session uses
(string-match "^\\([ ]*[>+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\)" line)
to find the start of R output in the session.
This does not match the ` 0', but matches the ` .6'
in the output you show above, so if that had been in a session, all the
output up to and including the '.' before the '6' would be clipped
by the following
(substring line (match-end 1))
as Andreas output showed.
Deleting the "\\." fixes Andreas case, but what are the circumstances
requiring the "\\." ?
HTH,
Chuck
next prev parent reply other threads:[~2014-08-05 18:05 UTC|newest]
Thread overview: 41+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-08-04 11:18 R code block produces only partial output Andreas Kiermeier
2014-08-04 11:53 ` Eric Schulte
2014-08-04 12:23 ` Andreas Kiermeier
2014-08-04 13:10 ` Eric Schulte
2014-08-05 0:46 ` Andreas Kiermeier
2014-08-05 4:00 ` John Hendy
2014-08-05 4:31 ` Andreas Kiermeier
2014-08-05 18:05 ` Charles Berry [this message]
2014-08-05 19:02 ` Eric Schulte
2014-08-05 19:11 ` John Hendy
2014-08-05 19:57 ` Nick Dokos
2014-08-05 20:10 ` Nick Dokos
2014-08-05 22:21 ` Charles C. Berry
2014-08-06 3:32 ` Aaron Ecay
2014-08-06 11:30 ` Eric Schulte
2014-08-07 6:00 ` Aaron Ecay
2014-08-07 17:42 ` Charles C. Berry
2014-08-07 18:06 ` Aaron Ecay
2014-08-07 18:42 ` Charles C. Berry
2014-08-07 19:06 ` Thomas S. Dye
2014-08-09 8:54 ` Rainer M Krug
2014-08-16 5:05 ` Aaron Ecay
2014-08-16 18:50 ` Charles C. Berry
2014-08-16 20:58 ` Aaron Ecay
2014-08-17 6:03 ` Achim Gratz
2014-08-19 0:13 ` Aaron Ecay
2014-08-19 5:36 ` Achim Gratz
2014-08-23 8:32 ` Aaron Ecay
2014-08-23 9:24 ` Andreas Kiermeier
2014-08-23 17:10 ` Aaron Ecay
2014-08-23 18:35 ` Thomas S. Dye
2014-08-23 19:37 ` Ista Zahn
2014-08-24 0:10 ` Charles C. Berry
2014-08-28 5:24 ` Aaron Ecay
2014-09-01 5:00 ` Aaron Ecay
2014-09-01 16:08 ` Charles C. Berry
2014-08-09 8:48 ` Rainer M Krug
2014-08-06 1:11 ` Andreas Kiermeier
2014-08-06 2:21 ` Charles C. Berry
2014-08-06 3:24 ` Aaron Ecay
2014-08-06 15:59 ` Charles C. Berry
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