From: Eric Schulte <schulte.eric@gmail.com>
To: Charles Berry <ccberry@ucsd.edu>
Cc: emacs-orgmode@gnu.org
Subject: Re: R code block produces only partial output
Date: Tue, 05 Aug 2014 15:02:22 -0400 [thread overview]
Message-ID: <87lhr27oap.fsf@gmail.com> (raw)
In-Reply-To: <loom.20140805T193613-649@post.gmane.org> (Charles Berry's message of "Tue, 5 Aug 2014 18:05:08 +0000 (UTC)")
Charles Berry <ccberry@ucsd.edu> writes:
> Eric Schulte <schulte.eric <at> gmail.com> writes:
>
>>
>> Andreas Kiermeier <andreas.kiermeier <at> gmail.com> writes:
>>
>> > On 4 August 2014 21:23, Eric Schulte <schulte.eric <at> gmail.com> wrote:
>> >> Why are you setting the output type to "graphics" when you are trying to
>
>>
>> Hi Andreas,
>>
>> I can't reproduce your problem. I get the following from your minimal
>> example when run in an Org-mode file, and from the command line. They
>> are identical. Are you using the latest version of Org-mode?
>>
>> Best,
>> Eric
>>
> [snip]
>>
>> [Previously saved workspace restored]
>>
>> > x <- rnorm(100)
>> > y <- quantile(x, probs=seq(0,1,0.1))
>> > names(y) <-
> as.character(c("0",".1",".2",".3",".4",".5",".6",".7",".8",".9","1"))
>> > y
>> 0 .1 .2 .3 .4 .5
>> -2.53624773 -1.30846042 -0.70659822 -0.43565010 -0.24318346 -0.01034625
>> .6 .7 .8 .9 1
>> 0.24125644 0.49945059 0.92032314 1.36423669 2.83357915
>> >
>>
>>
>>
>
>
> Eric,
>
> As noted by Andreas and John this is a problem for session output.
>
> org-babel-R-evaluate-session uses
>
> (string-match "^\\([ ]*[>+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\)" line)
>
> to find the start of R output in the session.
>
> This does not match the ` 0', but matches the ` .6'
> in the output you show above, so if that had been in a session, all the
> output up to and including the '.' before the '6' would be clipped
> by the following
>
> (substring line (match-end 1))
>
>
> as Andreas output showed.
>
> Deleting the "\\." fixes Andreas case, but what are the circumstances
> requiring the "\\." ?
>
I don't know.
The Babel R support needs a dedicated maintainer. This was a role Dan
Davison originally filled. I've partially filled in since, but as a
*very* light R user I'm not the best person.
>
> HTH,
>
> Chuck
>
>
--
Eric Schulte
https://cs.unm.edu/~eschulte
PGP: 0x614CA05D (see https://u.fsf.org/yw)
next prev parent reply other threads:[~2014-08-05 19:02 UTC|newest]
Thread overview: 41+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-08-04 11:18 R code block produces only partial output Andreas Kiermeier
2014-08-04 11:53 ` Eric Schulte
2014-08-04 12:23 ` Andreas Kiermeier
2014-08-04 13:10 ` Eric Schulte
2014-08-05 0:46 ` Andreas Kiermeier
2014-08-05 4:00 ` John Hendy
2014-08-05 4:31 ` Andreas Kiermeier
2014-08-05 18:05 ` Charles Berry
2014-08-05 19:02 ` Eric Schulte [this message]
2014-08-05 19:11 ` John Hendy
2014-08-05 19:57 ` Nick Dokos
2014-08-05 20:10 ` Nick Dokos
2014-08-05 22:21 ` Charles C. Berry
2014-08-06 3:32 ` Aaron Ecay
2014-08-06 11:30 ` Eric Schulte
2014-08-07 6:00 ` Aaron Ecay
2014-08-07 17:42 ` Charles C. Berry
2014-08-07 18:06 ` Aaron Ecay
2014-08-07 18:42 ` Charles C. Berry
2014-08-07 19:06 ` Thomas S. Dye
2014-08-09 8:54 ` Rainer M Krug
2014-08-16 5:05 ` Aaron Ecay
2014-08-16 18:50 ` Charles C. Berry
2014-08-16 20:58 ` Aaron Ecay
2014-08-17 6:03 ` Achim Gratz
2014-08-19 0:13 ` Aaron Ecay
2014-08-19 5:36 ` Achim Gratz
2014-08-23 8:32 ` Aaron Ecay
2014-08-23 9:24 ` Andreas Kiermeier
2014-08-23 17:10 ` Aaron Ecay
2014-08-23 18:35 ` Thomas S. Dye
2014-08-23 19:37 ` Ista Zahn
2014-08-24 0:10 ` Charles C. Berry
2014-08-28 5:24 ` Aaron Ecay
2014-09-01 5:00 ` Aaron Ecay
2014-09-01 16:08 ` Charles C. Berry
2014-08-09 8:48 ` Rainer M Krug
2014-08-06 1:11 ` Andreas Kiermeier
2014-08-06 2:21 ` Charles C. Berry
2014-08-06 3:24 ` Aaron Ecay
2014-08-06 15:59 ` Charles C. Berry
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