From: Andreas Kiermeier <andreas.kiermeier@gmail.com>
To: John Hendy <jw.hendy@gmail.com>
Cc: emacs-orgmode <Emacs-orgmode@gnu.org>,
Eric Schulte <schulte.eric@gmail.com>
Subject: Re: R code block produces only partial output
Date: Tue, 5 Aug 2014 14:01:54 +0930 [thread overview]
Message-ID: <CAN7vk5T-zTEcvT+C5JVxrUAda9P80BdBpT-iQ1QLUJ1Zm+yGJg@mail.gmail.com> (raw)
In-Reply-To: <CA+M2ft-35PbLKgKMSrQH0qXAo2BNM74XkfGOc+ScX+cs9YFF-g@mail.gmail.com>
On 5 August 2014 13:30, John Hendy <jw.hendy@gmail.com> wrote:
> I can reproduce with a minimal config and on Linux (to toss in a
> confirmation). I *also* accidentally just stumbled on a way I can
> toggle the behavior between correct and incorrect! It arose because my
> file was not able to use the #+PROPERTY settings you have -- my
> results were not obeying what I had set. I looked around and believe
> the syntax is correct per this page:
> - http://orgmode.org/manual/Header-arguments-in-Org-mode-properties.html
Thanks for confirming this John!
I couldn't see how the #+PROPERTY settings I had differed from those
in the link ... I recall getting them from there (but maybe I mistyped
something?). So I copied what you provided for the rest of my testing.
Getting rid of :session all together did produce the correct results
for me, too. However, including a :session in either #+PROPERTY or at
the beginning of the code block did not - irrespective of whether I
used *R* or simply r.
> Correct results:
>
> #+begin_src org
>
> #+STARTUP: showall indent hidestars
> #+PROPERTY: header-args:R :session r
>
> #+BEGIN_SRC R :results output drawer
> require(rms)
> set.seed(123)
> x <- rnorm(100)
> describe(x)
> #+END_SRC
[snip]
So, this example did *not* work for me.
> The reason, I think, is this (also correct):
>
> #+begin_src org
>
> #+STARTUP: showall indent hidestars
>
>
> #+BEGIN_SRC R :results output drawer
> require(rms)
> set.seed(123)
> x <- rnorm(100)
> describe(x)
> #+END_SRC
Yes, without a session it seems to work fine.
Thanks,
Andreas
next prev parent reply other threads:[~2014-08-05 4:32 UTC|newest]
Thread overview: 41+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-08-04 11:18 R code block produces only partial output Andreas Kiermeier
2014-08-04 11:53 ` Eric Schulte
2014-08-04 12:23 ` Andreas Kiermeier
2014-08-04 13:10 ` Eric Schulte
2014-08-05 0:46 ` Andreas Kiermeier
2014-08-05 4:00 ` John Hendy
2014-08-05 4:31 ` Andreas Kiermeier [this message]
2014-08-05 18:05 ` Charles Berry
2014-08-05 19:02 ` Eric Schulte
2014-08-05 19:11 ` John Hendy
2014-08-05 19:57 ` Nick Dokos
2014-08-05 20:10 ` Nick Dokos
2014-08-05 22:21 ` Charles C. Berry
2014-08-06 3:32 ` Aaron Ecay
2014-08-06 11:30 ` Eric Schulte
2014-08-07 6:00 ` Aaron Ecay
2014-08-07 17:42 ` Charles C. Berry
2014-08-07 18:06 ` Aaron Ecay
2014-08-07 18:42 ` Charles C. Berry
2014-08-07 19:06 ` Thomas S. Dye
2014-08-09 8:54 ` Rainer M Krug
2014-08-16 5:05 ` Aaron Ecay
2014-08-16 18:50 ` Charles C. Berry
2014-08-16 20:58 ` Aaron Ecay
2014-08-17 6:03 ` Achim Gratz
2014-08-19 0:13 ` Aaron Ecay
2014-08-19 5:36 ` Achim Gratz
2014-08-23 8:32 ` Aaron Ecay
2014-08-23 9:24 ` Andreas Kiermeier
2014-08-23 17:10 ` Aaron Ecay
2014-08-23 18:35 ` Thomas S. Dye
2014-08-23 19:37 ` Ista Zahn
2014-08-24 0:10 ` Charles C. Berry
2014-08-28 5:24 ` Aaron Ecay
2014-09-01 5:00 ` Aaron Ecay
2014-09-01 16:08 ` Charles C. Berry
2014-08-09 8:48 ` Rainer M Krug
2014-08-06 1:11 ` Andreas Kiermeier
2014-08-06 2:21 ` Charles C. Berry
2014-08-06 3:24 ` Aaron Ecay
2014-08-06 15:59 ` Charles C. Berry
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