From: "Charles C. Berry" <ccberry@ucsd.edu>
To: Andreas Kiermeier <andreas.kiermeier@gmail.com>
Cc: emacs-orgmode@gnu.org
Subject: Re: R code block produces only partial output
Date: Tue, 5 Aug 2014 19:21:44 -0700 [thread overview]
Message-ID: <alpine.OSX.2.00.1408051840070.1184@charles-berrys-macbook.local> (raw)
In-Reply-To: <CAN7vk5S_MdyEnbJKhA0vzsqmhkVPUU38VYs6YBRyFm_Xpjte6A@mail.gmail.com>
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On Tue, 5 Aug 2014, Andreas Kiermeier wrote:
>
> On 6 August 2014 03:35, Charles Berry <ccberry@ucsd.edu> wrote:
> [snip]
>
>> org-babel-R-evaluate-session uses
>>
>> (string-match "^\\([ ]*[>+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\)" line)
>>
>> to find the start of R output in the session.
>>
[snip]
>
> Thanks Charles for finding this.
>
> I do use R quite a bit, and I can only think of ">
>
> " (at beginning of the line) as the command prompt, along with "+
>
> " (at beginning of the line) as a continuation prompt for multi-line
> commands. I don't know what
>
> "\" or
>
> "." provide
> (I don't think this has changed over the various R versions)
>
> .
>
> A
> complication might be that the user can change the command prompt (and
> continuation prompt) to something else they like (
> see here:
> http://cran.r-project.org/doc/manuals/r-release/R-intro.html#Customizing-the-environment
> ).
>
> For the time being I've taken the "\\." out of my local version of ob-R.el
> (then byte compiled and loaded) and it seems to work fine.
>
> Maybe this is a question for the ESS developers who use R extensively and
> probably might be able to provide some more definitive guidance on this
> than I can?
Here is the docstring from ESS's inferior-S-prompt:
inferior-S-prompt is a variable defined in `ess-custom.el'.
Its value is "[]a-zA-Z0-9.[]*\\([>+.] \\)*> "
Documentation:
Regexp used in S and R inferior and transcript buffers for prompt
navigation.
Customise it to make `comint-previous-prompt' quiqly navigate to
interesting portions of the buffer.
You can customize this variable.
----
Note that there is a space *required* after the [>+.], but the hard coded
regex in `org-babel-R-evaluate-session' lets the space be optional.
I am guessing the a-zA-Z stuff is there to strip 'Browse[1]> ' prompts and
such, which probably isn't an issue for babel.
Just before the defcustom for inferior-S-prompt, I see this comment
in ess-custom.el:
;; need to recognise + + + > > >
;; and "+ . + " in tracebug prompt
Ha! The '.' seems to be for ess-tracebug. I am guessing that nobody will
need to output tracebug sessions from babel. So maybe it is safe to delete
the "." after all - or at least require the space after it.
Maybe the regex should be put in a defcustom.
p.s. There is also `inferior-ess-prompt' which on my system is the same as
inferior-S-prompt (in an R buffer - its buffer local)
HTH,
Chuck
next prev parent reply other threads:[~2014-08-06 2:21 UTC|newest]
Thread overview: 41+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-08-04 11:18 R code block produces only partial output Andreas Kiermeier
2014-08-04 11:53 ` Eric Schulte
2014-08-04 12:23 ` Andreas Kiermeier
2014-08-04 13:10 ` Eric Schulte
2014-08-05 0:46 ` Andreas Kiermeier
2014-08-05 4:00 ` John Hendy
2014-08-05 4:31 ` Andreas Kiermeier
2014-08-05 18:05 ` Charles Berry
2014-08-05 19:02 ` Eric Schulte
2014-08-05 19:11 ` John Hendy
2014-08-05 19:57 ` Nick Dokos
2014-08-05 20:10 ` Nick Dokos
2014-08-05 22:21 ` Charles C. Berry
2014-08-06 3:32 ` Aaron Ecay
2014-08-06 11:30 ` Eric Schulte
2014-08-07 6:00 ` Aaron Ecay
2014-08-07 17:42 ` Charles C. Berry
2014-08-07 18:06 ` Aaron Ecay
2014-08-07 18:42 ` Charles C. Berry
2014-08-07 19:06 ` Thomas S. Dye
2014-08-09 8:54 ` Rainer M Krug
2014-08-16 5:05 ` Aaron Ecay
2014-08-16 18:50 ` Charles C. Berry
2014-08-16 20:58 ` Aaron Ecay
2014-08-17 6:03 ` Achim Gratz
2014-08-19 0:13 ` Aaron Ecay
2014-08-19 5:36 ` Achim Gratz
2014-08-23 8:32 ` Aaron Ecay
2014-08-23 9:24 ` Andreas Kiermeier
2014-08-23 17:10 ` Aaron Ecay
2014-08-23 18:35 ` Thomas S. Dye
2014-08-23 19:37 ` Ista Zahn
2014-08-24 0:10 ` Charles C. Berry
2014-08-28 5:24 ` Aaron Ecay
2014-09-01 5:00 ` Aaron Ecay
2014-09-01 16:08 ` Charles C. Berry
2014-08-09 8:48 ` Rainer M Krug
2014-08-06 1:11 ` Andreas Kiermeier
2014-08-06 2:21 ` Charles C. Berry [this message]
2014-08-06 3:24 ` Aaron Ecay
2014-08-06 15:59 ` Charles C. Berry
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