* Problem with babel and R + lattice
@ 2012-03-08 20:40 John Hendy
2012-03-08 20:52 ` John Hendy
0 siblings, 1 reply; 4+ messages in thread
From: John Hendy @ 2012-03-08 20:40 UTC (permalink / raw)
To: emacs-orgmode
I have an R block like so:
#+begin_src R
library(lattice)
library(tikzDevice)
=bunch of code=
barchart(side$name~side$x2,groups=side$type,horiz=T,
xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product
Performance (2-box)")
dev.off()
tools::texi2dvi("bar-2b.tex",pdf=T)
#+end_src
The resultant tex file is empty where the tikz code should be and
texi2dvi fails. Any suggestions? If I change my plot to base graphics
with barplot, it works. I'm thinking this is a lattice/babel issue?
Thanks for any input,
John
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: Problem with babel and R + lattice
2012-03-08 20:40 Problem with babel and R + lattice John Hendy
@ 2012-03-08 20:52 ` John Hendy
2012-03-09 8:41 ` Rainer M Krug
0 siblings, 1 reply; 4+ messages in thread
From: John Hendy @ 2012-03-08 20:52 UTC (permalink / raw)
To: emacs-orgmode
Drat. I meant to add that when I run the code exactly as I have it
from R directly, it works. I literally copy and paste my org-mode
babel block code line by line into a terminal and obtain the proper
output via tikz. *That's* the perplexing part. What would be working
directly from R and not from Org-mode?
For reference, I've generated plenty of stuff just like this via
org-mode/babel. Come to think of it, even another lattice plot.
Not sure how to pinpoint what's goofy about this specific plot.
John
On Thu, Mar 8, 2012 at 2:40 PM, John Hendy <jw.hendy@gmail.com> wrote:
> I have an R block like so:
>
> #+begin_src R
>
> library(lattice)
> library(tikzDevice)
>
> =bunch of code=
>
> barchart(side$name~side$x2,groups=side$type,horiz=T,
> xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product
> Performance (2-box)")
>
> dev.off()
> tools::texi2dvi("bar-2b.tex",pdf=T)
>
> #+end_src
>
> The resultant tex file is empty where the tikz code should be and
> texi2dvi fails. Any suggestions? If I change my plot to base graphics
> with barplot, it works. I'm thinking this is a lattice/babel issue?
>
>
> Thanks for any input,
> John
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: Problem with babel and R + lattice
2012-03-08 20:52 ` John Hendy
@ 2012-03-09 8:41 ` Rainer M Krug
2012-03-09 14:04 ` John Hendy
0 siblings, 1 reply; 4+ messages in thread
From: Rainer M Krug @ 2012-03-09 8:41 UTC (permalink / raw)
To: John Hendy; +Cc: emacs-orgmode
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
On 08/03/12 21:52, John Hendy wrote:
> Drat. I meant to add that when I run the code exactly as I have it from R directly, it works. I
> literally copy and paste my org-mode babel block code line by line into a terminal and obtain
> the proper output via tikz. *That's* the perplexing part. What would be working directly from R
> and not from Org-mode?
>
> For reference, I've generated plenty of stuff just like this via org-mode/babel. Come to think
> of it, even another lattice plot.
>
> Not sure how to pinpoint what's goofy about this specific plot.
>
> John
>
> On Thu, Mar 8, 2012 at 2:40 PM, John Hendy <jw.hendy@gmail.com> wrote:
>> I have an R block like so:
>>
>> #+begin_src R
>>
>> library(lattice) library(tikzDevice)
>>
>> =bunch of code=
>>
>> barchart(side$name~side$x2,groups=side$type,horiz=T,
>> xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product Performance (2-box)")
>>
>> dev.off() tools::texi2dvi("bar-2b.tex",pdf=T)
>>
>> #+end_src
>>
>> The resultant tex file is empty where the tikz code should be and texi2dvi fails. Any
>> suggestions? If I change my plot to base graphics with barplot, it works. I'm thinking this
>> is a lattice/babel issue?
As with ggplot, you have to print your plot (if I remember correctly), i.e:
print(barchart(...))
Cheers,
Rainer
>>
>>
>> Thanks for any input, John
>
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys.
(Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
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=aDVb
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^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: Problem with babel and R + lattice
2012-03-09 8:41 ` Rainer M Krug
@ 2012-03-09 14:04 ` John Hendy
0 siblings, 0 replies; 4+ messages in thread
From: John Hendy @ 2012-03-09 14:04 UTC (permalink / raw)
To: R.M.Krug; +Cc: emacs-orgmode
On Fri, Mar 9, 2012 at 2:41 AM, Rainer M Krug <r.m.krug@gmail.com> wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> On 08/03/12 21:52, John Hendy wrote:
>> Drat. I meant to add that when I run the code exactly as I have it from R directly, it works. I
>> literally copy and paste my org-mode babel block code line by line into a terminal and obtain
>> the proper output via tikz. *That's* the perplexing part. What would be working directly from R
>> and not from Org-mode?
>>
>> For reference, I've generated plenty of stuff just like this via org-mode/babel. Come to think
>> of it, even another lattice plot.
>>
>> Not sure how to pinpoint what's goofy about this specific plot.
>>
>> John
>>
>> On Thu, Mar 8, 2012 at 2:40 PM, John Hendy <jw.hendy@gmail.com> wrote:
>>> I have an R block like so:
>>>
>>> #+begin_src R
>>>
>>> library(lattice) library(tikzDevice)
>>>
>>> =bunch of code=
>>>
>>> barchart(side$name~side$x2,groups=side$type,horiz=T,
>>> xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product Performance (2-box)")
>>>
>>> dev.off() tools::texi2dvi("bar-2b.tex",pdf=T)
>>>
>>> #+end_src
>>>
>>> The resultant tex file is empty where the tikz code should be and texi2dvi fails. Any
>>> suggestions? If I change my plot to base graphics with barplot, it works. I'm thinking this
>>> is a lattice/babel issue?
>
> As with ggplot, you have to print your plot (if I remember correctly), i.e:
>
> print(barchart(...))
I stumbled on this, too but hadn't posted back to the list yet. What
got me on the track to the solution was copying my babel block code
into an R source file and trying to do = > source("path/to/file")=
directly from R. That wasn't working either, so I knew it was
something I was doing and not org. I found the R faq which said that
source files don't generate output for everything unless you tell them
to print() :)
Thanks!
John
>
> Cheers,
>
> Rainer
>
>>>
>>>
>>> Thanks for any input, John
>>
>
>
> - --
> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys.
> (Germany)
>
> Centre of Excellence for Invasion Biology
> Stellenbosch University
> South Africa
>
> Tel : +33 - (0)9 53 10 27 44
> Cell: +33 - (0)6 85 62 59 98
> Fax : +33 - (0)9 58 10 27 44
>
> Fax (D): +49 - (0)3 21 21 25 22 44
>
> email: Rainer@krugs.de
>
> Skype: RMkrug
> -----BEGIN PGP SIGNATURE-----
> Version: GnuPG v1.4.11 (GNU/Linux)
> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>
> iEYEARECAAYFAk9ZwlcACgkQoYgNqgF2egqMewCfar+JxC9uV9p1O2IYVVYcqyeM
> 7/4AnRLp8gYqSDe/74D9helafqNR5Vgt
> =aDVb
> -----END PGP SIGNATURE-----
^ permalink raw reply [flat|nested] 4+ messages in thread
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2012-03-08 20:40 Problem with babel and R + lattice John Hendy
2012-03-08 20:52 ` John Hendy
2012-03-09 8:41 ` Rainer M Krug
2012-03-09 14:04 ` John Hendy
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