* Problem with babel and R + lattice
@ 2012-03-08 20:40 John Hendy
2012-03-08 20:52 ` John Hendy
0 siblings, 1 reply; 4+ messages in thread
From: John Hendy @ 2012-03-08 20:40 UTC (permalink / raw)
To: emacs-orgmode
I have an R block like so:
#+begin_src R
library(lattice)
library(tikzDevice)
=bunch of code=
barchart(side$name~side$x2,groups=side$type,horiz=T,
xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product
Performance (2-box)")
dev.off()
tools::texi2dvi("bar-2b.tex",pdf=T)
#+end_src
The resultant tex file is empty where the tikz code should be and
texi2dvi fails. Any suggestions? If I change my plot to base graphics
with barplot, it works. I'm thinking this is a lattice/babel issue?
Thanks for any input,
John
^ permalink raw reply [flat|nested] 4+ messages in thread* Re: Problem with babel and R + lattice 2012-03-08 20:40 Problem with babel and R + lattice John Hendy @ 2012-03-08 20:52 ` John Hendy 2012-03-09 8:41 ` Rainer M Krug 0 siblings, 1 reply; 4+ messages in thread From: John Hendy @ 2012-03-08 20:52 UTC (permalink / raw) To: emacs-orgmode Drat. I meant to add that when I run the code exactly as I have it from R directly, it works. I literally copy and paste my org-mode babel block code line by line into a terminal and obtain the proper output via tikz. *That's* the perplexing part. What would be working directly from R and not from Org-mode? For reference, I've generated plenty of stuff just like this via org-mode/babel. Come to think of it, even another lattice plot. Not sure how to pinpoint what's goofy about this specific plot. John On Thu, Mar 8, 2012 at 2:40 PM, John Hendy <jw.hendy@gmail.com> wrote: > I have an R block like so: > > #+begin_src R > > library(lattice) > library(tikzDevice) > > =bunch of code= > > barchart(side$name~side$x2,groups=side$type,horiz=T, > xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product > Performance (2-box)") > > dev.off() > tools::texi2dvi("bar-2b.tex",pdf=T) > > #+end_src > > The resultant tex file is empty where the tikz code should be and > texi2dvi fails. Any suggestions? If I change my plot to base graphics > with barplot, it works. I'm thinking this is a lattice/babel issue? > > > Thanks for any input, > John ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: Problem with babel and R + lattice 2012-03-08 20:52 ` John Hendy @ 2012-03-09 8:41 ` Rainer M Krug 2012-03-09 14:04 ` John Hendy 0 siblings, 1 reply; 4+ messages in thread From: Rainer M Krug @ 2012-03-09 8:41 UTC (permalink / raw) To: John Hendy; +Cc: emacs-orgmode -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 08/03/12 21:52, John Hendy wrote: > Drat. I meant to add that when I run the code exactly as I have it from R directly, it works. I > literally copy and paste my org-mode babel block code line by line into a terminal and obtain > the proper output via tikz. *That's* the perplexing part. What would be working directly from R > and not from Org-mode? > > For reference, I've generated plenty of stuff just like this via org-mode/babel. Come to think > of it, even another lattice plot. > > Not sure how to pinpoint what's goofy about this specific plot. > > John > > On Thu, Mar 8, 2012 at 2:40 PM, John Hendy <jw.hendy@gmail.com> wrote: >> I have an R block like so: >> >> #+begin_src R >> >> library(lattice) library(tikzDevice) >> >> =bunch of code= >> >> barchart(side$name~side$x2,groups=side$type,horiz=T, >> xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product Performance (2-box)") >> >> dev.off() tools::texi2dvi("bar-2b.tex",pdf=T) >> >> #+end_src >> >> The resultant tex file is empty where the tikz code should be and texi2dvi fails. Any >> suggestions? If I change my plot to base graphics with barplot, it works. I'm thinking this >> is a lattice/babel issue? As with ggplot, you have to print your plot (if I remember correctly), i.e: print(barchart(...)) Cheers, Rainer >> >> >> Thanks for any input, John > - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D): +49 - (0)3 21 21 25 22 44 email: Rainer@krugs.de Skype: RMkrug -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAk9ZwlcACgkQoYgNqgF2egqMewCfar+JxC9uV9p1O2IYVVYcqyeM 7/4AnRLp8gYqSDe/74D9helafqNR5Vgt =aDVb -----END PGP SIGNATURE----- ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: Problem with babel and R + lattice 2012-03-09 8:41 ` Rainer M Krug @ 2012-03-09 14:04 ` John Hendy 0 siblings, 0 replies; 4+ messages in thread From: John Hendy @ 2012-03-09 14:04 UTC (permalink / raw) To: R.M.Krug; +Cc: emacs-orgmode On Fri, Mar 9, 2012 at 2:41 AM, Rainer M Krug <r.m.krug@gmail.com> wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > On 08/03/12 21:52, John Hendy wrote: >> Drat. I meant to add that when I run the code exactly as I have it from R directly, it works. I >> literally copy and paste my org-mode babel block code line by line into a terminal and obtain >> the proper output via tikz. *That's* the perplexing part. What would be working directly from R >> and not from Org-mode? >> >> For reference, I've generated plenty of stuff just like this via org-mode/babel. Come to think >> of it, even another lattice plot. >> >> Not sure how to pinpoint what's goofy about this specific plot. >> >> John >> >> On Thu, Mar 8, 2012 at 2:40 PM, John Hendy <jw.hendy@gmail.com> wrote: >>> I have an R block like so: >>> >>> #+begin_src R >>> >>> library(lattice) library(tikzDevice) >>> >>> =bunch of code= >>> >>> barchart(side$name~side$x2,groups=side$type,horiz=T, >>> xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product Performance (2-box)") >>> >>> dev.off() tools::texi2dvi("bar-2b.tex",pdf=T) >>> >>> #+end_src >>> >>> The resultant tex file is empty where the tikz code should be and texi2dvi fails. Any >>> suggestions? If I change my plot to base graphics with barplot, it works. I'm thinking this >>> is a lattice/babel issue? > > As with ggplot, you have to print your plot (if I remember correctly), i.e: > > print(barchart(...)) I stumbled on this, too but hadn't posted back to the list yet. What got me on the track to the solution was copying my babel block code into an R source file and trying to do = > source("path/to/file")= directly from R. That wasn't working either, so I knew it was something I was doing and not org. I found the R faq which said that source files don't generate output for everything unless you tell them to print() :) Thanks! John > > Cheers, > > Rainer > >>> >>> >>> Thanks for any input, John >> > > > - -- > Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. > (Germany) > > Centre of Excellence for Invasion Biology > Stellenbosch University > South Africa > > Tel : +33 - (0)9 53 10 27 44 > Cell: +33 - (0)6 85 62 59 98 > Fax : +33 - (0)9 58 10 27 44 > > Fax (D): +49 - (0)3 21 21 25 22 44 > > email: Rainer@krugs.de > > Skype: RMkrug > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.11 (GNU/Linux) > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ > > iEYEARECAAYFAk9ZwlcACgkQoYgNqgF2egqMewCfar+JxC9uV9p1O2IYVVYcqyeM > 7/4AnRLp8gYqSDe/74D9helafqNR5Vgt > =aDVb > -----END PGP SIGNATURE----- ^ permalink raw reply [flat|nested] 4+ messages in thread
end of thread, other threads:[~2012-03-09 14:04 UTC | newest] Thread overview: 4+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2012-03-08 20:40 Problem with babel and R + lattice John Hendy 2012-03-08 20:52 ` John Hendy 2012-03-09 8:41 ` Rainer M Krug 2012-03-09 14:04 ` John Hendy
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