* avoiding source block prompts
@ 2010-07-26 18:28 Charles C. Berry
2010-07-27 18:18 ` Eric Schulte
0 siblings, 1 reply; 7+ messages in thread
From: Charles C. Berry @ 2010-07-26 18:28 UTC (permalink / raw)
To: emacs-orgmode
I think this is a new feature or perhaps a bug, which I noticed when
upgrading to version 7.01.
The newline and the two prompts '> >' in the results block below did not
show up in the earlier versions I used.
If this is a 'feature', is there a clean way to change this behavior?
If this is a bug, is there a simple patch to fix it?
#+begin_src R :session :results output
### create x
x <- rnorm(1)
### now print the result
x
#+end_src
#+results:
:
: > > [1] 2.186783
What I would have liked is to have something that looks like this:
#+results:
: [1] 2.186783
Thanks,
Chuck
Charles C. Berry (858) 534-2098
Dept of Family/Preventive Medicine
E mailto:cberry@tajo.ucsd.edu UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
^ permalink raw reply [flat|nested] 7+ messages in thread* Re: avoiding source block prompts 2010-07-26 18:28 avoiding source block prompts Charles C. Berry @ 2010-07-27 18:18 ` Eric Schulte 2010-07-27 19:40 ` Charles C. Berry 0 siblings, 1 reply; 7+ messages in thread From: Eric Schulte @ 2010-07-27 18:18 UTC (permalink / raw) To: Charles C. Berry; +Cc: emacs-orgmode Hi Charles, I just pushed up a fix for the extra prompts in your output. You will still have a blank line (the output from "x <- rnorm(1)"), however you can suppress that line by placing the "x <- rnorm(1)" command in a previous code block in the same session. Best -- Eric "Charles C. Berry" <cberry@tajo.ucsd.edu> writes: > I think this is a new feature or perhaps a bug, which I noticed when > upgrading to version 7.01. > > The newline and the two prompts '> >' in the results block below did > not show up in the earlier versions I used. > > If this is a 'feature', is there a clean way to change this behavior? > > If this is a bug, is there a simple patch to fix it? > > #+begin_src R :session :results output > ### create x > x <- rnorm(1) > ### now print the result > x > #+end_src > > #+results: > : > : > > [1] 2.186783 > > > What I would have liked is to have something that looks like this: > > #+results: > : [1] 2.186783 > > Thanks, > > Chuck > > > Charles C. Berry (858) 534-2098 > Dept of Family/Preventive Medicine > E mailto:cberry@tajo.ucsd.edu UC San Diego > http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 > > > > _______________________________________________ > Emacs-orgmode mailing list > Please use `Reply All' to send replies to the list. > Emacs-orgmode@gnu.org > http://lists.gnu.org/mailman/listinfo/emacs-orgmode ^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: avoiding source block prompts 2010-07-27 18:18 ` Eric Schulte @ 2010-07-27 19:40 ` Charles C. Berry 2010-07-27 20:15 ` Prompts again WAS " Charles C. Berry 0 siblings, 1 reply; 7+ messages in thread From: Charles C. Berry @ 2010-07-27 19:40 UTC (permalink / raw) To: Eric Schulte; +Cc: emacs-orgmode On Tue, 27 Jul 2010, Eric Schulte wrote: > Hi Charles, > > I just pushed up a fix for the extra prompts in your output. You will > still have a blank line (the output from "x <- rnorm(1)"), however you > can suppress that line by placing the "x <- rnorm(1)" command in a > previous code block in the same session. Eric, Thanks. That works for me. Chuck > > Best -- Eric > > "Charles C. Berry" <cberry@tajo.ucsd.edu> writes: > >> I think this is a new feature or perhaps a bug, which I noticed when >> upgrading to version 7.01. >> >> The newline and the two prompts '> >' in the results block below did >> not show up in the earlier versions I used. >> >> If this is a 'feature', is there a clean way to change this behavior? >> >> If this is a bug, is there a simple patch to fix it? >> >> #+begin_src R :session :results output >> ### create x >> x <- rnorm(1) >> ### now print the result >> x >> #+end_src >> >> #+results: >> : >> : > > [1] 2.186783 >> >> >> What I would have liked is to have something that looks like this: >> >> #+results: >> : [1] 2.186783 >> >> Thanks, >> >> Chuck >> >> >> Charles C. Berry (858) 534-2098 >> Dept of Family/Preventive Medicine >> E mailto:cberry@tajo.ucsd.edu UC San Diego >> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 >> >> >> >> _______________________________________________ >> Emacs-orgmode mailing list >> Please use `Reply All' to send replies to the list. >> Emacs-orgmode@gnu.org >> http://lists.gnu.org/mailman/listinfo/emacs-orgmode > Charles C. Berry (858) 534-2098 Dept of Family/Preventive Medicine E mailto:cberry@tajo.ucsd.edu UC San Diego http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 ^ permalink raw reply [flat|nested] 7+ messages in thread
* Prompts again WAS Re: avoiding source block prompts 2010-07-27 19:40 ` Charles C. Berry @ 2010-07-27 20:15 ` Charles C. Berry 2010-07-27 22:31 ` Charles C. Berry 0 siblings, 1 reply; 7+ messages in thread From: Charles C. Berry @ 2010-07-27 20:15 UTC (permalink / raw) To: Eric Schulte; +Cc: emacs-orgmode Eric, I spoke too soon. Have a look at the following. You'll see that the prompts show up there. :-( Chuck #+begin_src R :session :results output ### create x x <- data.frame(a=rnorm(2),b=rnorm(2)) ### now print the result x #+end_src #+results: : : > > a b : 1 0.2702748 -0.2938296 : 2 1.1095136 0.1769425 On Tue, 27 Jul 2010, Charles C. Berry wrote: > On Tue, 27 Jul 2010, Eric Schulte wrote: > >> Hi Charles, >> >> I just pushed up a fix for the extra prompts in your output. You will >> still have a blank line (the output from "x <- rnorm(1)"), however you >> can suppress that line by placing the "x <- rnorm(1)" command in a >> previous code block in the same session. > > Eric, > > Thanks. That works for me. > > Chuck > >> >> Best -- Eric >> >> "Charles C. Berry" <cberry@tajo.ucsd.edu> writes: >> >> > I think this is a new feature or perhaps a bug, which I noticed when >> > upgrading to version 7.01. >> > >> > The newline and the two prompts '> >' in the results block below did >> > not show up in the earlier versions I used. >> > >> > If this is a 'feature', is there a clean way to change this behavior? >> > >> > If this is a bug, is there a simple patch to fix it? >> > >> > #+begin_src R :session :results output >> > ### create x >> > x <- rnorm(1) >> > ### now print the result >> > x >> > #+end_src >> > >> > #+results: >> > : >> > : > > [1] 2.186783 >> > >> > >> > What I would have liked is to have something that looks like this: >> > >> > #+results: >> > : [1] 2.186783 >> > >> > Thanks, >> > >> > Chuck >> > >> > >> > Charles C. Berry (858) 534-2098 >> > Dept of Family/Preventive >> > Medicine >> > E mailto:cberry@tajo.ucsd.edu UC San Diego >> > http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego >> > 92093-0901 >> > >> > >> > >> > _______________________________________________ >> > Emacs-orgmode mailing list >> > Please use `Reply All' to send replies to the list. >> > Emacs-orgmode@gnu.org >> > http://lists.gnu.org/mailman/listinfo/emacs-orgmode >> > > Charles C. Berry (858) 534-2098 > Dept of Family/Preventive > Medicine > E mailto:cberry@tajo.ucsd.edu UC San Diego > http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 > > > > _______________________________________________ > Emacs-orgmode mailing list > Please use `Reply All' to send replies to the list. > Emacs-orgmode@gnu.org > http://lists.gnu.org/mailman/listinfo/emacs-orgmode > > Charles C. Berry (858) 534-2098 Dept of Family/Preventive Medicine E mailto:cberry@tajo.ucsd.edu UC San Diego http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 ^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Prompts again WAS Re: avoiding source block prompts 2010-07-27 20:15 ` Prompts again WAS " Charles C. Berry @ 2010-07-27 22:31 ` Charles C. Berry 2010-07-28 14:03 ` Eric Schulte 0 siblings, 1 reply; 7+ messages in thread From: Charles C. Berry @ 2010-07-27 22:31 UTC (permalink / raw) To: Eric Schulte; +Cc: emacs-orgmode Eric, In ob-R.el, changing this (if (string-match "^\\([ >]+\\)\\[[0-9]+\\]" line) to this (if (string-match "^\\([ ]*[>+][ ]?\\)+\\([[0-9]+\\|[ ]\\)" line) seems to fix things (note I added plus sign which is the continuation prompt in R). I tried it on a bunch of varied source blocks and it seems to work OK, but I worry that there may be case where it will fail. Chuck On Tue, 27 Jul 2010, Charles C. Berry wrote: > > Eric, > > I spoke too soon. > > Have a look at the following. You'll see that the prompts show up there. :-( > > Chuck > > #+begin_src R :session :results output > ### create x > x <- data.frame(a=rnorm(2),b=rnorm(2)) > ### now print the result > x > #+end_src > > #+results: > : > : > > a b > : 1 0.2702748 -0.2938296 > : 2 1.1095136 0.1769425 > > > > On Tue, 27 Jul 2010, Charles C. Berry wrote: > >> On Tue, 27 Jul 2010, Eric Schulte wrote: >> >> > Hi Charles, >> > >> > I just pushed up a fix for the extra prompts in your output. You will >> > still have a blank line (the output from "x <- rnorm(1)"), however you >> > can suppress that line by placing the "x <- rnorm(1)" command in a >> > previous code block in the same session. >> >> Eric, >> >> Thanks. That works for me. >> >> Chuck >> >> > >> > Best -- Eric >> > >> > "Charles C. Berry" <cberry@tajo.ucsd.edu> writes: >> > >> > > I think this is a new feature or perhaps a bug, which I noticed when >> > > upgrading to version 7.01. >> > > >> > > The newline and the two prompts '> >' in the results block below did >> > > not show up in the earlier versions I used. >> > > >> > > If this is a 'feature', is there a clean way to change this behavior? >> > > >> > > If this is a bug, is there a simple patch to fix it? >> > > >> > > #+begin_src R :session :results output >> > > ### create x >> > > x <- rnorm(1) >> > > ### now print the result >> > > x >> > > #+end_src >> > > >> > > #+results: >> > > : >> > > : > > [1] 2.186783 >> > > >> > > >> > > What I would have liked is to have something that looks like this: >> > > >> > > #+results: >> > > : [1] 2.186783 >> > > >> > > Thanks, >> > > >> > > Chuck >> > > >> > > >> > > Charles C. Berry (858) 534-2098 >> > > Dept of Family/Preventive >> > > Medicine >> > > E mailto:cberry@tajo.ucsd.edu UC San Diego >> > > http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego >> > > 92093-0901 >> > > >> > > >> > > >> > > _______________________________________________ >> > > Emacs-orgmode mailing list >> > > Please use `Reply All' to send replies to the list. >> > > Emacs-orgmode@gnu.org >> > > http://lists.gnu.org/mailman/listinfo/emacs-orgmode >> > >> >> Charles C. Berry (858) 534-2098 >> Dept of Family/Preventive >> Medicine >> E mailto:cberry@tajo.ucsd.edu UC San Diego >> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 >> >> >> >> _______________________________________________ >> Emacs-orgmode mailing list >> Please use `Reply All' to send replies to the list. >> Emacs-orgmode@gnu.org >> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >> >> > > Charles C. Berry (858) 534-2098 > Dept of Family/Preventive > Medicine > E mailto:cberry@tajo.ucsd.edu UC San Diego > http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 > > > > _______________________________________________ > Emacs-orgmode mailing list > Please use `Reply All' to send replies to the list. > Emacs-orgmode@gnu.org > http://lists.gnu.org/mailman/listinfo/emacs-orgmode > Charles C. Berry (858) 534-2098 Dept of Family/Preventive Medicine E mailto:cberry@tajo.ucsd.edu UC San Diego http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 ^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Prompts again WAS Re: avoiding source block prompts 2010-07-27 22:31 ` Charles C. Berry @ 2010-07-28 14:03 ` Eric Schulte 2010-08-05 3:09 ` Charles C. Berry 0 siblings, 1 reply; 7+ messages in thread From: Eric Schulte @ 2010-07-28 14:03 UTC (permalink / raw) To: Charles C. Berry; +Cc: emacs-orgmode Thanks Chuck, I've just swapped in your new and improved regexp. I share your concern both that there could be cases where prompts aren't matched, or more seriously where the actual output looks like a prompt (e.g. user returns a prompt-like string). Before taking this explicit prompt removal approach I tried automatically removing comment lines from the input before passing it to the inferior R process, however that ran into similar problems of users potentially inputting valid strings which look like comments -- which would be hard to catch without implementing a fairly sophisticated R parser as part of Babel. This new regexp looks like the best option for now. Thanks! -- Eric "Charles C. Berry" <cberry@tajo.ucsd.edu> writes: > Eric, > > In ob-R.el, changing this > > (if (string-match "^\\([ >]+\\)\\[[0-9]+\\]" line) > > to this > > (if (string-match "^\\([ ]*[>+][ ]?\\)+\\([[0-9]+\\|[ ]\\)" line) > > seems to fix things (note I added plus sign which is the continuation > prompt in R). > > I tried it on a bunch of varied source blocks and it seems to work OK, > but I worry that there may be case where it will fail. > > Chuck > > > On Tue, 27 Jul 2010, Charles C. Berry wrote: > >> >> Eric, >> >> I spoke too soon. >> >> Have a look at the following. You'll see that the prompts show up there. :-( >> >> Chuck >> >> #+begin_src R :session :results output >> ### create x >> x <- data.frame(a=rnorm(2),b=rnorm(2)) >> ### now print the result >> x >> #+end_src >> >> #+results: >> : >> : > > a b >> : 1 0.2702748 -0.2938296 >> : 2 1.1095136 0.1769425 >> >> >> >> On Tue, 27 Jul 2010, Charles C. Berry wrote: >> >>> On Tue, 27 Jul 2010, Eric Schulte wrote: >>> >>> > Hi Charles, >>> > > I just pushed up a fix for the extra prompts in your output. >>> You will >>> > still have a blank line (the output from "x <- rnorm(1)"), however you >>> > can suppress that line by placing the "x <- rnorm(1)" command in a >>> > previous code block in the same session. >>> >>> Eric, >>> >>> Thanks. That works for me. >>> >>> Chuck >>> >>> > > Best -- Eric >>> > > "Charles C. Berry" <cberry@tajo.ucsd.edu> writes: >>> > > > I think this is a new feature or perhaps a bug, which I >>> noticed when >>> > > upgrading to version 7.01. >>> > > > > The newline and the two prompts '> >' in the results >>> block below did >>> > > not show up in the earlier versions I used. >>> > > > > If this is a 'feature', is there a clean way to change >>> this behavior? >>> > > > > If this is a bug, is there a simple patch to fix it? >>> > > > > #+begin_src R :session :results output >>> > > ### create x >>> > > x <- rnorm(1) >>> > > ### now print the result >>> > > x >>> > > #+end_src >>> > > > > #+results: >>> > > : >>> > > : > > [1] 2.186783 >>> > > > > > > What I would have liked is to have something that >>> looks like this: >>> > > > > #+results: >>> > > : [1] 2.186783 >>> > > > > Thanks, >>> > > > > Chuck >>> > > > > > > Charles C. Berry (858) >>> 534-2098 >>> > > Dept of >>> Family/Preventive > > Medicine >>> > > E mailto:cberry@tajo.ucsd.edu UC San Diego >>> > > http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San >>> Diego > > 92093-0901 >>> > > > > > > > > _______________________________________________ >>> > > Emacs-orgmode mailing list >>> > > Please use `Reply All' to send replies to the list. >>> > > Emacs-orgmode@gnu.org >>> > > http://lists.gnu.org/mailman/listinfo/emacs-orgmode >>> > >>> >>> Charles C. Berry (858) 534-2098 >>> Dept of Family/Preventive >>> Medicine >>> E mailto:cberry@tajo.ucsd.edu UC San Diego >>> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 >>> >>> >>> >>> _______________________________________________ >>> Emacs-orgmode mailing list >>> Please use `Reply All' to send replies to the list. >>> Emacs-orgmode@gnu.org >>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >>> >>> >> >> Charles C. Berry (858) 534-2098 >> Dept of Family/Preventive >> Medicine >> E mailto:cberry@tajo.ucsd.edu UC San Diego >> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 >> >> >> >> _______________________________________________ >> Emacs-orgmode mailing list >> Please use `Reply All' to send replies to the list. >> Emacs-orgmode@gnu.org >> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >> > > Charles C. Berry (858) 534-2098 > Dept of Family/Preventive Medicine > E mailto:cberry@tajo.ucsd.edu UC San Diego > http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 ^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Prompts again WAS Re: avoiding source block prompts 2010-07-28 14:03 ` Eric Schulte @ 2010-08-05 3:09 ` Charles C. Berry 0 siblings, 0 replies; 7+ messages in thread From: Charles C. Berry @ 2010-08-05 3:09 UTC (permalink / raw) To: Eric Schulte; +Cc: emacs-orgmode On Wed, 28 Jul 2010, Eric Schulte wrote: > Thanks Chuck, > > I've just swapped in your new and improved regexp. > > I share your concern both that there could be cases where prompts aren't > matched, or more seriously where the actual output looks like a prompt > (e.g. user returns a prompt-like string). > > Before taking this explicit prompt removal approach I tried > automatically removing comment lines from the input before passing it to > the inferior R process, however that ran into similar problems of users > potentially inputting valid strings which look like comments -- which > would be hard to catch without implementing a fairly sophisticated R > parser as part of Babel. > > This new regexp looks like the best option for now. > > Thanks! -- Eric Eric (and anyone else listening in), I've put together a revised org-babel-R-evaluate. With "R :session :results ouput" it will gracefully handle commands like: cat("\n > > + > \n") leaving the output in place, but trimming out the prompts and gratuitous lines. The code appears below along with a couple of test cases. I did not touch anything in org-babel-R-evaluate above the second '(output'; it looks like the ':session :results value' case will have trouble when a block ends with something like this cat( "no newline" );invisible(1+1) (say) and (inferior-ess-send-input) does not result in a newline, but I am not sure how to engineer that. Maybe just eval( parse( text=..ob.body ) ), but I don't know how to get the text in body sent to R as ..ob.body. If the elisp looks peculiar, it is because I am just picking it up. Criticism and pointers welcome. Chuck #+begin_src emacs-lisp (setq org-babel-R-initiate-sink "..ob.tcon <- textConnection(\"..ob.tcon.txt\",\"w\") ..ob.eol <- \"\n\" sink( ..ob.tcon ) \n") (setq org-babel-R-finish-sink "\nsink() close( ..ob.tcon ) cat( ..ob.eol ) cat(..ob.tcon.txt, sep=..ob.eol) rm( ..ob.tcon.txt )") (defmacro sinkout (bd) (list 'concat org-babel-R-initiate-sink bd org-babel-R-finish-sink)) (defun drop-two-lines (linestring) "Search for second '\\n' and delete all characters up to an including it." (substring linestring (progn (string-match "\n.*\n" linestring) (match-end 0)))) (defun org-babel-R-evaluate (session body result-type column-names-p row-names-p) "Pass BODY to the R process in SESSION. If RESULT-TYPE equals 'output then return a list of the outputs of the statements in BODY, if RESULT-TYPE equals 'value then return the value of the last statement in BODY, as elisp." (if (not session) ;; external process evaluation (case result-type (output (org-babel-eval org-babel-R-command body)) (value (let ((tmp-file (make-temp-file "org-babel-R-results-"))) (org-babel-eval org-babel-R-command (format org-babel-R-wrapper-method body tmp-file (if row-names-p "TRUE" "FALSE") (if column-names-p (if row-names-p "NA" "TRUE") "FALSE"))) (org-babel-R-process-value-result (org-babel-import-elisp-from-file (org-babel-maybe-remote-file tmp-file)) column-names-p)))) ;; comint session evaluation (case result-type (value (let ((tmp-file (make-temp-file "org-babel-R")) broke) (org-babel-comint-with-output (session org-babel-R-eoe-output) (insert (mapconcat #'org-babel-chomp (list body (format org-babel-R-wrapper-lastvar tmp-file (if row-names-p "TRUE" "FALSE") (if column-names-p (if row-names-p "NA" "TRUE") "FALSE")) org-babel-R-eoe-indicator) "\n")) (inferior-ess-send-input)) (org-babel-R-process-value-result (org-babel-import-elisp-from-file (org-babel-maybe-remote-file tmp-file)) column-names-p))) (output (drop-two-lines (mapconcat #'org-babel-chomp (butlast (delq nil (mapcar #'identity (org-babel-comint-with-output (session org-babel-R-eoe-output) (insert (mapconcat #'org-babel-chomp (list (sinkout body) org-babel-R-eoe-indicator) "\n")) (inferior-ess-send-input)))) 2) "\n")))))) #+end_src #+results: : org-babel-R-evaluate #+begin_src R :session :results output cat(" >\n") 1+1 #+end_src #+results: : > : [1] 2 #+begin_src R :session :results output cat(" > start of block < \n" ) x <- rnorm(3) x y <- as.data.frame(diag(2)) y+x cat(" >end of block< ") # no newline #+end_src #+results: : > start of block < : [1] -1.4569661 0.1888919 -0.3685594 : V1 V2 : 1 -0.4569661 -0.3685594 : 2 0.1888919 -0.4569661 : >end of block< Add an extra newline for :session :results value ? #+begin_src R :sesison :results value ## use C-g to return after C-c C-c ## a user might do this by mistake: cat("no newline") invisible(1+1) #+end_src #+results: : 2 > > "Charles C. Berry" <cberry@tajo.ucsd.edu> writes: > >> Eric, >> >> In ob-R.el, changing this >> >> (if (string-match "^\\([ >]+\\)\\[[0-9]+\\]" line) >> >> to this >> >> (if (string-match "^\\([ ]*[>+][ ]?\\)+\\([[0-9]+\\|[ ]\\)" line) >> >> seems to fix things (note I added plus sign which is the continuation >> prompt in R). >> >> I tried it on a bunch of varied source blocks and it seems to work OK, >> but I worry that there may be case where it will fail. >> >> Chuck >> >> >> On Tue, 27 Jul 2010, Charles C. Berry wrote: >> >>> >>> Eric, >>> >>> I spoke too soon. >>> >>> Have a look at the following. You'll see that the prompts show up there. :-( >>> >>> Chuck >>> >>> #+begin_src R :session :results output >>> ### create x >>> x <- data.frame(a=rnorm(2),b=rnorm(2)) >>> ### now print the result >>> x >>> #+end_src >>> >>> #+results: >>> : >>> : > > a b >>> : 1 0.2702748 -0.2938296 >>> : 2 1.1095136 0.1769425 >>> >>> >>> >>> On Tue, 27 Jul 2010, Charles C. Berry wrote: >>> >>>> On Tue, 27 Jul 2010, Eric Schulte wrote: >>>> >>>>> Hi Charles, >>>>>> I just pushed up a fix for the extra prompts in your output. >>>> You will >>>>> still have a blank line (the output from "x <- rnorm(1)"), however you >>>>> can suppress that line by placing the "x <- rnorm(1)" command in a >>>>> previous code block in the same session. >>>> >>>> Eric, >>>> >>>> Thanks. That works for me. >>>> >>>> Chuck >>>> >>>>>> Best -- Eric >>>>>> "Charles C. Berry" <cberry@tajo.ucsd.edu> writes: >>>>>>> I think this is a new feature or perhaps a bug, which I >>>> noticed when >>>>>> upgrading to version 7.01. >>>>>>>> The newline and the two prompts '> >' in the results >>>> block below did >>>>>> not show up in the earlier versions I used. >>>>>>>> If this is a 'feature', is there a clean way to change >>>> this behavior? >>>>>>>> If this is a bug, is there a simple patch to fix it? >>>>>>>> #+begin_src R :session :results output >>>>>> ### create x >>>>>> x <- rnorm(1) >>>>>> ### now print the result >>>>>> x >>>>>> #+end_src >>>>>>>> #+results: >>>>>> : >>>>>> : > > [1] 2.186783 >>>>>>>>>> What I would have liked is to have something that >>>> looks like this: >>>>>>>> #+results: >>>>>> : [1] 2.186783 >>>>>>>> Thanks, >>>>>>>> Chuck >>>>>>>>>> Charles C. Berry (858) >>>> 534-2098 >>>>>> Dept of >>>> Family/Preventive > > Medicine >>>>>> E mailto:cberry@tajo.ucsd.edu UC San Diego >>>>>> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San >>>> Diego > > 92093-0901 >>>>>>>>>>>> _______________________________________________ >>>>>> Emacs-orgmode mailing list >>>>>> Please use `Reply All' to send replies to the list. >>>>>> Emacs-orgmode@gnu.org >>>>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >>>>> >>>> >>>> Charles C. Berry (858) 534-2098 >>>> Dept of Family/Preventive >>>> Medicine >>>> E mailto:cberry@tajo.ucsd.edu UC San Diego >>>> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 >>>> >>>> >>>> >>>> _______________________________________________ >>>> Emacs-orgmode mailing list >>>> Please use `Reply All' to send replies to the list. >>>> Emacs-orgmode@gnu.org >>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >>>> >>>> >>> >>> Charles C. Berry (858) 534-2098 >>> Dept of Family/Preventive >>> Medicine >>> E mailto:cberry@tajo.ucsd.edu UC San Diego >>> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 >>> >>> >>> >>> _______________________________________________ >>> Emacs-orgmode mailing list >>> Please use `Reply All' to send replies to the list. >>> Emacs-orgmode@gnu.org >>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >>> >> >> Charles C. Berry (858) 534-2098 >> Dept of Family/Preventive Medicine >> E mailto:cberry@tajo.ucsd.edu UC San Diego >> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 > Charles C. Berry (858) 534-2098 Dept of Family/Preventive Medicine E mailto:cberry@tajo.ucsd.edu UC San Diego http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901 ^ permalink raw reply [flat|nested] 7+ messages in thread
end of thread, other threads:[~2010-08-05 3:11 UTC | newest] Thread overview: 7+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2010-07-26 18:28 avoiding source block prompts Charles C. Berry 2010-07-27 18:18 ` Eric Schulte 2010-07-27 19:40 ` Charles C. Berry 2010-07-27 20:15 ` Prompts again WAS " Charles C. Berry 2010-07-27 22:31 ` Charles C. Berry 2010-07-28 14:03 ` Eric Schulte 2010-08-05 3:09 ` Charles C. Berry
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