* using variables defined by org mode table in R leads to invalid function error on remote host
@ 2012-07-08 10:17 Johannes Meisig
2012-07-08 13:37 ` Eric Schulte
0 siblings, 1 reply; 3+ messages in thread
From: Johannes Meisig @ 2012-07-08 10:17 UTC (permalink / raw)
To: emacs-orgmode
Hi,
adding to this question:
http://lists.gnu.org/archive/html/emacs-orgmode/2012-06/msg00677.html
I have the following problem. If I define a table in an .org file and
then try to use it in R as a variable, it's no problem on the local
host. However, remotely I get the error:
Invalid function: with-parsed-tramp-file-name
The following code lines are sort of a minmal example for the behavior:
(leave the first line away for local execution)
#+PROPERTY: dir /foo@bar://home/user
#+TBLNAME: genes
| names |
|--------------------|
| ENSMUSG00000000031 |
| ENSMUSG00000063856 |
| ENSMUSG00000006056 |
#+BEGIN_SRC R :session :var genes=genes
print(genes[,1])
#+END_SRC
Any ideas? Thanks a lot,
Johannes
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: using variables defined by org mode table in R leads to invalid function error on remote host
2012-07-08 10:17 using variables defined by org mode table in R leads to invalid function error on remote host Johannes Meisig
@ 2012-07-08 13:37 ` Eric Schulte
2012-07-08 19:29 ` Johannes Meisig
0 siblings, 1 reply; 3+ messages in thread
From: Eric Schulte @ 2012-07-08 13:37 UTC (permalink / raw)
To: Johannes Meisig; +Cc: emacs-orgmode
Johannes Meisig <j.meisig@biologie.hu-berlin.de> writes:
> Hi,
>
> adding to this question:
>
> http://lists.gnu.org/archive/html/emacs-orgmode/2012-06/msg00677.html
>
> I have the following problem. If I define a table in an .org file and
> then try to use it in R as a variable, it's no problem on the local
> host. However, remotely I get the error:
>
> Invalid function: with-parsed-tramp-file-name
>
On my system that function is provided by tramp.el, so maybe adding
(require 'tramp)
to your .emacs will solve this problem.
Best,
>
> The following code lines are sort of a minmal example for the
>behavior:
> (leave the first line away for local execution)
>
> #+PROPERTY: dir /foo@bar://home/user
>
> #+TBLNAME: genes
> | names |
> |--------------------|
> | ENSMUSG00000000031 |
> | ENSMUSG00000063856 |
> | ENSMUSG00000006056 |
>
>
> #+BEGIN_SRC R :session :var genes=genes
> print(genes[,1])
> #+END_SRC
>
> Any ideas? Thanks a lot,
>
> Johannes
>
--
Eric Schulte
http://cs.unm.edu/~eschulte
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: using variables defined by org mode table in R leads to invalid function error on remote host
2012-07-08 13:37 ` Eric Schulte
@ 2012-07-08 19:29 ` Johannes Meisig
0 siblings, 0 replies; 3+ messages in thread
From: Johannes Meisig @ 2012-07-08 19:29 UTC (permalink / raw)
To: emacs-orgmode
Hi Eric,
No, (require 'tramp) doesn't solve the problem. However,
commenting out
(declare-function with-parsed-tramp-file-name "tramp" (filename var
&rest body))
in ob.el does the job. However, this can hardly be the solution (Also,
it doesn't get rid of the error message in the minibuffer).
Johannes
On 07/08/2012 03:37 PM, Eric Schulte wrote:
> Johannes Meisig <j.meisig@biologie.hu-berlin.de> writes:
>
>> Hi,
>>
>> adding to this question:
>>
>> http://lists.gnu.org/archive/html/emacs-orgmode/2012-06/msg00677.html
>>
>> I have the following problem. If I define a table in an .org file and
>> then try to use it in R as a variable, it's no problem on the local
>> host. However, remotely I get the error:
>>
>> Invalid function: with-parsed-tramp-file-name
>>
> On my system that function is provided by tramp.el, so maybe adding
>
> (require 'tramp)
>
> to your .emacs will solve this problem.
>
> Best,
>
>> The following code lines are sort of a minmal example for the
>> behavior:
>> (leave the first line away for local execution)
>>
>> #+PROPERTY: dir /foo@bar://home/user
>>
>> #+TBLNAME: genes
>> | names |
>> |--------------------|
>> | ENSMUSG00000000031 |
>> | ENSMUSG00000063856 |
>> | ENSMUSG00000006056 |
>>
>>
>> #+BEGIN_SRC R :session :var genes=genes
>> print(genes[,1])
>> #+END_SRC
>>
>> Any ideas? Thanks a lot,
>>
>> Johannes
>>
^ permalink raw reply [flat|nested] 3+ messages in thread
end of thread, other threads:[~2012-07-08 19:29 UTC | newest]
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2012-07-08 10:17 using variables defined by org mode table in R leads to invalid function error on remote host Johannes Meisig
2012-07-08 13:37 ` Eric Schulte
2012-07-08 19:29 ` Johannes Meisig
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