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* [ob-R] table variable passing broken
@ 2014-10-14 13:38 Andreas Leha
  2014-10-14 16:36 ` Charles Berry
  0 siblings, 1 reply; 4+ messages in thread
From: Andreas Leha @ 2014-10-14 13:38 UTC (permalink / raw)
  To: emacs-orgmode

Hi all,

There seems to be a bug in table passing as variables now using the
tangle-friendly version of passing variables.


Here is an example (I get an error also with emacs -Q):

--8<---------------cut here---------------start------------->8---
* test
#+name: testtab
| variable              | display                       | unit  |
|-----------------------+-------------------------------+-------|
| num_cells             | Number of Cells in Well       |       |
| cell_area             | Cell Area                     | μm²   |
| nucleus_area          | Nucleus Area                  | μm²   |
| roundness             | Cell Roundness                |       |
| ratio_w2l             | Cell Width to Length Ratio    |       |
| inten_nuc_dapi_median | Intensity Nucleus DAPI Median |       |
| dapi_median           | Intensity Nucleus DAPI Median |       |
| edu_median            | Intensity edu Median          |       |
| oct4_median           | Intensity oct4 Median         |       |
| clump_size            | Clump Size                    | cells |
| short_name            | Cell Line                     |       |
| p_col                 | Column                        |       |
| batch                 | Batch                         |       |
| concentration         | Fibronectin Concentration     | ugml  |
| Residual              | Residual                      |       |
| evaluation_guid       | Plate                         |       |
| donor                 | Genotype                      |       |

#+BEGIN_SRC R :session *test* :var test=testtab
  test
#+END_SRC

#+RESULTS:
--8<---------------cut here---------------end--------------->8---



I see this in my R session:

--8<---------------cut here---------------start------------->8---
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings,  (from testorg.org!917613Wp#22) : 
  line 17 did not have 3 elements
--8<---------------cut here---------------end--------------->8---

This is on
- GNU Emacs 24.4.50.1 (x86_64-apple-darwin13.3.0, NS appkit-1265.21 Version 10.9.4 (Build 13E28)) of 2014-09-02 on mib106584i.local
- Org-mode version 8.3beta (release_8.3beta-470-g087f8e)
- ess-version: 14.05 [git: 4283f1304a54502c42707b6a4ba347703f0992dd]

Best,
Andreas

^ permalink raw reply	[flat|nested] 4+ messages in thread

end of thread, other threads:[~2014-10-16 14:02 UTC | newest]

Thread overview: 4+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2014-10-14 13:38 [ob-R] table variable passing broken Andreas Leha
2014-10-14 16:36 ` Charles Berry
2014-10-14 19:03   ` Andreas Leha
2014-10-16 14:02     ` Andreas Leha

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