From: Andreas Leha <andreas.leha@med.uni-goettingen.de>
To: emacs-orgmode@gnu.org
Subject: [ob-R] table variable passing broken
Date: Tue, 14 Oct 2014 14:38:46 +0100 [thread overview]
Message-ID: <olud29ug49l.fsf@med.uni-goettingen.de> (raw)
Hi all,
There seems to be a bug in table passing as variables now using the
tangle-friendly version of passing variables.
Here is an example (I get an error also with emacs -Q):
--8<---------------cut here---------------start------------->8---
* test
#+name: testtab
| variable | display | unit |
|-----------------------+-------------------------------+-------|
| num_cells | Number of Cells in Well | |
| cell_area | Cell Area | μm² |
| nucleus_area | Nucleus Area | μm² |
| roundness | Cell Roundness | |
| ratio_w2l | Cell Width to Length Ratio | |
| inten_nuc_dapi_median | Intensity Nucleus DAPI Median | |
| dapi_median | Intensity Nucleus DAPI Median | |
| edu_median | Intensity edu Median | |
| oct4_median | Intensity oct4 Median | |
| clump_size | Clump Size | cells |
| short_name | Cell Line | |
| p_col | Column | |
| batch | Batch | |
| concentration | Fibronectin Concentration | ugml |
| Residual | Residual | |
| evaluation_guid | Plate | |
| donor | Genotype | |
#+BEGIN_SRC R :session *test* :var test=testtab
test
#+END_SRC
#+RESULTS:
--8<---------------cut here---------------end--------------->8---
I see this in my R session:
--8<---------------cut here---------------start------------->8---
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, (from testorg.org!917613Wp#22) :
line 17 did not have 3 elements
--8<---------------cut here---------------end--------------->8---
This is on
- GNU Emacs 24.4.50.1 (x86_64-apple-darwin13.3.0, NS appkit-1265.21 Version 10.9.4 (Build 13E28)) of 2014-09-02 on mib106584i.local
- Org-mode version 8.3beta (release_8.3beta-470-g087f8e)
- ess-version: 14.05 [git: 4283f1304a54502c42707b6a4ba347703f0992dd]
Best,
Andreas
next reply other threads:[~2014-10-14 13:39 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-10-14 13:38 Andreas Leha [this message]
2014-10-14 16:36 ` [ob-R] table variable passing broken Charles Berry
2014-10-14 19:03 ` Andreas Leha
2014-10-16 14:02 ` Andreas Leha
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