From mboxrd@z Thu Jan 1 00:00:00 1970 From: Andreas Leha Subject: [ob-R] table variable passing broken Date: Tue, 14 Oct 2014 14:38:46 +0100 Message-ID: Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:43021) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Xe2Jd-0001GD-QO for emacs-orgmode@gnu.org; Tue, 14 Oct 2014 09:39:13 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1Xe2JW-0004dc-A9 for emacs-orgmode@gnu.org; Tue, 14 Oct 2014 09:39:05 -0400 Received: from plane.gmane.org ([80.91.229.3]:45351) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Xe2JW-0004dW-48 for emacs-orgmode@gnu.org; Tue, 14 Oct 2014 09:38:58 -0400 Received: from list by plane.gmane.org with local (Exim 4.69) (envelope-from ) id 1Xe2JS-0001w3-Tb for emacs-orgmode@gnu.org; Tue, 14 Oct 2014 15:38:54 +0200 Received: from 193.63.222.28 ([193.63.222.28]) by main.gmane.org with esmtp (Gmexim 0.1 (Debian)) id 1AlnuQ-0007hv-00 for ; Tue, 14 Oct 2014 15:38:54 +0200 Received: from andreas.leha by 193.63.222.28 with local (Gmexim 0.1 (Debian)) id 1AlnuQ-0007hv-00 for ; Tue, 14 Oct 2014 15:38:54 +0200 List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: emacs-orgmode@gnu.org Hi all, There seems to be a bug in table passing as variables now using the tangle-friendly version of passing variables. Here is an example (I get an error also with emacs -Q): --8<---------------cut here---------------start------------->8--- * test #+name: testtab | variable | display | unit | |-----------------------+-------------------------------+-------| | num_cells | Number of Cells in Well | | | cell_area | Cell Area | μm² | | nucleus_area | Nucleus Area | μm² | | roundness | Cell Roundness | | | ratio_w2l | Cell Width to Length Ratio | | | inten_nuc_dapi_median | Intensity Nucleus DAPI Median | | | dapi_median | Intensity Nucleus DAPI Median | | | edu_median | Intensity edu Median | | | oct4_median | Intensity oct4 Median | | | clump_size | Clump Size | cells | | short_name | Cell Line | | | p_col | Column | | | batch | Batch | | | concentration | Fibronectin Concentration | ugml | | Residual | Residual | | | evaluation_guid | Plate | | | donor | Genotype | | #+BEGIN_SRC R :session *test* :var test=testtab test #+END_SRC #+RESULTS: --8<---------------cut here---------------end--------------->8--- I see this in my R session: --8<---------------cut here---------------start------------->8--- Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, (from testorg.org!917613Wp#22) : line 17 did not have 3 elements --8<---------------cut here---------------end--------------->8--- This is on - GNU Emacs 24.4.50.1 (x86_64-apple-darwin13.3.0, NS appkit-1265.21 Version 10.9.4 (Build 13E28)) of 2014-09-02 on mib106584i.local - Org-mode version 8.3beta (release_8.3beta-470-g087f8e) - ess-version: 14.05 [git: 4283f1304a54502c42707b6a4ba347703f0992dd] Best, Andreas