Trouble using julia with org-babel

Trouble using julia with org-babel

[Doyley, Marvin M.]

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Hi there,

I have been play  with julia the last couple of weeks and have been having some issues when I try to use it in org-babel

More specifically, It get the following error

ERROR: unsupported or misplaced expression using
 in _start at ./client.jl:394
 in _start at /julia/usr/lib/julia/sys.dylib


When I execute the following code block

#+begin_src julia
using Winston
#+end_src

#+RESULTS:

I should mention, that everything works perfectly in eshell or when I execute simple code blocks like


#+begin_src julia
linspace(0,10,5)
#+end_src

#+RESULTS:
|   0 |
| 2.5 |
|   5 |
| 7.5 |
|  10 |


Does Any body know how to resolve this issue.

Cheers,
M

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Re: Trouble using julia with org-babel

[Ista Zahn]

On Wed, Oct 29, 2014 at 12:35 PM, Doyley, Marvin M.
<mdoyley@ur.rochester.edu> wrote:
>
> Hi there,
>
> I have been play  with julia the last couple of weeks and have been having
> some issues when I try to use it in org-babel
>
> More specifically, It get the following error
>
> ERROR: unsupported or misplaced expression using
>  in _start at ./client.jl:394
>  in _start at /julia/usr/lib/julia/sys.dylib
>
>
> When I execute the following code block
>
> #+begin_src julia
> using Winston
> #+end_src

I get the same thing, though both of these variations work for me:

#+begin_src julia
using Winston
1 + 1
#+end_src

#+RESULTS:
: 2

#+begin_src julia :results output
  using Winston
#+end_src

Hope this helps,
Ista
>
> #+RESULTS:
>
> I should mention, that everything works perfectly in eshell or when I
> execute simple code blocks like
>
>
> #+begin_src julia
> linspace(0,10,5)
> #+end_src
>
> #+RESULTS:
> |   0 |
> | 2.5 |
> |   5 |
> | 7.5 |
> |  10 |
>
>
> Does Any body know how to resolve this issue.
>
> Cheers,
> M

Re: Trouble using julia with org-babel

[Doyley, Marvin M.]

I am using release-0.3.0 what version are you using. I am also using ob-julia.el
Cheers,
M

Sent from my iPad

> On Oct 29, 2014, at 9:43 PM, Ista Zahn <istazahn@gmail.com> wrote:
> 
> On Wed, Oct 29, 2014 at 12:35 PM, Doyley, Marvin M.
> <mdoyley@ur.rochester.edu> wrote:
>> 
>> Hi there,
>> 
>> I have been play  with julia the last couple of weeks and have been having
>> some issues when I try to use it in org-babel
>> 
>> More specifically, It get the following error
>> 
>> ERROR: unsupported or misplaced expression using
>> in _start at ./client.jl:394
>> in _start at /julia/usr/lib/julia/sys.dylib
>> 
>> 
>> When I execute the following code block
>> 
>> #+begin_src julia
>> using Winston
>> #+end_src
> 
> I get the same thing, though both of these variations work for me:
> 
> #+begin_src julia
> using Winston
> 1 + 1
> #+end_src
> 
> #+RESULTS:
> : 2
> 
> #+begin_src julia :results output
>  using Winston
> #+end_src
> 
> Hope this helps,
> Ista
>> 
>> #+RESULTS:
>> 
>> I should mention, that everything works perfectly in eshell or when I
>> execute simple code blocks like
>> 
>> 
>> #+begin_src julia
>> linspace(0,10,5)
>> #+end_src
>> 
>> #+RESULTS:
>> |   0 |
>> | 2.5 |
>> |   5 |
>> | 7.5 |
>> |  10 |
>> 
>> 
>> Does Any body know how to resolve this issue.
>> 
>> Cheers,
>> M

Re: Trouble using julia with org-babel

[Ista Zahn]

On Wed, Oct 29, 2014 at 10:09 PM, Doyley, Marvin M.
<mdoyley@ur.rochester.edu> wrote:
> I am using release-0.3.0 what version are you using. I am also using ob-julia.el

I'm using julia version 0.3.1 with GNU Emacs 24.4.1 and Org-mode
version 8.2.10. I'm using the ob-julia.el distributed with
org-plus-contrib.

Best,
Ista

> Cheers,
> M
>
> Sent from my iPad
>
>> On Oct 29, 2014, at 9:43 PM, Ista Zahn <istazahn@gmail.com> wrote:
>>
>> On Wed, Oct 29, 2014 at 12:35 PM, Doyley, Marvin M.
>> <mdoyley@ur.rochester.edu> wrote:
>>>
>>> Hi there,
>>>
>>> I have been play  with julia the last couple of weeks and have been having
>>> some issues when I try to use it in org-babel
>>>
>>> More specifically, It get the following error
>>>
>>> ERROR: unsupported or misplaced expression using
>>> in _start at ./client.jl:394
>>> in _start at /julia/usr/lib/julia/sys.dylib
>>>
>>>
>>> When I execute the following code block
>>>
>>> #+begin_src julia
>>> using Winston
>>> #+end_src
>>
>> I get the same thing, though both of these variations work for me:
>>
>> #+begin_src julia
>> using Winston
>> 1 + 1
>> #+end_src
>>
>> #+RESULTS:
>> : 2
>>
>> #+begin_src julia :results output
>>  using Winston
>> #+end_src
>>
>> Hope this helps,
>> Ista
>>>
>>> #+RESULTS:
>>>
>>> I should mention, that everything works perfectly in eshell or when I
>>> execute simple code blocks like
>>>
>>>
>>> #+begin_src julia
>>> linspace(0,10,5)
>>> #+end_src
>>>
>>> #+RESULTS:
>>> |   0 |
>>> | 2.5 |
>>> |   5 |
>>> | 7.5 |
>>> |  10 |
>>>
>>>
>>> Does Any body know how to resolve this issue.
>>>
>>> Cheers,
>>> M

Re: Trouble using julia with org-babel

[Doyley, Marvin M.]

Hi Ista,

It is now working for Winston, but I am having problems with PyPlot is the case for you ?

thanks
M

PS this is the error that I get when trying to load PyPlot

ERROR: could not load module python: dlopen(python.dylib, 9): image not found
 in pyinitialize at /Users/doyley/.julia/v0.3/PyCall/src/PyCall.jl:456
 in pyimport at /Users/doyley/.julia/v0.3/PyCall/src/PyCall.jl:105
 in include at ./boot.jl:245
 in include_from_node1 at ./loading.jl:128
 in reload_path at loading.jl:152
 in _require at loading.jl:67
 in require at loading.jl:51
 in _start at ./client.jl:394
 in _start at /julia/usr/lib/julia/sys.dylib
while loading /Users/doyley/.julia/v0.3/PyPlot/src/PyPlot.jl, in expression starting on line 32





On Oct 29, 2014, at 10:53 PM, Ista Zahn <istazahn@gmail.com> wrote:

> On Wed, Oct 29, 2014 at 10:09 PM, Doyley, Marvin M.
> <mdoyley@ur.rochester.edu> wrote:
>> I am using release-0.3.0 what version are you using. I am also using ob-julia.el
> 
> I'm using julia version 0.3.1 with GNU Emacs 24.4.1 and Org-mode
> version 8.2.10. I'm using the ob-julia.el distributed with
> org-plus-contrib.
> 
> Best,
> Ista
> 
>> Cheers,
>> M
>> 
>> Sent from my iPad
>> 
>>> On Oct 29, 2014, at 9:43 PM, Ista Zahn <istazahn@gmail.com> wrote:
>>> 
>>> On Wed, Oct 29, 2014 at 12:35 PM, Doyley, Marvin M.
>>> <mdoyley@ur.rochester.edu> wrote:
>>>> 
>>>> Hi there,
>>>> 
>>>> I have been play  with julia the last couple of weeks and have been having
>>>> some issues when I try to use it in org-babel
>>>> 
>>>> More specifically, It get the following error
>>>> 
>>>> ERROR: unsupported or misplaced expression using
>>>> in _start at ./client.jl:394
>>>> in _start at /julia/usr/lib/julia/sys.dylib
>>>> 
>>>> 
>>>> When I execute the following code block
>>>> 
>>>> #+begin_src julia
>>>> using Winston
>>>> #+end_src
>>> 
>>> I get the same thing, though both of these variations work for me:
>>> 
>>> #+begin_src julia
>>> using Winston
>>> 1 + 1
>>> #+end_src
>>> 
>>> #+RESULTS:
>>> : 2
>>> 
>>> #+begin_src julia :results output
>>> using Winston
>>> #+end_src
>>> 
>>> Hope this helps,
>>> Ista
>>>> 
>>>> #+RESULTS:
>>>> 
>>>> I should mention, that everything works perfectly in eshell or when I
>>>> execute simple code blocks like
>>>> 
>>>> 
>>>> #+begin_src julia
>>>> linspace(0,10,5)
>>>> #+end_src
>>>> 
>>>> #+RESULTS:
>>>> |   0 |
>>>> | 2.5 |
>>>> |   5 |
>>>> | 7.5 |
>>>> |  10 |
>>>> 
>>>> 
>>>> Does Any body know how to resolve this issue.
>>>> 
>>>> Cheers,
>>>> M