* org-ref 3 setup
@ 2022-07-20 9:00 Joseph Vidal-Rosset
[not found] ` <CAJ51ETrH-EbRmdQht3MVUqNZS2aJ3krvez2fPcgnLQM_LN+O5A@mail.gmail.com>
0 siblings, 1 reply; 4+ messages in thread
From: Joseph Vidal-Rosset @ 2022-07-20 9:00 UTC (permalink / raw)
To: John Kitchin; +Cc: org-mode-email
Hello John, (cc. list emacs-orgmode)
I have a problem with my emacs setup that is in relation with org-ref 3.
My emacs version is 29.0.50, via Prelude emacs, and my emacs is
launched with "emacs --daemon" .
Here is the error:
> Loading /home/joseph/.emacs.d/personal/myorgexport.el (source)...
> Output file:
> Warning (initialization): An error occurred while loading ‘/home/joseph/.emacs.d/init.elc’:
>
> Wrong type argument: stringp, nil
>
> To ensure normal operation, you should investigate and remove the
> cause of the error in your initialization file.
With emacs --debug-init, emacs asks also an output file.
the following last lines of (i.e. the end of my orgexport.el) are
necessary to org-ref :
(let ((org-export-with-broken-links t)
(org-latex-pdf-process
'("pdflatex -interaction nonstopmode -shell-escape
-output-directory %o %f"
"bibtex %b"
"makeindex %b"
"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f"
"pdflatex -interaction nonstopmode -shell-escape -output-directory %o
%f")))
(org-open-file (org-latex-export-to-pdf)))
It also seems obvious that "org-open-file" is the cause of my (small)
problem.
Your help will be welcome.
All the best,
Jo.
^ permalink raw reply [flat|nested] 4+ messages in thread[parent not found: <CAJ51ETrH-EbRmdQht3MVUqNZS2aJ3krvez2fPcgnLQM_LN+O5A@mail.gmail.com>]
* Re: org-ref 3 setup [not found] ` <CAJ51ETrH-EbRmdQht3MVUqNZS2aJ3krvez2fPcgnLQM_LN+O5A@mail.gmail.com> @ 2022-07-20 12:51 ` Joseph Vidal-Rosset [not found] ` <CAJ51ETp3gyA9ts0eZd=sm7er40B2RouL5A=p-mYxUcLjscjC-A@mail.gmail.com> 0 siblings, 1 reply; 4+ messages in thread From: Joseph Vidal-Rosset @ 2022-07-20 12:51 UTC (permalink / raw) To: John Kitchin; +Cc: org-mode-email Le 20/07/2022 à 14:15, John Kitchin a écrit : > I assume you are trying something new here? Not really; my setup worked to export to pdf via latex with org-ref, but it is no longer the case, and I do not know why. > the problem is that block is executed and it should not be. That is a > temporary bit of code for export within an org-file. the error comes > from it trying to export an elisp file to pdf. > > The only correct thing you could do is this: > > (setq org-export-with-broken-links t > org-latex-pdf-process > '("pdflatex -interaction nonstopmode -shell-escape > -output-directory %o %f" > "bibtex %b" > "makeindex %b" > "pdflatex -interaction nonstopmode -shell-escape > -output-directory %o %f" > "pdflatex -interaction nonstopmode -shell-escape > -output-directory %o > %f")) Thanks ! now emacs --deamon works smoothly, but unfortunately I get this message when I try to export my org file via pdflatex: > Wrote /home/joseph/Dropbox/Mes_articles_soumis/jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.tex > Processing LaTeX file jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.tex... > This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) > \write18 enabled. > ** > ! End of file on the terminal... why? > /bin/bash: ligne 2: -output-directory : commande introuvable > This is BibTeX, Version 0.99d (TeX Live 2020/Debian) > The top-level auxiliary file: jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.aux > The style file: smfplain.bst > I found no \citation commands---while reading file jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.aux > I found no \bibdata command---while reading file jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.aux > (There were 2 error messages) > Couldn't find input index file jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr nor jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.idx. > Usage: makeindex [-ilqrcgLT] [-s sty] [-o ind] [-t log] [-p num] [idx0 idx1 ...] > PDF file produced with errors. The pdf file indeed is not what that could be expected. :( If I come back to (let ((org-export-with-broken-links t) (org-latex-pdf-process '("pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f" "bibtex %b" "makeindex %b" "pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f" "pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f"))) (org-open-file (org-latex-export-to-pdf))) in ~/.emacs.d/personal/myorgexport.el then emacs --daemon protests, but the export works correctly... All the best, Jo. ^ permalink raw reply [flat|nested] 4+ messages in thread
[parent not found: <CAJ51ETp3gyA9ts0eZd=sm7er40B2RouL5A=p-mYxUcLjscjC-A@mail.gmail.com>]
* Re: org-ref 3 setup [not found] ` <CAJ51ETp3gyA9ts0eZd=sm7er40B2RouL5A=p-mYxUcLjscjC-A@mail.gmail.com> @ 2022-07-20 14:48 ` Joseph Vidal-Rosset 2022-07-20 18:20 ` John Kitchin 0 siblings, 1 reply; 4+ messages in thread From: Joseph Vidal-Rosset @ 2022-07-20 14:48 UTC (permalink / raw) To: John Kitchin; +Cc: org-mode-email, bozhidar Le 20/07/2022 à 16:20, Joseph Vidal-Rosset a écrit : > > > Le 20/07/2022 à 15:38, John Kitchin a écrit : > >> (let ((org-export-with-broken-links t) >> (org-latex-pdf-process >> '("pdflatex -interaction nonstopmode -shell-escape >> -output-directory %o %f" >> "bibtex %b" >> "makeindex %b" >> "pdflatex -interaction nonstopmode -shell-escape >> -output-directory %o %f" >> "pdflatex -interaction nonstopmode -shell-escape >> -output-directory %o >> %f"))) >> (org-open-file (org-latex-export-to-pdf))) >> >> >> this doesn't do anything in your init file to change anything. it only >> temporarily (let) defines some variables, and then tries to export the >> current buffer (an elisp file) to pdf and open it. that is a mistake >> to try. > > You are certainly right. I believe that these lines block a > configuration file that is responsible for the fact that the export via > pdflatex does not work correctly. This file is therefore loaded after > myorgexport.el, like mysnippets.el that is not loaded, for example. It > is also possible that myorgexport.el itself is somewhere incorrect. > > I will go to make tests, I'll keep you informed. The BIG advantage of launching Emacs Prelude with emacs --daemon is that it is possible to identify (with your help in this case, John) the reason of a problem in such or such setup, every personal setup being located in possible several small files ~/.emacs.d/personal/myfile1.el, ~/.emacs.d/personal/myfile2.el, etc. (I am really thankful to Bozhidar Batsov - hence this cc. to his email address - and to all the contributors of Prelude Emacs, and I recommend this nice starter kit for Emacs.) John, you kindly gave me a solution to get the bibliography in an html email exported via gnus and orgmode, and in my .emacs.d/personal/myorgmime.el I had this line of code: > (setq org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer)) ;; to get the bibliography in email (thanks to John Kitchin) Deactivated, the export in pdflatex works correctly for the bibliography... I now have to find a coherent way to get both exports of bibliography... Many thanks John for your so kind, so constant, and so patient help ! All the best, Jo. ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: org-ref 3 setup 2022-07-20 14:48 ` Joseph Vidal-Rosset @ 2022-07-20 18:20 ` John Kitchin 0 siblings, 0 replies; 4+ messages in thread From: John Kitchin @ 2022-07-20 18:20 UTC (permalink / raw) To: Joseph Vidal-Rosset; +Cc: org-mode-email, bozhidar [-- Attachment #1: Type: text/plain, Size: 3368 bytes --] indeed, you should only use that before parsing hook for non-latex exports. See the documentation for org-export-before-parsing-hook. You need to write a function that takes one argument and does nothing for latex, and calls the csl processor otherwise. perhaps something like this: (defun org-ref-preprocessing (backend) (unless (eq backend 'latex) (org-ref-csl-preprocess-buffer backend))) (setq org-export-before-parsing-hook '(org-ref-preprocessing)) John ----------------------------------- Professor John Kitchin (he/him/his) Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin https://kitchingroup.cheme.cmu.edu https://pointbreezepubs.gumroad.com/ pycse bookstore On Wed, Jul 20, 2022 at 10:48 AM Joseph Vidal-Rosset < joseph@vidal-rosset.net> wrote: > > Le 20/07/2022 à 16:20, Joseph Vidal-Rosset a écrit : > > > > > > Le 20/07/2022 à 15:38, John Kitchin a écrit : > > > >> (let ((org-export-with-broken-links t) > >> (org-latex-pdf-process > >> '("pdflatex -interaction nonstopmode -shell-escape > >> -output-directory %o %f" > >> "bibtex %b" > >> "makeindex %b" > >> "pdflatex -interaction nonstopmode -shell-escape > >> -output-directory %o %f" > >> "pdflatex -interaction nonstopmode -shell-escape > >> -output-directory %o > >> %f"))) > >> (org-open-file (org-latex-export-to-pdf))) > >> > >> > >> this doesn't do anything in your init file to change anything. it only > >> temporarily (let) defines some variables, and then tries to export the > >> current buffer (an elisp file) to pdf and open it. that is a mistake > >> to try. > > > > You are certainly right. I believe that these lines block a > > configuration file that is responsible for the fact that the export via > > pdflatex does not work correctly. This file is therefore loaded after > > myorgexport.el, like mysnippets.el that is not loaded, for example. It > > is also possible that myorgexport.el itself is somewhere incorrect. > > > > I will go to make tests, I'll keep you informed. > > The BIG advantage of launching Emacs Prelude with emacs --daemon is that > it is possible to identify (with your help in this case, John) the > reason of a problem in such or such setup, every personal setup being > located in possible several small files ~/.emacs.d/personal/myfile1.el, > ~/.emacs.d/personal/myfile2.el, etc. > (I am really thankful to Bozhidar Batsov - hence this cc. to his email > address - and to all the contributors of Prelude Emacs, and I recommend > this nice starter kit for Emacs.) > > John, you kindly gave me a solution to get the bibliography in an html > email exported via gnus and orgmode, and in my > .emacs.d/personal/myorgmime.el I had this line of code: > > > (setq org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer)) > ;; to get the bibliography in email (thanks to John Kitchin) > > Deactivated, the export in pdflatex works correctly for the > bibliography... I now have to find a coherent way to get both exports of > bibliography... > > Many thanks John for your so kind, so constant, and so patient help ! > > All the best, > > Jo. > > [-- Attachment #2: Type: text/html, Size: 4510 bytes --] ^ permalink raw reply [flat|nested] 4+ messages in thread
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2022-07-20 9:00 org-ref 3 setup Joseph Vidal-Rosset
[not found] ` <CAJ51ETrH-EbRmdQht3MVUqNZS2aJ3krvez2fPcgnLQM_LN+O5A@mail.gmail.com>
2022-07-20 12:51 ` Joseph Vidal-Rosset
[not found] ` <CAJ51ETp3gyA9ts0eZd=sm7er40B2RouL5A=p-mYxUcLjscjC-A@mail.gmail.com>
2022-07-20 14:48 ` Joseph Vidal-Rosset
2022-07-20 18:20 ` John Kitchin
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