* org-ref 3 setup
@ 2022-07-20 9:00 Joseph Vidal-Rosset
[not found] ` <CAJ51ETrH-EbRmdQht3MVUqNZS2aJ3krvez2fPcgnLQM_LN+O5A@mail.gmail.com>
0 siblings, 1 reply; 4+ messages in thread
From: Joseph Vidal-Rosset @ 2022-07-20 9:00 UTC (permalink / raw)
To: John Kitchin; +Cc: org-mode-email
Hello John, (cc. list emacs-orgmode)
I have a problem with my emacs setup that is in relation with org-ref 3.
My emacs version is 29.0.50, via Prelude emacs, and my emacs is
launched with "emacs --daemon" .
Here is the error:
> Loading /home/joseph/.emacs.d/personal/myorgexport.el (source)...
> Output file:
> Warning (initialization): An error occurred while loading ‘/home/joseph/.emacs.d/init.elc’:
>
> Wrong type argument: stringp, nil
>
> To ensure normal operation, you should investigate and remove the
> cause of the error in your initialization file.
With emacs --debug-init, emacs asks also an output file.
the following last lines of (i.e. the end of my orgexport.el) are
necessary to org-ref :
(let ((org-export-with-broken-links t)
(org-latex-pdf-process
'("pdflatex -interaction nonstopmode -shell-escape
-output-directory %o %f"
"bibtex %b"
"makeindex %b"
"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f"
"pdflatex -interaction nonstopmode -shell-escape -output-directory %o
%f")))
(org-open-file (org-latex-export-to-pdf)))
It also seems obvious that "org-open-file" is the cause of my (small)
problem.
Your help will be welcome.
All the best,
Jo.
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: org-ref 3 setup
[not found] ` <CAJ51ETrH-EbRmdQht3MVUqNZS2aJ3krvez2fPcgnLQM_LN+O5A@mail.gmail.com>
@ 2022-07-20 12:51 ` Joseph Vidal-Rosset
[not found] ` <CAJ51ETp3gyA9ts0eZd=sm7er40B2RouL5A=p-mYxUcLjscjC-A@mail.gmail.com>
0 siblings, 1 reply; 4+ messages in thread
From: Joseph Vidal-Rosset @ 2022-07-20 12:51 UTC (permalink / raw)
To: John Kitchin; +Cc: org-mode-email
Le 20/07/2022 à 14:15, John Kitchin a écrit :
> I assume you are trying something new here?
Not really; my setup worked to export to pdf via latex with org-ref, but
it is no longer the case, and I do not know why.
> the problem is that block is executed and it should not be. That is a
> temporary bit of code for export within an org-file. the error comes
> from it trying to export an elisp file to pdf.
>
> The only correct thing you could do is this:
>
> (setq org-export-with-broken-links t
> org-latex-pdf-process
> '("pdflatex -interaction nonstopmode -shell-escape
> -output-directory %o %f"
> "bibtex %b"
> "makeindex %b"
> "pdflatex -interaction nonstopmode -shell-escape
> -output-directory %o %f"
> "pdflatex -interaction nonstopmode -shell-escape
> -output-directory %o
> %f"))
Thanks ! now emacs --deamon works smoothly, but unfortunately I get this
message when I try to export my org file via pdflatex:
> Wrote /home/joseph/Dropbox/Mes_articles_soumis/jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.tex
> Processing LaTeX file jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.tex...
> This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex)
> \write18 enabled.
> **
> ! End of file on the terminal... why?
> /bin/bash: ligne 2: -output-directory : commande introuvable
> This is BibTeX, Version 0.99d (TeX Live 2020/Debian)
> The top-level auxiliary file: jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.aux
> The style file: smfplain.bst
> I found no \citation commands---while reading file jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.aux
> I found no \bibdata command---while reading file jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.aux
> (There were 2 error messages)
> Couldn't find input index file jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr nor jvr-bivalence-futurs-contingents-intuitionnisme-smfart-fr.idx.
> Usage: makeindex [-ilqrcgLT] [-s sty] [-o ind] [-t log] [-p num] [idx0 idx1 ...]
> PDF file produced with errors.
The pdf file indeed is not what that could be expected.
:(
If I come back to
(let ((org-export-with-broken-links t)
(org-latex-pdf-process
'("pdflatex -interaction nonstopmode -shell-escape
-output-directory %o %f"
"bibtex %b"
"makeindex %b"
"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f"
"pdflatex -interaction nonstopmode -shell-escape -output-directory %o
%f")))
(org-open-file (org-latex-export-to-pdf)))
in ~/.emacs.d/personal/myorgexport.el
then emacs --daemon protests, but the export works correctly...
All the best,
Jo.
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: org-ref 3 setup
[not found] ` <CAJ51ETp3gyA9ts0eZd=sm7er40B2RouL5A=p-mYxUcLjscjC-A@mail.gmail.com>
@ 2022-07-20 14:48 ` Joseph Vidal-Rosset
2022-07-20 18:20 ` John Kitchin
0 siblings, 1 reply; 4+ messages in thread
From: Joseph Vidal-Rosset @ 2022-07-20 14:48 UTC (permalink / raw)
To: John Kitchin; +Cc: org-mode-email, bozhidar
Le 20/07/2022 à 16:20, Joseph Vidal-Rosset a écrit :
>
>
> Le 20/07/2022 à 15:38, John Kitchin a écrit :
>
>> (let ((org-export-with-broken-links t)
>> (org-latex-pdf-process
>> '("pdflatex -interaction nonstopmode -shell-escape
>> -output-directory %o %f"
>> "bibtex %b"
>> "makeindex %b"
>> "pdflatex -interaction nonstopmode -shell-escape
>> -output-directory %o %f"
>> "pdflatex -interaction nonstopmode -shell-escape
>> -output-directory %o
>> %f")))
>> (org-open-file (org-latex-export-to-pdf)))
>>
>>
>> this doesn't do anything in your init file to change anything. it only
>> temporarily (let) defines some variables, and then tries to export the
>> current buffer (an elisp file) to pdf and open it. that is a mistake
>> to try.
>
> You are certainly right. I believe that these lines block a
> configuration file that is responsible for the fact that the export via
> pdflatex does not work correctly. This file is therefore loaded after
> myorgexport.el, like mysnippets.el that is not loaded, for example. It
> is also possible that myorgexport.el itself is somewhere incorrect.
>
> I will go to make tests, I'll keep you informed.
The BIG advantage of launching Emacs Prelude with emacs --daemon is that
it is possible to identify (with your help in this case, John) the
reason of a problem in such or such setup, every personal setup being
located in possible several small files ~/.emacs.d/personal/myfile1.el,
~/.emacs.d/personal/myfile2.el, etc.
(I am really thankful to Bozhidar Batsov - hence this cc. to his email
address - and to all the contributors of Prelude Emacs, and I recommend
this nice starter kit for Emacs.)
John, you kindly gave me a solution to get the bibliography in an html
email exported via gnus and orgmode, and in my
.emacs.d/personal/myorgmime.el I had this line of code:
> (setq org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer)) ;; to get the bibliography in email (thanks to John Kitchin)
Deactivated, the export in pdflatex works correctly for the
bibliography... I now have to find a coherent way to get both exports of
bibliography...
Many thanks John for your so kind, so constant, and so patient help !
All the best,
Jo.
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: org-ref 3 setup
2022-07-20 14:48 ` Joseph Vidal-Rosset
@ 2022-07-20 18:20 ` John Kitchin
0 siblings, 0 replies; 4+ messages in thread
From: John Kitchin @ 2022-07-20 18:20 UTC (permalink / raw)
To: Joseph Vidal-Rosset; +Cc: org-mode-email, bozhidar
[-- Attachment #1: Type: text/plain, Size: 3368 bytes --]
indeed, you should only use that before parsing hook for non-latex exports.
See the documentation for org-export-before-parsing-hook. You need to
write a function that takes one argument and does nothing for latex, and
calls the csl processor otherwise.
perhaps something like this:
(defun org-ref-preprocessing (backend)
(unless (eq backend 'latex)
(org-ref-csl-preprocess-buffer backend)))
(setq org-export-before-parsing-hook '(org-ref-preprocessing))
John
-----------------------------------
Professor John Kitchin (he/him/his)
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
https://kitchingroup.cheme.cmu.edu
https://pointbreezepubs.gumroad.com/ pycse bookstore
On Wed, Jul 20, 2022 at 10:48 AM Joseph Vidal-Rosset <
joseph@vidal-rosset.net> wrote:
>
> Le 20/07/2022 à 16:20, Joseph Vidal-Rosset a écrit :
> >
> >
> > Le 20/07/2022 à 15:38, John Kitchin a écrit :
> >
> >> (let ((org-export-with-broken-links t)
> >> (org-latex-pdf-process
> >> '("pdflatex -interaction nonstopmode -shell-escape
> >> -output-directory %o %f"
> >> "bibtex %b"
> >> "makeindex %b"
> >> "pdflatex -interaction nonstopmode -shell-escape
> >> -output-directory %o %f"
> >> "pdflatex -interaction nonstopmode -shell-escape
> >> -output-directory %o
> >> %f")))
> >> (org-open-file (org-latex-export-to-pdf)))
> >>
> >>
> >> this doesn't do anything in your init file to change anything. it only
> >> temporarily (let) defines some variables, and then tries to export the
> >> current buffer (an elisp file) to pdf and open it. that is a mistake
> >> to try.
> >
> > You are certainly right. I believe that these lines block a
> > configuration file that is responsible for the fact that the export via
> > pdflatex does not work correctly. This file is therefore loaded after
> > myorgexport.el, like mysnippets.el that is not loaded, for example. It
> > is also possible that myorgexport.el itself is somewhere incorrect.
> >
> > I will go to make tests, I'll keep you informed.
>
> The BIG advantage of launching Emacs Prelude with emacs --daemon is that
> it is possible to identify (with your help in this case, John) the
> reason of a problem in such or such setup, every personal setup being
> located in possible several small files ~/.emacs.d/personal/myfile1.el,
> ~/.emacs.d/personal/myfile2.el, etc.
> (I am really thankful to Bozhidar Batsov - hence this cc. to his email
> address - and to all the contributors of Prelude Emacs, and I recommend
> this nice starter kit for Emacs.)
>
> John, you kindly gave me a solution to get the bibliography in an html
> email exported via gnus and orgmode, and in my
> .emacs.d/personal/myorgmime.el I had this line of code:
>
> > (setq org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer))
> ;; to get the bibliography in email (thanks to John Kitchin)
>
> Deactivated, the export in pdflatex works correctly for the
> bibliography... I now have to find a coherent way to get both exports of
> bibliography...
>
> Many thanks John for your so kind, so constant, and so patient help !
>
> All the best,
>
> Jo.
>
>
[-- Attachment #2: Type: text/html, Size: 4510 bytes --]
^ permalink raw reply [flat|nested] 4+ messages in thread
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2022-07-20 9:00 org-ref 3 setup Joseph Vidal-Rosset
[not found] ` <CAJ51ETrH-EbRmdQht3MVUqNZS2aJ3krvez2fPcgnLQM_LN+O5A@mail.gmail.com>
2022-07-20 12:51 ` Joseph Vidal-Rosset
[not found] ` <CAJ51ETp3gyA9ts0eZd=sm7er40B2RouL5A=p-mYxUcLjscjC-A@mail.gmail.com>
2022-07-20 14:48 ` Joseph Vidal-Rosset
2022-07-20 18:20 ` John Kitchin
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