From: Kevin Emerson <kemerson@uoregon.edu>
To: emacs-orgmode@gnu.org
Subject: odt export error
Date: Tue, 13 Dec 2011 19:03:03 -0800 [thread overview]
Message-ID: <CALRehz-1DAYcBnD2ybyi3ODE5eF+zQRk5TA3FpW8WM=LJdAFyw@mail.gmail.com> (raw)
[-- Attachment #1: Type: text/plain, Size: 951 bytes --]
Hello all,
I am relatively new to org-mode, but I am certainly a convert - a
great piece of work! I usually export things as html, but my employer
always wants updates in doc format. I was hoping to use the new odt
export functionality and then I can save the odt as a doc file. This
works for me sometimes - but not always.
I can not pinpoint exactly what yields the error, but it reads "Format
error discovered in the file in sub-document styles.xml at
415,108(row,col) when the file attempts to open in openoffice 3.2. I
am using org-mode 7.6.
I have attached my org file and the resulting odt file.
Any thoughts would be greatly appreciated.
Cheers,
Kevin
--
------
------
Kevin J. Emerson, Ph.D.
Post-Doctoral Researcher, Bradshaw-Holzapfel Lab
Institute of Ecology and Evolution
335 Pacific Hall
5289 University of Oregon
Eugene, OR 97403
web: http://www.uoregon.edu/~kemerson
email: kemerson@uoregon.edu, kevin.j.emerson@gmail.com
--
[-- Attachment #2: 2011-12-13-periodAnnotationTranscriptome2.odt --]
[-- Type: application/vnd.oasis.opendocument.text, Size: 10706 bytes --]
[-- Attachment #3: 2011-12-13-periodAnnotationTranscriptome2.org --]
[-- Type: application/octet-stream, Size: 5349 bytes --]
# 2011-12-13-periodAnnotationTranscriptome2.org
#+TITLE: Period annotation (Assembly 2)
#+AUTHOR: Kevin Emerson
#+OPTIONS: H:2 num:t toc:t \n:nil @:t ::t |:t ^:t -:t f:t *:t <:t
#+OPTIONS: TeX:t LaTeX:t skip:nil d:nil todo:nil pri:nil tags:not-in-toc
#+STYLE: <link rel="stylesheet" type="text/css" href="org.css" />
* Locate sequences that are associated with /period/
Using OrthoDB ID: [[http://cegg.unige.ch/orthodb4/results?searchtext=EOG4V41PZ&level=Aa_Ag_Am_Ap_Bm_Cq_Da_De_Dg_Dme_Dmo_Dpe_Dps_Dpu_Dse_Dsi_Dv_Dw_Dy_Is_Lh_Nvi_Pb_Ph_Tc&tree=Arth&swaptree=][EOG4V41PZ]]
** contig15855
*** Sequence
>contig15855 length=258 numreads=17 gene=isogroup02170 status=isotig
ACATTATCCAGCCATGGTGGATtAGGACGACgTTTtACGCGGCTCGCGCTGTCCCAGTCG
CCATCGTTGACTATCCgTTTCAACGGATCGTCACTATCGGACGAGTTATCCGTCTTCAGG
AAGCTTGAGTAGAAaCTAgaCAAACTtGAAATATCCATGTCGTCGTTGATtCCcGGTGGA
GGATAGATGGTTCTACGGCTGGCTGGTTTATCGGTATCTTCTAGCTGGAAGCCTCCGCcG
ACGTTcAATACTtGTGTC
** contig24967
*** Sequence
>contig24967 length=80 numreads=793 gene=isogroup00699 status=isotig
GAACTTGTTGCGGTTGGTATTGCGGCTGATATTGCCGAGCTACCTGCTGCTGTTGGGGCT
GCTGGAATTGTCGTTGAATC
** F5BTJ3O01A331S
*** Sequence
>F5BTJ3O01A331S rank=0100662 x=339.0 y=3054.0 length=527 trimmed=11-527
GAGGCGCCGCTGGGAAATGGCGAATTCGAAACGAACAGCGTTCGAACCATTCTGTTGATA
GTTTCTGCTACTCCAATCAAGAGTGTCTTCAAAGTTCCCAACGAACAGTTCAGCGATAAC
GCAATGAAATTCACTACCAGACACACGACGTGCGGAGTGTTGAGTTACGTCGATGGGAAT
TCGGCAGAGTTGATCGGGTATCTACCGCAGGACATCCTGGGACGCTCGGTAATGGAGTTC
TATCACCCAGAGGACATGACCATTTTGAAAAACGTTTACGAGACAGTTATGGTGAAAGGA
CAGACGGCTGGAGCATCGTTCGTCAGTCAACCATATCGCTTTTTGATCAACAATGGATGT
TTTATAGTGTTGCAAACGGAATGGACCAGTTTCGTTAACCCGTGGTCCAGAGGGCTTGAG
TTTGTAATAGGACATCACCAGATATTGGAAGGACCCGTGATTCCGGATGTGTTTGCTTCG
AATGAAAACTCGCGCACATTTTCCAATGAGCTAATGG
** F5BTJ3O01D9IE3
*** Sequence
>F5BTJ3O01D9IE3 rank=0059719 x=1631.0 y=1773.5 length=428 trimmed=11-417
TGATCGGGTATCTACCGCAGGACATCCTGGGACGCTCGGTAATGGAGTTCTATCACCCAG
AGGACATGACCATTTTGAAAAACGTTTACGAGACAGTTATGGAGAAAGGACAGACGGCTG
GAGCATCGTTCGTCAGTCAACCATATCGCTTTTTGATCAACAATGGATGTTTCATAGTGT
TGCAAACGGAATGGACCAGTTTCGTTAACCCGTGGTCCAGAGAGCTTGAGTTTGTAATAG
GACATCACCAGATATTGGAAGGACCCGTGATTCCGGATGTGTTTGCTTCGAATGAAAACT
CGCGCACATTTTCCAATGAGCTAATGGCATCCGCGAAAAGGATGGAGGAACATATTCTGC
GTATTCTGAAGGAACCGGTAGCAAAGCCCTCGGATAAGGTTAAACAG
** F5BTJ3O01DOJYE
*** Sequence
>F5BTJ3O01DOJYE rank=0475003 x=1392.5 y=2932.0 length=534 trimmed=11-534
TTGATGATTGCCGATTCACATGCTTTCTTGAATATGGATATATCCTCGGGGTGATAAAGT
TCCATTATCGAACGGCCGAGAATATCTTGCGGTAAATAGCCGATTGATTTGACAGAATTT
TCATCCACATATTTTAGTATTCCACCGATCGTGTGGCGGGTGCTGAACCGCAGTTGTTTA
TTGTCCAACGATTCATTAGGCTCTTTATAAATACTAAAAAACCGGTTGAGCGCAGATCAC
TAGTATAATATTCGTGGCACTCTTCGAGCTCGTAAGTTCTTTGCCTTCTAAAGGTGCATT
CCGGAACATTAAAGTCAACCTGTACGGTTGGTAGATTACGGAAGACTTGGTAATACAGAA
ACCTACATTCCTTAATCCTCGATACTTCCGTAACATGACGTACAGAAAATTTGTTTGTTC
TTTCTGATTAGAATCACTCAGGGCGAGCATCACGTTCGAGGTAATTTGCTTAGAAAATGT
CGCCGATCTCTGGGATGAACGAAGTCAATGAAGGATCTGCCGAG
** F5BTJ3O02HC7W4
*** Sequence
>F5BTJ3O02HC7W4 rank=0548528 x=2903.0 y=3526.5 length=424 trimmed=11-424
CAGCAGCACGGATGCCTCCTCCGGCAGTATGCTTCCATCATCGTTAACCGAAGAAATACT
CTGTCAGCACAACGAAGATATGCAGAAGGTGATGCTGAAGCGTCATCGTGAGGCAAGAAC
ATTAGCACGTAGCACAGAGAAGAACAAAAAAGGACCTCCGGAGAAAGCGCAAGTCTGTGC
CCACGGTGTAAAAAGNGGATCATCTCATTCCTGGGAAGGAGATATCCAAAAAACGGTTAG
ACATCAGCACAAGCAGACTGTTGCTTCGAACATGAAGAATCAACCCCTACACGCAGTAAC
ACCCTCGAATCCAACACCAATATCATCAGCCGTTGTCACAATGCCGTCAAGGACAGTCAT
AACAACTGCGGCCTCTTCGGCTGCACCCCAAGGTTCAACCTTGCCGTACAGTTT
** F5BTJ3O02HOBEW
*** Sequence
>F5BTJ3O02HOBEW rank=0246219 x=3030.0 y=1078.0 length=493 trimmed=11-482
TCAAATCCCGACGTATTCGCTACTGGCGTCTCGGAACTCGGAGCATTGCACAGCTTTCCG
GAAGAGCTTCTCAAGGAGGCGAAGTCGGTGGAAGAACAAATTGTACAACTTTTGAAAAGA
CCGATCGTTGAGTCCCCAAGTGAGAAGAAGCAAATATTTTTAAAGCAATGCAAAACGTTA
AACGCTTTCATGGAACAAATAATCAGTGAGATGACCGGTTCCAAAACAAAATTCACACTC
CCTAGCGATTCGGAATTTACTTCTTCTAAGCGCGACTCTATTATCATTGGAGAGGTATCT
CCACATCATGAAGGATTGGATAGCAAAACCACATCCGACACCCTGCTAAGCTATAATCAG
TTGAACTATAATGATAATATTCAGAGATTTTTTGTACAGTTGCCCAGTCATTAACGTATG
TGATCCTTTAAAACCTGGCAGTTCTACGGATGTGAATCTATTTGTCTATAGG
** F5BTJ3O02HSKYJ
*** Sequence
>F5BTJ3O02HSKYJ rank=0659698 x=3078.0 y=3465.0 length=192 trimmed=11-192
AACGGAGTGGCAGTTCCAAATCCCAACACAGTGGTAGTAATTCATCCGGCAGCAGCGGCT
ATGGCGGCAAAAGCAACAGTCAGCCATCCACAGCCGGAAGTACCTTCCACCCACCAGGCA
AACATGCCAAGGAAAAAGCCGCAAAAAGAAGGACAAGGAAGCGAAAACTTTAATCGATTC
CT
* PERIOD alignments
Alignments were all performed using Geneious aligner. Alignments
were done on amino acid sequences. Initially, for each sequence,
all six translations were made and an amino acid alignment was used
to determine the correct reading frame. Then, when the correct
reading frame was known for each sequence, a final alignment was
made. Note that there are a few annotations along with two of the
sequences. F5BTJ3O01DOJYE shows a 'half-good' alignment with the
second portion of hte sequence aligning perfectly in the PAS domain,
and the rest of the sequence not aligning at all with the other
mosquito sequences (which are conserved). Also, the alignemnt for
F5BTJ3O02HOBEW is not very strong.
# [[./images/per_alignments.png]]
next reply other threads:[~2011-12-14 3:03 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2011-12-14 3:03 Kevin Emerson [this message]
2011-12-14 8:38 ` odt export error Christian Moe
2011-12-14 9:09 ` Eric S Fraga
2011-12-15 7:45 ` Jambunathan K
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://www.orgmode.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to='CALRehz-1DAYcBnD2ybyi3ODE5eF+zQRk5TA3FpW8WM=LJdAFyw@mail.gmail.com' \
--to=kemerson@uoregon.edu \
--cc=emacs-orgmode@gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/emacs/org-mode.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).