Re: org-cite and export to ODT

[John Kitchin <jkitchin@andrew.cmu.edu>]

[-- Attachment #1: Type: text/plain, Size: 4742 bytes --]

you are still not getting the directions. You don't export with C-c Ce oo
here. You run that src block by putting your cursor in it and typing C-c
C-c to run it.

For org-ref, you have to use a preprocessing hook to replace the cite links
with the csl derived links before the export is done. That is what the src
block does. It temporarily defines org-export-before-parsing-hook to run
those three hook functions before making an odt file.

Alternatively you can do C-c C-e ro which will use the org-ref exporter
that at least runs the  org-ref csl preprocessor.

John

-----------------------------------
Professor John Kitchin (he/him/his)
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu



On Wed, Dec 15, 2021 at 6:58 PM Xianwen Chen (陈贤文) <xianwen.chen@gmail.com>
wrote:

> Thank you John. I'm not sure why it does not work. Below is the minimal
> example I created, using your example. I ran C-e o o to export to ODT. The
> resulted ODT file didn't have the reference.
>
> #+title: A basic example of org-ref for csl export
> #+options: toc:nil
> #+csl-style: apa-5th-edition.csl
> #+csl-locale: en-US
>
> * Bibliography
>
> bibliography:~/data/library/bibliography/biblatex/biblatex.bib
>
> cite:bayulken-et-al-2020-nbs-climate_change-pandemics
>
> * build :noexport:
>
> #+BEGIN_SRC emacs-lisp :results silent
> (let ((org-export-before-parsing-hook '(org-ref-cite-natmove ;; do this
> first
> org-ref-csl-preprocess-buffer
> org-ref-refproc)))
>   (org-open-file (org-odt-export-to-odt) 'system))
> #+END_SRC
>
>
> On Wed, Dec 15, 2021 at 10:16 PM John Kitchin <jkitchin@andrew.cmu.edu>
> wrote:
>
>> That code does not belong in your .emacs file. It should be in an
>> emacs-lisp block in your org-file like it is in the example. You should run
>> it from the org file.
>>
>>
>>
>>
>> John
>>
>> -----------------------------------
>> Professor John Kitchin (he/him/his)
>> Doherty Hall A207F
>> Department of Chemical Engineering
>> Carnegie Mellon University
>> Pittsburgh, PA 15213
>> 412-268-7803
>> @johnkitchin
>> http://kitchingroup.cheme.cmu.edu
>>
>>
>>
>> On Wed, Dec 15, 2021 at 5:12 PM Xianwen Chen (陈贤文) <
>> xianwen.chen@gmail.com> wrote:
>>
>>> Thank you all for the responses. I have to upgrade from orgmode 9.4.4 to
>>> 9.5 first, to try out org-cite.
>>>
>>> I tried
>>> https://github.com/jkitchin/org-ref/blob/master/examples/basic-csl.org#opendocument.
>>> I added the following codes to my .emacs:
>>>
>>> (let ((org-export-before-parsing-hook '(org-ref-cite-natmove ;; do this
>>> first
>>> org-ref-csl-preprocess-buffer
>>> org-ref-refproc)))
>>>   (org-open-file (org-odt-export-to-odt) 'system))
>>>
>>> I tried to eval-region, after selecting these codes. I got the complain
>>> that org-ref-cite-natmove's function definition is void.
>>>
>>> Do I need to install or require something other than cite-ref?
>>>
>>> Xianwen
>>>
>>> On Thu, Dec 9, 2021 at 2:57 PM John Kitchin <jkitchin@andrew.cmu.edu>
>>> wrote:
>>>
>>>> If you are trying to use org-ref for this see
>>>> https://www.youtube.com/watch?v=rRR-5NSpKyE and this example:
>>>> https://github.com/jkitchin/org-ref/blob/master/examples/basic-csl.org#opendocument.
>>>> You need to use a preprocessing hook (org-ref-csl-preprocess-buffer) with
>>>> org-ref to get the citations and bibliography .
>>>> John
>>>>
>>>> -----------------------------------
>>>> Professor John Kitchin (he/him/his)
>>>> Doherty Hall A207F
>>>> Department of Chemical Engineering
>>>> Carnegie Mellon University
>>>> Pittsburgh, PA 15213
>>>> 412-268-7803
>>>> @johnkitchin
>>>> http://kitchingroup.cheme.cmu.edu
>>>>
>>>>
>>>>
>>>> On Thu, Dec 9, 2021 at 4:54 AM Xianwen Chen (陈贤文) <
>>>> xianwen.chen@gmail.com> wrote:
>>>>
>>>>> I have been using org-ref and biblatex. They export well to PDF,
>>>>> through LaTeX. I am able to export to ODT as well. However, I'm not able to
>>>>> have the bibliography or the references in the produced ODT.
>>>>>
>>>>> I searched online and found this tutorial:
>>>>> https://kjambunathan.github.io/org-mode-ox-odt/Bibliography-and-Citations-in-ODT-export.html.
>>>>> However, when following through the tutorial, I wasn't able to find
>>>>> ox-jabref.
>>>>>
>>>>> Thinking about the new org-cite, which is orgmode's native citation
>>>>> solution, I'm wondering if it would be easier to use org-cite within
>>>>> orgmode and export to ODT? A small example with configuration suggestion
>>>>> will be highly appreciated!
>>>>>
>>>>> Xianwen
>>>>>
>>>>

[-- Attachment #2: Type: text/html, Size: 10215 bytes --]