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* Org Babel and R issue with pdf latex export
@ 2011-02-28  4:08 Ben Ward
  2011-02-28  5:35 ` Dan Davison
  0 siblings, 1 reply; 8+ messages in thread
From: Ben Ward @ 2011-02-28  4:08 UTC (permalink / raw)
  To: emacs-orgmode

Hi,

I recently installed emacs, org-mode fresh on a new install of Arch
Linux. Before I had it working on Ubuntu.

I've installed everything as before and used the same .emacs file I had,
but if I use org to write out some R script and export to pdf via latex,
then I get an empty pdf document, with only the title and Contents
heading. However if I export to anything else such as html it works, and
shows me code and results. I've tried even installing a version of org
mode from source, using the build system my distro has, so as it's made
and installed to exactly the right place, but I still don't have any
luck. The texlive version I'm using is from my distro's package manager.
Using C-c C-c to evaluate on the fly works. I had an issue getting org
and babel to work with R on Windows 7 as well, but it was because
certain tex packages were missing and I recieved a message when I tried
to export, but nothing comes up here. 

Would the recent change:
Org-babel is now inside org, remove (require 'org-babel-init) 
  and alike from your .emacs.
  Look at http://orgmode.org/Changes.html#ob-configuration-changes 
  for overview of the settings.
Be causing the entire issue?

The .tex file I get out is thus:
% Created 2011-02-28 Mon 03:47
\documentclass[11pt]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\providecommand{\alert}[1]{\textbf{#1}}
\begin{document}



\title{Test}
\author{Ben J. Ward}
\date{28 February 2011}
\maketitle

\setcounter{tocdepth}{3}
\tableofcontents
\vspace*{1cm}

\end{document}

Thanks,
Ben W.
(Apologies if this has been sent twice, first time an error occured)

^ permalink raw reply	[flat|nested] 8+ messages in thread
* Re: Org Babel and R issue with pdf latex export
  2011-02-28  4:08 Org Babel and R issue with pdf latex export Ben Ward
@ 2011-02-28  5:35 ` Dan Davison
  2011-02-28  7:07   ` Ben Ward
  0 siblings, 1 reply; 8+ messages in thread
From: Dan Davison @ 2011-02-28  5:35 UTC (permalink / raw)
  To: Ben Ward; +Cc: emacs-orgmode

Ben Ward <benjamin.ward@bathspa.org> writes:

> Hi,
>
> I recently installed emacs, org-mode fresh on a new install of Arch
> Linux. Before I had it working on Ubuntu.
>
> I've installed everything as before and used the same .emacs file I had,
> but if I use org to write out some R script and export to pdf via latex,
> then I get an empty pdf document, with only the title and Contents
> heading. However if I export to anything else such as html it works, and
> shows me code and results.

Hi Ben,

Are you sure this problem concerns babel/R? What happens when you export
an Org document to pdf without any babel stuff?

Can you provide an example Org file that you are having trouble
exporting to pdf? The problem is probably in your local configuration,
so if no-one can jump to the solution then start from a minimal working
config and try to find the part of your .emacs which is causing the
problem.

Dan


> I've tried even installing a version of org
> mode from source, using the build system my distro has, so as it's made
> and installed to exactly the right place, but I still don't have any
> luck. The texlive version I'm using is from my distro's package manager.
> Using C-c C-c to evaluate on the fly works. I had an issue getting org
> and babel to work with R on Windows 7 as well, but it was because
> certain tex packages were missing and I recieved a message when I tried
> to export, but nothing comes up here. 
>
> Would the recent change:
> Org-babel is now inside org, remove (require 'org-babel-init) 
>   and alike from your .emacs.
>   Look at http://orgmode.org/Changes.html#ob-configuration-changes 
>   for overview of the settings.
> Be causing the entire issue?
>
> The .tex file I get out is thus:
> % Created 2011-02-28 Mon 03:47
> \documentclass[11pt]{article}
> \usepackage[utf8]{inputenc}
> \usepackage[T1]{fontenc}
> \usepackage{fixltx2e}
> \usepackage{graphicx}
> \usepackage{longtable}
> \usepackage{float}
> \usepackage{wrapfig}
> \usepackage{soul}
> \usepackage{textcomp}
> \usepackage{marvosym}
> \usepackage{wasysym}
> \usepackage{latexsym}
> \usepackage{amssymb}
> \usepackage{hyperref}
> \tolerance=1000
> \providecommand{\alert}[1]{\textbf{#1}}
> \begin{document}
>
>
>
> \title{Test}
> \author{Ben J. Ward}
> \date{28 February 2011}
> \maketitle
>
> \setcounter{tocdepth}{3}
> \tableofcontents
> \vspace*{1cm}
>
> \end{document}
>
> Thanks,
> Ben W.
> (Apologies if this has been sent twice, first time an error occured)
>
>
> _______________________________________________
> Emacs-orgmode mailing list
> Please use `Reply All' to send replies to the list.
> Emacs-orgmode@gnu.org
> http://lists.gnu.org/mailman/listinfo/emacs-orgmode

^ permalink raw reply	[flat|nested] 8+ messages in thread
* Re: Org Babel and R issue with pdf latex export
  2011-02-28  5:35 ` Dan Davison
@ 2011-02-28  7:07   ` Ben Ward
  2011-02-28 11:24     ` Rainer M Krug
  0 siblings, 1 reply; 8+ messages in thread
From: Ben Ward @ 2011-02-28  7:07 UTC (permalink / raw)
  To: Dan Davison; +Cc: emacs-orgmode

On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
> Ben Ward <benjamin.ward@bathspa.org> writes:
> 
> > Hi,
> >
> > I recently installed emacs, org-mode fresh on a new install of Arch
> > Linux. Before I had it working on Ubuntu.
> >
> > I've installed everything as before and used the same .emacs file I had,
> > but if I use org to write out some R script and export to pdf via latex,
> > then I get an empty pdf document, with only the title and Contents
> > heading. However if I export to anything else such as html it works, and
> > shows me code and results.
> 
> Hi Ben,
> 
> Are you sure this problem concerns babel/R? What happens when you export
> an Org document to pdf without any babel stuff?
> 
> Can you provide an example Org file that you are having trouble
> exporting to pdf? The problem is probably in your local configuration,
> so if no-one can jump to the solution then start from a minimal working
> config and try to find the part of your .emacs which is causing the
> problem.
> 
> Dan
> 
Hi, I've tried exporting an org file that has no code in it to PDF and
it works without any trouble. 

The file I'm trying to export is:
#+TITLE: Test
#+AUTHOR: Ben J. Ward
#+LATEX_CLASS: article
#+BABEL: :session *R* :results output
\pagebreak

Test:

#+begin_src R :exports both
x<-c(1,2,3,4,5)
y<-c(5,10,15,20)
x
y
xy<-(x*y)
xy
#+end_src

I can include my .emacs although it's lengthy.

I uninstalled all of my emacs stuff, and installed it from the vanilla
downloads on their respective sites, and I'm still getting the same
result. I'm considering removing all my tex stuff and installing the
vanilla texlive too.

Thanks,
Ben W.

> 
> > I've tried even installing a version of org
> > mode from source, using the build system my distro has, so as it's made
> > and installed to exactly the right place, but I still don't have any
> > luck. The texlive version I'm using is from my distro's package manager.
> > Using C-c C-c to evaluate on the fly works. I had an issue getting org
> > and babel to work with R on Windows 7 as well, but it was because
> > certain tex packages were missing and I recieved a message when I tried
> > to export, but nothing comes up here. 
> >
> > Would the recent change:
> > Org-babel is now inside org, remove (require 'org-babel-init) 
> >   and alike from your .emacs.
> >   Look at http://orgmode.org/Changes.html#ob-configuration-changes 
> >   for overview of the settings.
> > Be causing the entire issue?
> >
> > The .tex file I get out is thus:
> > % Created 2011-02-28 Mon 03:47
> > \documentclass[11pt]{article}
> > \usepackage[utf8]{inputenc}
> > \usepackage[T1]{fontenc}
> > \usepackage{fixltx2e}
> > \usepackage{graphicx}
> > \usepackage{longtable}
> > \usepackage{float}
> > \usepackage{wrapfig}
> > \usepackage{soul}
> > \usepackage{textcomp}
> > \usepackage{marvosym}
> > \usepackage{wasysym}
> > \usepackage{latexsym}
> > \usepackage{amssymb}
> > \usepackage{hyperref}
> > \tolerance=1000
> > \providecommand{\alert}[1]{\textbf{#1}}
> > \begin{document}
> >
> >
> >
> > \title{Test}
> > \author{Ben J. Ward}
> > \date{28 February 2011}
> > \maketitle
> >
> > \setcounter{tocdepth}{3}
> > \tableofcontents
> > \vspace*{1cm}
> >
> > \end{document}
> >
> > Thanks,
> > Ben W.
> > (Apologies if this has been sent twice, first time an error occured)
> >
> >
> > _______________________________________________
> > Emacs-orgmode mailing list
> > Please use `Reply All' to send replies to the list.
> > Emacs-orgmode@gnu.org
> > http://lists.gnu.org/mailman/listinfo/emacs-orgmode
> 

^ permalink raw reply	[flat|nested] 8+ messages in thread
* Re: Re: Org Babel and R issue with pdf latex export
  2011-02-28  7:07   ` Ben Ward
@ 2011-02-28 11:24     ` Rainer M Krug
  2011-02-28 17:47       ` Ben Ward
  0 siblings, 1 reply; 8+ messages in thread
From: Rainer M Krug @ 2011-02-28 11:24 UTC (permalink / raw)
  To: Ben Ward; +Cc: emacs-orgmode, Dan Davison

On Mon, Feb 28, 2011 at 8:07 AM, Ben Ward <benjamin.ward@bathspa.org> wrote:
> On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
>> Ben Ward <benjamin.ward@bathspa.org> writes:
>>
>> > Hi,
>> >
>> > I recently installed emacs, org-mode fresh on a new install of Arch
>> > Linux. Before I had it working on Ubuntu.
>> >
>> > I've installed everything as before and used the same .emacs file I had,
>> > but if I use org to write out some R script and export to pdf via latex,
>> > then I get an empty pdf document, with only the title and Contents
>> > heading. However if I export to anything else such as html it works, and
>> > shows me code and results.
>>
>> Hi Ben,
>>
>> Are you sure this problem concerns babel/R? What happens when you export
>> an Org document to pdf without any babel stuff?
>>
>> Can you provide an example Org file that you are having trouble
>> exporting to pdf? The problem is probably in your local configuration,
>> so if no-one can jump to the solution then start from a minimal working
>> config and try to find the part of your .emacs which is causing the
>> problem.
>>
>> Dan
>>
> Hi, I've tried exporting an org file that has no code in it to PDF and
> it works without any trouble.
>
> The file I'm trying to export is:
> #+TITLE: Test
> #+AUTHOR: Ben J. Ward
> #+LATEX_CLASS: article
> #+BABEL: :session *R* :results output
> \pagebreak
>
> Test:
>
> #+begin_src R :exports both
> x<-c(1,2,3,4,5)
> y<-c(5,10,15,20)
> x
> y
> xy<-(x*y)
> xy
> #+end_src

When I use your example and export it to LaTeX,

I get this:

#########################################
% Created 2011-02-28 Mon 12:21
\documentclass[11pt]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{color}
\usepackage{listings}
\providecommand{\alert}[1]{\textbf{#1}}
\begin{document}



\title{Test}
\author{Ben J. Ward}
\date{28 February 2011}
\maketitle

\setcounter{tocdepth}{3}
\tableofcontents
\vspace*{1cm}
The file I'm trying to export is:
\pagebreak

Test:

\lstset{language=R}
\begin{lstlisting}
x<-c(1,2,3,4,5)
y<-c(5,10,15,20)
x
y
xy<-(x*y)
xy
\end{lstlisting}

\begin{verbatim}
 [1] 1 2 3 4 5
 [1]  5 10 15 20
 Warning message:
 In x * y : longer object length is not a multiple of shorter object length
 [1]  5 20 45 80 25
\end{verbatim}



\end{document}
#########################################
So it works for me - have you tried to export to LaTex? If that works,
it is a LaTeX / pdf issue.

Rainer

>
> I can include my .emacs although it's lengthy.
>
> I uninstalled all of my emacs stuff, and installed it from the vanilla
> downloads on their respective sites, and I'm still getting the same
> result. I'm considering removing all my tex stuff and installing the
> vanilla texlive too.
>
> Thanks,
> Ben W.
>
>>
>> > I've tried even installing a version of org
>> > mode from source, using the build system my distro has, so as it's made
>> > and installed to exactly the right place, but I still don't have any
>> > luck. The texlive version I'm using is from my distro's package manager.
>> > Using C-c C-c to evaluate on the fly works. I had an issue getting org
>> > and babel to work with R on Windows 7 as well, but it was because
>> > certain tex packages were missing and I recieved a message when I tried
>> > to export, but nothing comes up here.
>> >
>> > Would the recent change:
>> > Org-babel is now inside org, remove (require 'org-babel-init)
>> >   and alike from your .emacs.
>> >   Look at http://orgmode.org/Changes.html#ob-configuration-changes
>> >   for overview of the settings.
>> > Be causing the entire issue?
>> >
>> > The .tex file I get out is thus:
>> > % Created 2011-02-28 Mon 03:47
>> > \documentclass[11pt]{article}
>> > \usepackage[utf8]{inputenc}
>> > \usepackage[T1]{fontenc}
>> > \usepackage{fixltx2e}
>> > \usepackage{graphicx}
>> > \usepackage{longtable}
>> > \usepackage{float}
>> > \usepackage{wrapfig}
>> > \usepackage{soul}
>> > \usepackage{textcomp}
>> > \usepackage{marvosym}
>> > \usepackage{wasysym}
>> > \usepackage{latexsym}
>> > \usepackage{amssymb}
>> > \usepackage{hyperref}
>> > \tolerance=1000
>> > \providecommand{\alert}[1]{\textbf{#1}}
>> > \begin{document}
>> >
>> >
>> >
>> > \title{Test}
>> > \author{Ben J. Ward}
>> > \date{28 February 2011}
>> > \maketitle
>> >
>> > \setcounter{tocdepth}{3}
>> > \tableofcontents
>> > \vspace*{1cm}
>> >
>> > \end{document}
>> >
>> > Thanks,
>> > Ben W.
>> > (Apologies if this has been sent twice, first time an error occured)
>> >
>> >
>> > _______________________________________________
>> > Emacs-orgmode mailing list
>> > Please use `Reply All' to send replies to the list.
>> > Emacs-orgmode@gnu.org
>> > http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>
>
>
>
> _______________________________________________
> Emacs-orgmode mailing list
> Please use `Reply All' to send replies to the list.
> Emacs-orgmode@gnu.org
> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>



-- 
NEW GERMAN FAX NUMBER!!!

Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch University
Main Campus, Merriman Avenue
Stellenbosch
South Africa

Cell:           +27 - (0)83 9479 042
Fax:            +27 - (0)86 516 2782
Fax:            +49 - (0)321 2125 2244
email:          Rainer@krugs.de

Skype:          RMkrug
Google:         R.M.Krug@gmail.com

^ permalink raw reply	[flat|nested] 8+ messages in thread
* Re: Re: Org Babel and R issue with pdf latex export
  2011-02-28 11:24     ` Rainer M Krug
@ 2011-02-28 17:47       ` Ben Ward
  2011-02-28 17:56         ` Erik Iverson
  0 siblings, 1 reply; 8+ messages in thread
From: Ben Ward @ 2011-02-28 17:47 UTC (permalink / raw)
  To: Rainer M Krug; +Cc: emacs-orgmode, Dan Davison

On 28/02/2011 11:24, Rainer M Krug wrote:
> On Mon, Feb 28, 2011 at 8:07 AM, Ben Ward<benjamin.ward@bathspa.org>  wrote:
>> On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
>>> Ben Ward<benjamin.ward@bathspa.org>  writes:
>>>
>>>> Hi,
>>>>
>>>> I recently installed emacs, org-mode fresh on a new install of Arch
>>>> Linux. Before I had it working on Ubuntu.
>>>>
>>>> I've installed everything as before and used the same .emacs file I had,
>>>> but if I use org to write out some R script and export to pdf via latex,
>>>> then I get an empty pdf document, with only the title and Contents
>>>> heading. However if I export to anything else such as html it works, and
>>>> shows me code and results.
>>> Hi Ben,
>>>
>>> Are you sure this problem concerns babel/R? What happens when you export
>>> an Org document to pdf without any babel stuff?
>>>
>>> Can you provide an example Org file that you are having trouble
>>> exporting to pdf? The problem is probably in your local configuration,
>>> so if no-one can jump to the solution then start from a minimal working
>>> config and try to find the part of your .emacs which is causing the
>>> problem.
>>>
>>> Dan
>>>
>> Hi, I've tried exporting an org file that has no code in it to PDF and
>> it works without any trouble.
>>
>> The file I'm trying to export is:
>> #+TITLE: Test
>> #+AUTHOR: Ben J. Ward
>> #+LATEX_CLASS: article
>> #+BABEL: :session *R* :results output
>> \pagebreak
>>
>> Test:
>>
>> #+begin_src R :exports both
>> x<-c(1,2,3,4,5)
>> y<-c(5,10,15,20)
>> x
>> y
>> xy<-(x*y)
>> xy
>> #+end_src
> When I use your example and export it to LaTeX,
>
> I get this:
>
> #########################################
> % Created 2011-02-28 Mon 12:21
> \documentclass[11pt]{article}
> \usepackage[utf8]{inputenc}
> \usepackage[T1]{fontenc}
> \usepackage{fixltx2e}
> \usepackage{graphicx}
> \usepackage{longtable}
> \usepackage{float}
> \usepackage{wrapfig}
> \usepackage{soul}
> \usepackage{textcomp}
> \usepackage{marvosym}
> \usepackage{wasysym}
> \usepackage{latexsym}
> \usepackage{amssymb}
> \usepackage{hyperref}
> \tolerance=1000
> \usepackage{color}
> \usepackage{listings}
> \providecommand{\alert}[1]{\textbf{#1}}
> \begin{document}
>
>
>
> \title{Test}
> \author{Ben J. Ward}
> \date{28 February 2011}
> \maketitle
>
> \setcounter{tocdepth}{3}
> \tableofcontents
> \vspace*{1cm}
> The file I'm trying to export is:
> \pagebreak
>
> Test:
>
> \lstset{language=R}
> \begin{lstlisting}
> x<-c(1,2,3,4,5)
> y<-c(5,10,15,20)
> x
> y
> xy<-(x*y)
> xy
> \end{lstlisting}
>
> \begin{verbatim}
>   [1] 1 2 3 4 5
>   [1]  5 10 15 20
>   Warning message:
>   In x * y : longer object length is not a multiple of shorter object length
>   [1]  5 20 45 80 25
> \end{verbatim}
>
>
>
> \end{document}
> #########################################
> So it works for me - have you tried to export to LaTex? If that works,
> it is a LaTeX / pdf issue.
>
> Rainer
>
Hi, I've just tried and I still get the same as before, but it works to 
latex, when there is no src code chunks.
This is my .emacs:

(require 'ess-site)
(require 'org-install)
(add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode))
(global-set-key "\C-cl" 'org-store-link)
(global-set-key "\C-cc" 'org-capture)
(global-set-key "\C-ca" 'org-agenda)
(global-set-key "\C-cb" 'org-iswitchb)
(transient-mark-mode 1)
(org-babel-do-load-languages
  'org-babel-load-languages
  '((R . t)
    (emacs-lisp . t)
    ))

(custom-set-variables
   ;; custom-set-variables was added by Custom.
   ;; If you edit it by hand, you could mess it up, so be careful.
   ;; Your init file should contain only one such instance.
   ;; If there is more than one, they won't work right.
  '(org-confirm-babel-evaluate nil))
(custom-set-faces
   ;; custom-set-faces was added by Custom.
   ;; If you edit it by hand, you could mess it up, so be careful.
   ;; Your init file should contain only one such instance.
   ;; If there is more than one, they won't work right.
  )

Thanks,
Ben W.

>> I can include my .emacs although it's lengthy.
>>
>> I uninstalled all of my emacs stuff, and installed it from the vanilla
>> downloads on their respective sites, and I'm still getting the same
>> result. I'm considering removing all my tex stuff and installing the
>> vanilla texlive too.
>>
>> Thanks,
>> Ben W.
>>
>>>> I've tried even installing a version of org
>>>> mode from source, using the build system my distro has, so as it's made
>>>> and installed to exactly the right place, but I still don't have any
>>>> luck. The texlive version I'm using is from my distro's package manager.
>>>> Using C-c C-c to evaluate on the fly works. I had an issue getting org
>>>> and babel to work with R on Windows 7 as well, but it was because
>>>> certain tex packages were missing and I recieved a message when I tried
>>>> to export, but nothing comes up here.
>>>>
>>>> Would the recent change:
>>>> Org-babel is now inside org, remove (require 'org-babel-init)
>>>>    and alike from your .emacs.
>>>>    Look at http://orgmode.org/Changes.html#ob-configuration-changes
>>>>    for overview of the settings.
>>>> Be causing the entire issue?
>>>>
>>>> The .tex file I get out is thus:
>>>> % Created 2011-02-28 Mon 03:47
>>>> \documentclass[11pt]{article}
>>>> \usepackage[utf8]{inputenc}
>>>> \usepackage[T1]{fontenc}
>>>> \usepackage{fixltx2e}
>>>> \usepackage{graphicx}
>>>> \usepackage{longtable}
>>>> \usepackage{float}
>>>> \usepackage{wrapfig}
>>>> \usepackage{soul}
>>>> \usepackage{textcomp}
>>>> \usepackage{marvosym}
>>>> \usepackage{wasysym}
>>>> \usepackage{latexsym}
>>>> \usepackage{amssymb}
>>>> \usepackage{hyperref}
>>>> \tolerance=1000
>>>> \providecommand{\alert}[1]{\textbf{#1}}
>>>> \begin{document}
>>>>
>>>>
>>>>
>>>> \title{Test}
>>>> \author{Ben J. Ward}
>>>> \date{28 February 2011}
>>>> \maketitle
>>>>
>>>> \setcounter{tocdepth}{3}
>>>> \tableofcontents
>>>> \vspace*{1cm}
>>>>
>>>> \end{document}
>>>>
>>>> Thanks,
>>>> Ben W.
>>>> (Apologies if this has been sent twice, first time an error occured)
>>>>
>>>>
>>>> _______________________________________________
>>>> Emacs-orgmode mailing list
>>>> Please use `Reply All' to send replies to the list.
>>>> Emacs-orgmode@gnu.org
>>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>
>>
>> _______________________________________________
>> Emacs-orgmode mailing list
>> Please use `Reply All' to send replies to the list.
>> Emacs-orgmode@gnu.org
>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>
>
>

^ permalink raw reply	[flat|nested] 8+ messages in thread
* Re: Re: Re: Org Babel and R issue with pdf latex export
  2011-02-28 17:47       ` Ben Ward
@ 2011-02-28 17:56         ` Erik Iverson
  2011-02-28 19:31           ` Erik Iverson
  2011-02-28 22:21           ` Ben Ward
  0 siblings, 2 replies; 8+ messages in thread
From: Erik Iverson @ 2011-02-28 17:56 UTC (permalink / raw)
  To: Ben Ward; +Cc: emacs-orgmode, Dan Davison, Rainer M Krug

Ben,

And what about your .Rprofile. Since your R code does produce
a warning, I wonder if you have instructed R to take some
special action when it sees one?

--Erik

Ben Ward wrote:
> On 28/02/2011 11:24, Rainer M Krug wrote:
>> On Mon, Feb 28, 2011 at 8:07 AM, Ben Ward<benjamin.ward@bathspa.org>  
>> wrote:
>>> On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
>>>> Ben Ward<benjamin.ward@bathspa.org>  writes:
>>>>
>>>>> Hi,
>>>>>
>>>>> I recently installed emacs, org-mode fresh on a new install of Arch
>>>>> Linux. Before I had it working on Ubuntu.
>>>>>
>>>>> I've installed everything as before and used the same .emacs file I 
>>>>> had,
>>>>> but if I use org to write out some R script and export to pdf via 
>>>>> latex,
>>>>> then I get an empty pdf document, with only the title and Contents
>>>>> heading. However if I export to anything else such as html it 
>>>>> works, and
>>>>> shows me code and results.
>>>> Hi Ben,
>>>>
>>>> Are you sure this problem concerns babel/R? What happens when you 
>>>> export
>>>> an Org document to pdf without any babel stuff?
>>>>
>>>> Can you provide an example Org file that you are having trouble
>>>> exporting to pdf? The problem is probably in your local configuration,
>>>> so if no-one can jump to the solution then start from a minimal working
>>>> config and try to find the part of your .emacs which is causing the
>>>> problem.
>>>>
>>>> Dan
>>>>
>>> Hi, I've tried exporting an org file that has no code in it to PDF and
>>> it works without any trouble.
>>>
>>> The file I'm trying to export is:
>>> #+TITLE: Test
>>> #+AUTHOR: Ben J. Ward
>>> #+LATEX_CLASS: article
>>> #+BABEL: :session *R* :results output
>>> \pagebreak
>>>
>>> Test:
>>>
>>> #+begin_src R :exports both
>>> x<-c(1,2,3,4,5)
>>> y<-c(5,10,15,20)
>>> x
>>> y
>>> xy<-(x*y)
>>> xy
>>> #+end_src
>> When I use your example and export it to LaTeX,
>>
>> I get this:
>>
>> #########################################
>> % Created 2011-02-28 Mon 12:21
>> \documentclass[11pt]{article}
>> \usepackage[utf8]{inputenc}
>> \usepackage[T1]{fontenc}
>> \usepackage{fixltx2e}
>> \usepackage{graphicx}
>> \usepackage{longtable}
>> \usepackage{float}
>> \usepackage{wrapfig}
>> \usepackage{soul}
>> \usepackage{textcomp}
>> \usepackage{marvosym}
>> \usepackage{wasysym}
>> \usepackage{latexsym}
>> \usepackage{amssymb}
>> \usepackage{hyperref}
>> \tolerance=1000
>> \usepackage{color}
>> \usepackage{listings}
>> \providecommand{\alert}[1]{\textbf{#1}}
>> \begin{document}
>>
>>
>>
>> \title{Test}
>> \author{Ben J. Ward}
>> \date{28 February 2011}
>> \maketitle
>>
>> \setcounter{tocdepth}{3}
>> \tableofcontents
>> \vspace*{1cm}
>> The file I'm trying to export is:
>> \pagebreak
>>
>> Test:
>>
>> \lstset{language=R}
>> \begin{lstlisting}
>> x<-c(1,2,3,4,5)
>> y<-c(5,10,15,20)
>> x
>> y
>> xy<-(x*y)
>> xy
>> \end{lstlisting}
>>
>> \begin{verbatim}
>>   [1] 1 2 3 4 5
>>   [1]  5 10 15 20
>>   Warning message:
>>   In x * y : longer object length is not a multiple of shorter object 
>> length
>>   [1]  5 20 45 80 25
>> \end{verbatim}
>>
>>
>>
>> \end{document}
>> #########################################
>> So it works for me - have you tried to export to LaTex? If that works,
>> it is a LaTeX / pdf issue.
>>
>> Rainer
>>
> Hi, I've just tried and I still get the same as before, but it works to 
> latex, when there is no src code chunks.
> This is my .emacs:
> 
> (require 'ess-site)
> (require 'org-install)
> (add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode))
> (global-set-key "\C-cl" 'org-store-link)
> (global-set-key "\C-cc" 'org-capture)
> (global-set-key "\C-ca" 'org-agenda)
> (global-set-key "\C-cb" 'org-iswitchb)
> (transient-mark-mode 1)
> (org-babel-do-load-languages
>  'org-babel-load-languages
>  '((R . t)
>    (emacs-lisp . t)
>    ))
> 
> (custom-set-variables
>   ;; custom-set-variables was added by Custom.
>   ;; If you edit it by hand, you could mess it up, so be careful.
>   ;; Your init file should contain only one such instance.
>   ;; If there is more than one, they won't work right.
>  '(org-confirm-babel-evaluate nil))
> (custom-set-faces
>   ;; custom-set-faces was added by Custom.
>   ;; If you edit it by hand, you could mess it up, so be careful.
>   ;; Your init file should contain only one such instance.
>   ;; If there is more than one, they won't work right.
>  )
> 
> Thanks,
> Ben W.
> 
>>> I can include my .emacs although it's lengthy.
>>>
>>> I uninstalled all of my emacs stuff, and installed it from the vanilla
>>> downloads on their respective sites, and I'm still getting the same
>>> result. I'm considering removing all my tex stuff and installing the
>>> vanilla texlive too.
>>>
>>> Thanks,
>>> Ben W.
>>>
>>>>> I've tried even installing a version of org
>>>>> mode from source, using the build system my distro has, so as it's 
>>>>> made
>>>>> and installed to exactly the right place, but I still don't have any
>>>>> luck. The texlive version I'm using is from my distro's package 
>>>>> manager.
>>>>> Using C-c C-c to evaluate on the fly works. I had an issue getting org
>>>>> and babel to work with R on Windows 7 as well, but it was because
>>>>> certain tex packages were missing and I recieved a message when I 
>>>>> tried
>>>>> to export, but nothing comes up here.
>>>>>
>>>>> Would the recent change:
>>>>> Org-babel is now inside org, remove (require 'org-babel-init)
>>>>>    and alike from your .emacs.
>>>>>    Look at http://orgmode.org/Changes.html#ob-configuration-changes
>>>>>    for overview of the settings.
>>>>> Be causing the entire issue?
>>>>>
>>>>> The .tex file I get out is thus:
>>>>> % Created 2011-02-28 Mon 03:47
>>>>> \documentclass[11pt]{article}
>>>>> \usepackage[utf8]{inputenc}
>>>>> \usepackage[T1]{fontenc}
>>>>> \usepackage{fixltx2e}
>>>>> \usepackage{graphicx}
>>>>> \usepackage{longtable}
>>>>> \usepackage{float}
>>>>> \usepackage{wrapfig}
>>>>> \usepackage{soul}
>>>>> \usepackage{textcomp}
>>>>> \usepackage{marvosym}
>>>>> \usepackage{wasysym}
>>>>> \usepackage{latexsym}
>>>>> \usepackage{amssymb}
>>>>> \usepackage{hyperref}
>>>>> \tolerance=1000
>>>>> \providecommand{\alert}[1]{\textbf{#1}}
>>>>> \begin{document}
>>>>>
>>>>>
>>>>>
>>>>> \title{Test}
>>>>> \author{Ben J. Ward}
>>>>> \date{28 February 2011}
>>>>> \maketitle
>>>>>
>>>>> \setcounter{tocdepth}{3}
>>>>> \tableofcontents
>>>>> \vspace*{1cm}
>>>>>
>>>>> \end{document}
>>>>>
>>>>> Thanks,
>>>>> Ben W.
>>>>> (Apologies if this has been sent twice, first time an error occured)
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Emacs-orgmode mailing list
>>>>> Please use `Reply All' to send replies to the list.
>>>>> Emacs-orgmode@gnu.org
>>>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>>
>>>
>>> _______________________________________________
>>> Emacs-orgmode mailing list
>>> Please use `Reply All' to send replies to the list.
>>> Emacs-orgmode@gnu.org
>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>>
>>
>>
> 
> 
> _______________________________________________
> Emacs-orgmode mailing list
> Please use `Reply All' to send replies to the list.
> Emacs-orgmode@gnu.org
> http://lists.gnu.org/mailman/listinfo/emacs-orgmode

^ permalink raw reply	[flat|nested] 8+ messages in thread
* Re: Re: Re: Org Babel and R issue with pdf latex export
  2011-02-28 17:56         ` Erik Iverson
@ 2011-02-28 19:31           ` Erik Iverson
  2011-02-28 22:21           ` Ben Ward
  1 sibling, 0 replies; 8+ messages in thread
From: Erik Iverson @ 2011-02-28 19:31 UTC (permalink / raw)
  To: Ben Ward; +Cc: emacs-orgmode, Dan Davison, Rainer M Krug



Erik Iverson wrote:
> Ben,
> 
> And what about your .Rprofile. Since your R code does produce
> a warning, I wonder if you have instructed R to take some
> special action when it sees one?

Related, how does the export process that's not working affect
the *R* buffer in Emacs?  Can you paste that buffer (or at least
the relevant portions?)

Thanks!

> 
> --Erik
> 
> Ben Ward wrote:
>> On 28/02/2011 11:24, Rainer M Krug wrote:
>>> On Mon, Feb 28, 2011 at 8:07 AM, Ben Ward<benjamin.ward@bathspa.org>  
>>> wrote:
>>>> On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
>>>>> Ben Ward<benjamin.ward@bathspa.org>  writes:
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> I recently installed emacs, org-mode fresh on a new install of Arch
>>>>>> Linux. Before I had it working on Ubuntu.
>>>>>>
>>>>>> I've installed everything as before and used the same .emacs file 
>>>>>> I had,
>>>>>> but if I use org to write out some R script and export to pdf via 
>>>>>> latex,
>>>>>> then I get an empty pdf document, with only the title and Contents
>>>>>> heading. However if I export to anything else such as html it 
>>>>>> works, and
>>>>>> shows me code and results.
>>>>> Hi Ben,
>>>>>
>>>>> Are you sure this problem concerns babel/R? What happens when you 
>>>>> export
>>>>> an Org document to pdf without any babel stuff?
>>>>>
>>>>> Can you provide an example Org file that you are having trouble
>>>>> exporting to pdf? The problem is probably in your local configuration,
>>>>> so if no-one can jump to the solution then start from a minimal 
>>>>> working
>>>>> config and try to find the part of your .emacs which is causing the
>>>>> problem.
>>>>>
>>>>> Dan
>>>>>
>>>> Hi, I've tried exporting an org file that has no code in it to PDF and
>>>> it works without any trouble.
>>>>
>>>> The file I'm trying to export is:
>>>> #+TITLE: Test
>>>> #+AUTHOR: Ben J. Ward
>>>> #+LATEX_CLASS: article
>>>> #+BABEL: :session *R* :results output
>>>> \pagebreak
>>>>
>>>> Test:
>>>>
>>>> #+begin_src R :exports both
>>>> x<-c(1,2,3,4,5)
>>>> y<-c(5,10,15,20)
>>>> x
>>>> y
>>>> xy<-(x*y)
>>>> xy
>>>> #+end_src
>>> When I use your example and export it to LaTeX,
>>>
>>> I get this:
>>>
>>> #########################################
>>> % Created 2011-02-28 Mon 12:21
>>> \documentclass[11pt]{article}
>>> \usepackage[utf8]{inputenc}
>>> \usepackage[T1]{fontenc}
>>> \usepackage{fixltx2e}
>>> \usepackage{graphicx}
>>> \usepackage{longtable}
>>> \usepackage{float}
>>> \usepackage{wrapfig}
>>> \usepackage{soul}
>>> \usepackage{textcomp}
>>> \usepackage{marvosym}
>>> \usepackage{wasysym}
>>> \usepackage{latexsym}
>>> \usepackage{amssymb}
>>> \usepackage{hyperref}
>>> \tolerance=1000
>>> \usepackage{color}
>>> \usepackage{listings}
>>> \providecommand{\alert}[1]{\textbf{#1}}
>>> \begin{document}
>>>
>>>
>>>
>>> \title{Test}
>>> \author{Ben J. Ward}
>>> \date{28 February 2011}
>>> \maketitle
>>>
>>> \setcounter{tocdepth}{3}
>>> \tableofcontents
>>> \vspace*{1cm}
>>> The file I'm trying to export is:
>>> \pagebreak
>>>
>>> Test:
>>>
>>> \lstset{language=R}
>>> \begin{lstlisting}
>>> x<-c(1,2,3,4,5)
>>> y<-c(5,10,15,20)
>>> x
>>> y
>>> xy<-(x*y)
>>> xy
>>> \end{lstlisting}
>>>
>>> \begin{verbatim}
>>>   [1] 1 2 3 4 5
>>>   [1]  5 10 15 20
>>>   Warning message:
>>>   In x * y : longer object length is not a multiple of shorter object 
>>> length
>>>   [1]  5 20 45 80 25
>>> \end{verbatim}
>>>
>>>
>>>
>>> \end{document}
>>> #########################################
>>> So it works for me - have you tried to export to LaTex? If that works,
>>> it is a LaTeX / pdf issue.
>>>
>>> Rainer
>>>
>> Hi, I've just tried and I still get the same as before, but it works 
>> to latex, when there is no src code chunks.
>> This is my .emacs:
>>
>> (require 'ess-site)
>> (require 'org-install)
>> (add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode))
>> (global-set-key "\C-cl" 'org-store-link)
>> (global-set-key "\C-cc" 'org-capture)
>> (global-set-key "\C-ca" 'org-agenda)
>> (global-set-key "\C-cb" 'org-iswitchb)
>> (transient-mark-mode 1)
>> (org-babel-do-load-languages
>>  'org-babel-load-languages
>>  '((R . t)
>>    (emacs-lisp . t)
>>    ))
>>
>> (custom-set-variables
>>   ;; custom-set-variables was added by Custom.
>>   ;; If you edit it by hand, you could mess it up, so be careful.
>>   ;; Your init file should contain only one such instance.
>>   ;; If there is more than one, they won't work right.
>>  '(org-confirm-babel-evaluate nil))
>> (custom-set-faces
>>   ;; custom-set-faces was added by Custom.
>>   ;; If you edit it by hand, you could mess it up, so be careful.
>>   ;; Your init file should contain only one such instance.
>>   ;; If there is more than one, they won't work right.
>>  )
>>
>> Thanks,
>> Ben W.
>>
>>>> I can include my .emacs although it's lengthy.
>>>>
>>>> I uninstalled all of my emacs stuff, and installed it from the vanilla
>>>> downloads on their respective sites, and I'm still getting the same
>>>> result. I'm considering removing all my tex stuff and installing the
>>>> vanilla texlive too.
>>>>
>>>> Thanks,
>>>> Ben W.
>>>>
>>>>>> I've tried even installing a version of org
>>>>>> mode from source, using the build system my distro has, so as it's 
>>>>>> made
>>>>>> and installed to exactly the right place, but I still don't have any
>>>>>> luck. The texlive version I'm using is from my distro's package 
>>>>>> manager.
>>>>>> Using C-c C-c to evaluate on the fly works. I had an issue getting 
>>>>>> org
>>>>>> and babel to work with R on Windows 7 as well, but it was because
>>>>>> certain tex packages were missing and I recieved a message when I 
>>>>>> tried
>>>>>> to export, but nothing comes up here.
>>>>>>
>>>>>> Would the recent change:
>>>>>> Org-babel is now inside org, remove (require 'org-babel-init)
>>>>>>    and alike from your .emacs.
>>>>>>    Look at http://orgmode.org/Changes.html#ob-configuration-changes
>>>>>>    for overview of the settings.
>>>>>> Be causing the entire issue?
>>>>>>
>>>>>> The .tex file I get out is thus:
>>>>>> % Created 2011-02-28 Mon 03:47
>>>>>> \documentclass[11pt]{article}
>>>>>> \usepackage[utf8]{inputenc}
>>>>>> \usepackage[T1]{fontenc}
>>>>>> \usepackage{fixltx2e}
>>>>>> \usepackage{graphicx}
>>>>>> \usepackage{longtable}
>>>>>> \usepackage{float}
>>>>>> \usepackage{wrapfig}
>>>>>> \usepackage{soul}
>>>>>> \usepackage{textcomp}
>>>>>> \usepackage{marvosym}
>>>>>> \usepackage{wasysym}
>>>>>> \usepackage{latexsym}
>>>>>> \usepackage{amssymb}
>>>>>> \usepackage{hyperref}
>>>>>> \tolerance=1000
>>>>>> \providecommand{\alert}[1]{\textbf{#1}}
>>>>>> \begin{document}
>>>>>>
>>>>>>
>>>>>>
>>>>>> \title{Test}
>>>>>> \author{Ben J. Ward}
>>>>>> \date{28 February 2011}
>>>>>> \maketitle
>>>>>>
>>>>>> \setcounter{tocdepth}{3}
>>>>>> \tableofcontents
>>>>>> \vspace*{1cm}
>>>>>>
>>>>>> \end{document}
>>>>>>
>>>>>> Thanks,
>>>>>> Ben W.
>>>>>> (Apologies if this has been sent twice, first time an error occured)
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> Emacs-orgmode mailing list
>>>>>> Please use `Reply All' to send replies to the list.
>>>>>> Emacs-orgmode@gnu.org
>>>>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>>>
>>>>
>>>> _______________________________________________
>>>> Emacs-orgmode mailing list
>>>> Please use `Reply All' to send replies to the list.
>>>> Emacs-orgmode@gnu.org
>>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>>>
>>>
>>>
>>
>>
>> _______________________________________________
>> Emacs-orgmode mailing list
>> Please use `Reply All' to send replies to the list.
>> Emacs-orgmode@gnu.org
>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
> 
> _______________________________________________
> Emacs-orgmode mailing list
> Please use `Reply All' to send replies to the list.
> Emacs-orgmode@gnu.org
> http://lists.gnu.org/mailman/listinfo/emacs-orgmode

^ permalink raw reply	[flat|nested] 8+ messages in thread
* Re: Re: Re: Org Babel and R issue with pdf latex export
  2011-02-28 17:56         ` Erik Iverson
  2011-02-28 19:31           ` Erik Iverson
@ 2011-02-28 22:21           ` Ben Ward
  1 sibling, 0 replies; 8+ messages in thread
From: Ben Ward @ 2011-02-28 22:21 UTC (permalink / raw)
  To: Erik Iverson; +Cc: emacs-orgmode, Dan Davison, Rainer M Krug

On Mon, 2011-02-28 at 11:56 -0600, Erik Iverson wrote:
> Ben,
> 
> And what about your .Rprofile. Since your R code does produce
> a warning, I wonder if you have instructed R to take some
> special action when it sees one?
> 

R on my system is as default with no special instruction by me. Tried
removing the source of error in the code block, still no luck. My *R*
Buffer contains:

> options(STERM='iESS', editor='emacsclient')
> x<-c(1,2,3,4,5)
y<-c(5,10,15,20)
x
y
'org_babel_R_eoe'
x<-c(1,2,3,4,5)
> y<-c(5,10,15,20)
> x
[1] 1 2 3 4 5
> y
[1]  5 10 15 20
> 'org_babel_R_eoe'
[1] "org_babel_R_eoe"
> 

Thanks,
Ben.

> --Erik
> 
> Ben Ward wrote:
> > On 28/02/2011 11:24, Rainer M Krug wrote:
> >> On Mon, Feb 28, 2011 at 8:07 AM, Ben Ward<benjamin.ward@bathspa.org>  
> >> wrote:
> >>> On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
> >>>> Ben Ward<benjamin.ward@bathspa.org>  writes:
> >>>>
> >>>>> Hi,
> >>>>>
> >>>>> I recently installed emacs, org-mode fresh on a new install of Arch
> >>>>> Linux. Before I had it working on Ubuntu.
> >>>>>
> >>>>> I've installed everything as before and used the same .emacs file I 
> >>>>> had,
> >>>>> but if I use org to write out some R script and export to pdf via 
> >>>>> latex,
> >>>>> then I get an empty pdf document, with only the title and Contents
> >>>>> heading. However if I export to anything else such as html it 
> >>>>> works, and
> >>>>> shows me code and results.
> >>>> Hi Ben,
> >>>>
> >>>> Are you sure this problem concerns babel/R? What happens when you 
> >>>> export
> >>>> an Org document to pdf without any babel stuff?
> >>>>
> >>>> Can you provide an example Org file that you are having trouble
> >>>> exporting to pdf? The problem is probably in your local configuration,
> >>>> so if no-one can jump to the solution then start from a minimal working
> >>>> config and try to find the part of your .emacs which is causing the
> >>>> problem.
> >>>>
> >>>> Dan
> >>>>
> >>> Hi, I've tried exporting an org file that has no code in it to PDF and
> >>> it works without any trouble.
> >>>
> >>> The file I'm trying to export is:
> >>> #+TITLE: Test
> >>> #+AUTHOR: Ben J. Ward
> >>> #+LATEX_CLASS: article
> >>> #+BABEL: :session *R* :results output
> >>> \pagebreak
> >>>
> >>> Test:
> >>>
> >>> #+begin_src R :exports both
> >>> x<-c(1,2,3,4,5)
> >>> y<-c(5,10,15,20)
> >>> x
> >>> y
> >>> xy<-(x*y)
> >>> xy
> >>> #+end_src
> >> When I use your example and export it to LaTeX,
> >>
> >> I get this:
> >>
> >> #########################################
> >> % Created 2011-02-28 Mon 12:21
> >> \documentclass[11pt]{article}
> >> \usepackage[utf8]{inputenc}
> >> \usepackage[T1]{fontenc}
> >> \usepackage{fixltx2e}
> >> \usepackage{graphicx}
> >> \usepackage{longtable}
> >> \usepackage{float}
> >> \usepackage{wrapfig}
> >> \usepackage{soul}
> >> \usepackage{textcomp}
> >> \usepackage{marvosym}
> >> \usepackage{wasysym}
> >> \usepackage{latexsym}
> >> \usepackage{amssymb}
> >> \usepackage{hyperref}
> >> \tolerance=1000
> >> \usepackage{color}
> >> \usepackage{listings}
> >> \providecommand{\alert}[1]{\textbf{#1}}
> >> \begin{document}
> >>
> >>
> >>
> >> \title{Test}
> >> \author{Ben J. Ward}
> >> \date{28 February 2011}
> >> \maketitle
> >>
> >> \setcounter{tocdepth}{3}
> >> \tableofcontents
> >> \vspace*{1cm}
> >> The file I'm trying to export is:
> >> \pagebreak
> >>
> >> Test:
> >>
> >> \lstset{language=R}
> >> \begin{lstlisting}
> >> x<-c(1,2,3,4,5)
> >> y<-c(5,10,15,20)
> >> x
> >> y
> >> xy<-(x*y)
> >> xy
> >> \end{lstlisting}
> >>
> >> \begin{verbatim}
> >>   [1] 1 2 3 4 5
> >>   [1]  5 10 15 20
> >>   Warning message:
> >>   In x * y : longer object length is not a multiple of shorter object 
> >> length
> >>   [1]  5 20 45 80 25
> >> \end{verbatim}
> >>
> >>
> >>
> >> \end{document}
> >> #########################################
> >> So it works for me - have you tried to export to LaTex? If that works,
> >> it is a LaTeX / pdf issue.
> >>
> >> Rainer
> >>
> > Hi, I've just tried and I still get the same as before, but it works to 
> > latex, when there is no src code chunks.
> > This is my .emacs:
> > 
> > (require 'ess-site)
> > (require 'org-install)
> > (add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode))
> > (global-set-key "\C-cl" 'org-store-link)
> > (global-set-key "\C-cc" 'org-capture)
> > (global-set-key "\C-ca" 'org-agenda)
> > (global-set-key "\C-cb" 'org-iswitchb)
> > (transient-mark-mode 1)
> > (org-babel-do-load-languages
> >  'org-babel-load-languages
> >  '((R . t)
> >    (emacs-lisp . t)
> >    ))
> > 
> > (custom-set-variables
> >   ;; custom-set-variables was added by Custom.
> >   ;; If you edit it by hand, you could mess it up, so be careful.
> >   ;; Your init file should contain only one such instance.
> >   ;; If there is more than one, they won't work right.
> >  '(org-confirm-babel-evaluate nil))
> > (custom-set-faces
> >   ;; custom-set-faces was added by Custom.
> >   ;; If you edit it by hand, you could mess it up, so be careful.
> >   ;; Your init file should contain only one such instance.
> >   ;; If there is more than one, they won't work right.
> >  )
> > 
> > Thanks,
> > Ben W.
> > 
> >>> I can include my .emacs although it's lengthy.
> >>>
> >>> I uninstalled all of my emacs stuff, and installed it from the vanilla
> >>> downloads on their respective sites, and I'm still getting the same
> >>> result. I'm considering removing all my tex stuff and installing the
> >>> vanilla texlive too.
> >>>
> >>> Thanks,
> >>> Ben W.
> >>>
> >>>>> I've tried even installing a version of org
> >>>>> mode from source, using the build system my distro has, so as it's 
> >>>>> made
> >>>>> and installed to exactly the right place, but I still don't have any
> >>>>> luck. The texlive version I'm using is from my distro's package 
> >>>>> manager.
> >>>>> Using C-c C-c to evaluate on the fly works. I had an issue getting org
> >>>>> and babel to work with R on Windows 7 as well, but it was because
> >>>>> certain tex packages were missing and I recieved a message when I 
> >>>>> tried
> >>>>> to export, but nothing comes up here.
> >>>>>
> >>>>> Would the recent change:
> >>>>> Org-babel is now inside org, remove (require 'org-babel-init)
> >>>>>    and alike from your .emacs.
> >>>>>    Look at http://orgmode.org/Changes.html#ob-configuration-changes
> >>>>>    for overview of the settings.
> >>>>> Be causing the entire issue?
> >>>>>
> >>>>> The .tex file I get out is thus:
> >>>>> % Created 2011-02-28 Mon 03:47
> >>>>> \documentclass[11pt]{article}
> >>>>> \usepackage[utf8]{inputenc}
> >>>>> \usepackage[T1]{fontenc}
> >>>>> \usepackage{fixltx2e}
> >>>>> \usepackage{graphicx}
> >>>>> \usepackage{longtable}
> >>>>> \usepackage{float}
> >>>>> \usepackage{wrapfig}
> >>>>> \usepackage{soul}
> >>>>> \usepackage{textcomp}
> >>>>> \usepackage{marvosym}
> >>>>> \usepackage{wasysym}
> >>>>> \usepackage{latexsym}
> >>>>> \usepackage{amssymb}
> >>>>> \usepackage{hyperref}
> >>>>> \tolerance=1000
> >>>>> \providecommand{\alert}[1]{\textbf{#1}}
> >>>>> \begin{document}
> >>>>>
> >>>>>
> >>>>>
> >>>>> \title{Test}
> >>>>> \author{Ben J. Ward}
> >>>>> \date{28 February 2011}
> >>>>> \maketitle
> >>>>>
> >>>>> \setcounter{tocdepth}{3}
> >>>>> \tableofcontents
> >>>>> \vspace*{1cm}
> >>>>>
> >>>>> \end{document}
> >>>>>
> >>>>> Thanks,
> >>>>> Ben W.
> >>>>> (Apologies if this has been sent twice, first time an error occured)
> >>>>>
> >>>>>
> >>>>> _______________________________________________
> >>>>> Emacs-orgmode mailing list
> >>>>> Please use `Reply All' to send replies to the list.
> >>>>> Emacs-orgmode@gnu.org
> >>>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
> >>>
> >>>
> >>> _______________________________________________
> >>> Emacs-orgmode mailing list
> >>> Please use `Reply All' to send replies to the list.
> >>> Emacs-orgmode@gnu.org
> >>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
> >>>
> >>
> >>
> > 
> > 
> > _______________________________________________
> > Emacs-orgmode mailing list
> > Please use `Reply All' to send replies to the list.
> > Emacs-orgmode@gnu.org
> > http://lists.gnu.org/mailman/listinfo/emacs-orgmode
> 

^ permalink raw reply	[flat|nested] 8+ messages in thread
end of thread, other threads:[~2011-02-28 22:19 UTC | newest]

Thread overview: 8+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2011-02-28  4:08 Org Babel and R issue with pdf latex export Ben Ward
2011-02-28  5:35 ` Dan Davison
2011-02-28  7:07   ` Ben Ward
2011-02-28 11:24     ` Rainer M Krug
2011-02-28 17:47       ` Ben Ward
2011-02-28 17:56         ` Erik Iverson
2011-02-28 19:31           ` Erik Iverson
2011-02-28 22:21           ` Ben Ward

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