From: Jambunathan K <kjambunathan@gmail.com>
To: Christophe Pouzat <christophe.pouzat@gmail.com>
Cc: Christophe Pouzat <christophe.pouzat@parisdescartes.fr>,
emacs-orgmode@gnu.org
Subject: Re: A manuscript on "reproducible research" introducing org-mode
Date: Thu, 16 Feb 2012 14:28:31 +0530 [thread overview]
Message-ID: <81aa4jupc8.fsf@gmail.com> (raw)
In-Reply-To: <87zkcjn84f.fsf@xtof-netbook.home> (Christophe Pouzat's message of "Wed, 15 Feb 2012 21:40:00 +0100")
Christophe
I see an ODT file in there - LFPdetection_in.odt
http://hal.archives-ouvertes.fr/hal-00591455/
May I ask how the document was produced.
Do you have any insights on how the Org's ODT exporter performs wrt your
input Org file. Just curious.
> @article{Delescluse2011,
> title = "Making neurophysiological data analysis reproducible: Why and how?",
> journal = "Journal of Physiology-Paris",
> volume = "",
> number = "0",
> pages = " - ",
> year = "2011",
> note = "",
> issn = "0928-4257",
> doi = "10.1016/j.jphysparis.2011.09.011",
> url = "http://www.sciencedirect.com/science/article/pii/S0928425711000374",
> author = "Matthieu Delescluse and Romain Franconville and Sébastien Joucla and Tiffany Lieury and Christophe Pouzat",
> keywords = "Software",
> keywords = "R",
> keywords = "Emacs",
> keywords = "Matlab",
> keywords = "Octave",
> keywords = "LATEX",
> keywords = "Org-mode",
> keywords = "Python",
> abstract = "Reproducible data analysis is an approach aiming at complementing classical printed scientific articles with everything required to independently reproduce the results they present. “Everything” covers here: the data, the computer codes and a precise description of how the code was applied to the data. A brief history of this approach is presented first, starting with what economists have been calling replication since the early eighties to end with what is now called reproducible research in computational data analysis oriented fields like statistics and signal processing. Since efficient tools are instrumental for a routine implementation of these approaches, a description of some of the available ones is presented next. A toy example demonstrates then the use of two open source software programs for reproducible data analysis: the “Sweave family” and the org-mode of emacs. The former is bound to R while the latter can be used with R, Matlab, Python and many more “generalist” data processing software. Both solutions can be used with Unix-like, Windows and Mac families of operating systems. It is argued that neuroscientists could communicate much more efficiently their results by adopting the reproducible research paradigm from their lab books all the way to their articles, thesis and books."
> }
--
next prev parent reply other threads:[~2012-02-16 8:59 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2011-09-05 13:55 A manuscript on "reproducible research" introducing org-mode Christophe Pouzat
2011-09-05 17:41 ` Thomas S. Dye
2011-09-08 10:06 ` Christophe Pouzat
2012-02-15 19:36 ` Thomas S. Dye
2012-02-15 20:40 ` Christophe Pouzat
2012-02-16 8:58 ` Jambunathan K [this message]
2012-02-16 9:21 ` Christophe Pouzat
2012-02-15 19:52 ` Samuel Wales
2012-02-16 20:24 ` Stephen Eglen
2012-02-16 20:59 ` Samuel Wales
2012-02-18 18:13 ` Thomas S. Dye
2012-02-19 1:59 ` Rasmus
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