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From: Christophe Pouzat <christophe.pouzat@gmail.com>
To: Jambunathan K <kjambunathan@gmail.com>
Cc: Christophe Pouzat <christophe.pouzat@parisdescartes.fr>,
	emacs-orgmode@gnu.org
Subject: Re: A manuscript on "reproducible research" introducing org-mode
Date: Thu, 16 Feb 2012 10:21:39 +0100	[thread overview]
Message-ID: <87pqdf16cc.fsf@xtof-netbook.home> (raw)
In-Reply-To: <81aa4jupc8.fsf@gmail.com> (Jambunathan K.'s message of "Thu, 16 Feb 2012 14:28:31 +0530")

Hello Jambunathan,

The ODT version was prepared "by hand" using LibreOffice. This was
written (last May) before your org-odt functions became part of org-mode
(if I'm right). I would now also do it with org-mode.

Christophe 

Jambunathan K <kjambunathan@gmail.com> writes:

> Christophe
>
> I see an ODT file in there - LFPdetection_in.odt
> http://hal.archives-ouvertes.fr/hal-00591455/
>
> May I ask how the document was produced. 
>
> Do you have any insights on how the Org's ODT exporter performs wrt your
> input Org file. Just curious.
>
>> @article{Delescluse2011,
>> title = "Making neurophysiological data analysis reproducible: Why and how?",
>> journal = "Journal of Physiology-Paris",
>> volume = "",
>> number = "0",
>> pages = " - ",
>> year = "2011",
>> note = "",
>> issn = "0928-4257",
>> doi = "10.1016/j.jphysparis.2011.09.011",
>> url = "http://www.sciencedirect.com/science/article/pii/S0928425711000374",
>> author = "Matthieu Delescluse and Romain Franconville and Sébastien Joucla and Tiffany Lieury and Christophe Pouzat",
>> keywords = "Software",
>> keywords = "R",
>> keywords = "Emacs",
>> keywords = "Matlab",
>> keywords = "Octave",
>> keywords = "LATEX",
>> keywords = "Org-mode",
>> keywords = "Python",
>> abstract = "Reproducible data analysis is an approach aiming at complementing classical printed scientific articles with everything required to independently reproduce the results they present. “Everything” covers here: the data, the computer codes and a precise description of how the code was applied to the data. A brief history of this approach is presented first, starting with what economists have been calling replication since the early eighties to end with what is now called reproducible research in computational data analysis oriented fields like statistics and signal processing. Since efficient tools are instrumental for a routine implementation of these approaches, a description of some of the available ones is presented next. A toy example demonstrates then the use of two open source software programs for reproducible data analysis: the “Sweave family” and the org-mode of emacs. The former is bound to R while the latter can be used with R, Matlab, Python and many more “generalist” data processing software. Both solutions can be used with Unix-like, Windows and Mac families of operating systems. It is argued that neuroscientists could communicate much more efficiently their results by adopting the reproducible research paradigm from their lab books all the way to their articles, thesis and books."
>> }

-- 

Most people are not natural-born statisticians. Left to our own
devices we are not very good at picking out patterns from a sea of
noisy data. To put it another way, we are all too good at picking out
non-existent patterns that happen to suit our purposes.
Bradley Efron & Robert Tibshirani (1993) An Introduction to the Bootstrap

--

Christophe Pouzat
MAP5 - Mathématiques Appliquées à Paris 5
CNRS UMR 8145
45, rue des Saints-Pères
75006 PARIS
France

tel: +33142863828
mobile: +33662941034
web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html

  reply	other threads:[~2012-02-16  9:21 UTC|newest]

Thread overview: 12+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2011-09-05 13:55 A manuscript on "reproducible research" introducing org-mode Christophe Pouzat
2011-09-05 17:41 ` Thomas S. Dye
2011-09-08 10:06   ` Christophe Pouzat
2012-02-15 19:36     ` Thomas S. Dye
2012-02-15 20:40       ` Christophe Pouzat
2012-02-16  8:58         ` Jambunathan K
2012-02-16  9:21           ` Christophe Pouzat [this message]
2012-02-15 19:52     ` Samuel Wales
2012-02-16 20:24       ` Stephen Eglen
2012-02-16 20:59         ` Samuel Wales
2012-02-18 18:13           ` Thomas S. Dye
2012-02-19  1:59             ` Rasmus

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