[babel] [bug?] create graph in R

[babel] [bug?] create graph in R

[Rainer M Krug]

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Hi

I am irritated - shouldn't the following create a pdf?

#+begin_src R :results file :file sustEconOnlyNonRec.pdf :session R
  plot(runif(100))
#+end_src

I am getting no error messages in the R console, nothing in the messages?

Org-mode version 7.8.09 (release_7.8.09.230.gec7b.dirty)

What does the dirty mean, by the way?

Cheers,

Rainer

- -- 
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys.
(Germany)

Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa

Tel :       +33 - (0)9 53 10 27 44
Cell:       +33 - (0)6 85 62 59 98
Fax :       +33 - (0)9 58 10 27 44

Fax (D):    +49 - (0)3 21 21 25 22 44

email:      Rainer@krugs.de

Skype:      RMkrug
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Re: [babel] [bug?] create graph in R

[Sebastien Vauban]

Hi Rainer,

Rainer M Krug wrote:
> I am irritated - shouldn't the following create a pdf?
>
> #+begin_src R :results file :file sustEconOnlyNonRec.pdf :session R
>   plot(runif(100))
> #+end_src
>
> I am getting no error messages in the R console, nothing in the messages?

I'm not using R -- yet! --, so I'm not sure about the following, but please
check whether you must write:

  #+begin_src R :results file :file sustEconOnlyNonRec.pdf

or

  #+begin_src R :results graphics :file sustEconOnlyNonRec.pdf

Best regards,
  Seb

-- 
Sebastien Vauban

Re: [babel] [bug?] create graph in R

[Nick Dokos]

Sebastien Vauban <wxhgmqzgwmuf@spammotel.com> wrote:

> Hi Rainer,
> 
> Rainer M Krug wrote:
> > I am irritated - shouldn't the following create a pdf?
> >
> > #+begin_src R :results file :file sustEconOnlyNonRec.pdf :session R
> >   plot(runif(100))
> > #+end_src
> >
> > I am getting no error messages in the R console, nothing in the messages?
> 
> I'm not using R -- yet! --, so I'm not sure about the following, but please
> check whether you must write:
> 
>   #+begin_src R :results file :file sustEconOnlyNonRec.pdf
> 
> or
> 
>   #+begin_src R :results graphics :file sustEconOnlyNonRec.pdf
> 

I've lost track of all these header arguments and their possible values: are
they documented somewhere (other than the mailing list)? AFAICT, they are not
in the manual.

Nick

Re: [babel] [bug?] create graph in R

[Nick Dokos]

Nick Dokos <nicholas.dokos@hp.com> wrote:

> Sebastien Vauban <wxhgmqzgwmuf@spammotel.com> wrote:
> 
> > Hi Rainer,
> > 
> > Rainer M Krug wrote:
> > > I am irritated - shouldn't the following create a pdf?
> > >
> > > #+begin_src R :results file :file sustEconOnlyNonRec.pdf :session R
> > >   plot(runif(100))
> > > #+end_src
> > >
> > > I am getting no error messages in the R console, nothing in the messages?
> > 
> > I'm not using R -- yet! --, so I'm not sure about the following, but please
> > check whether you must write:
> > 
> >   #+begin_src R :results file :file sustEconOnlyNonRec.pdf
> > 
> > or
> > 
> >   #+begin_src R :results graphics :file sustEconOnlyNonRec.pdf
> > 
> 
> I've lost track of all these header arguments and their possible values: are
> they documented somewhere (other than the mailing list)? AFAICT, they are not
> in the manual.
> 

To answer the question: on Worg

   http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-R.html

and other such language pages. Sorry for the noise.

Nick

Re: [babel] [bug?] create graph in R

[Michael Hannon]

On Tuesday, April 17, 2012 at 7:46 AM Sebastien Vauban wrote:

>Hi Rainer,
>
>Rainer M Krug wrote:
>> I am irritated - shouldn't the following create a pdf?
>>
>> #+begin_src R :results file :file sustEconOnlyNonRec.pdf :session R
>>   plot(runif(100))
>> #+end_src
>>
>> I am getting no error messages in the R console, nothing in the messages?
>
>I'm not using R -- yet! --, so I'm not sure about the following, but please
>check whether you must write:
>
>  #+begin_src R :results file :file sustEconOnlyNonRec.pdf
>
>or
>
>  #+begin_src R :results graphics :file sustEconOnlyNonRec.pdf
>

Hi, Seb.  Your suggestion produces what I take to be the desired output on my
system:

$ uname -a
Linux mikehppc.gh.lan 3.3.1-5.fc16.x86_64 #1 SMP Tue Apr 10 19:56:52 UTC 2012
x86_64 x86_64 x86_64 GNU/Linux

$ emacs --version
GNU Emacs 23.3.1
Copyright (C) 2011 Free Software Foundation, Inc.

Org-mode version 7.8.03 (release_7.8.03.324.gc4b233)

$ R --version
R version 2.15.0 (2012-03-30)

-- Mike