From: Rainer M Krug <Rainer@krugs.de>
To: Andreas Leha <andreas.leha@med.uni-goettingen.de>
Cc: emacs-orgmode@gnu.org
Subject: Re: [BUG] [babel] [R] :colnames yes conflicts with :results file
Date: Tue, 06 Jan 2015 14:49:48 +0100 [thread overview]
Message-ID: <m2oaqc3toj.fsf@krugs.de> (raw)
In-Reply-To: <olumw5wf5f9.fsf@med.uni-goettingen.de> (Andreas Leha's message of "Tue, 06 Jan 2015 12:40:42 +0000")
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Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
> Hi all,
Hi
>
> There seems to be a bug in babel (at least for R) when it comes to
> source blocks producing file links but taking tables with headers. In
> that case, ':colnames yes' disables the ':results file' directive.
I don't think this is a bug as it is not clear what should happen.
In the org manual it states concerning the :results file
,----
| * `file' The results will be interpreted as the path to a file, and
| will be inserted into the Org mode buffer as a file link. E.g.,
| `:results value file'.
`----
But the :colnames only works on tables (i.e. :results table) - but the
result is represented as a link to a file. So what should happen?
If you would like to have a table with links to files, the easiest is to
put the file names into [[]] in R and then return them in a table - or
use :results output and "draw" the table.
But as it stands, these two header arguments do not go together.
It would be nice to have a warning (or even error) in org, or at least a
table of header argument precedence.
By the way - never used the :results file - but now I will! Thanks.
Hope this helps,
Rainer
>
> Here is the Cm:
> * test
>
> #+BEGIN_SRC R :results file replace
> "some_file.csv"
> #+END_SRC
>
> #+RESULTS:
> [[file:some_file.csv]]
>
> #+BEGIN_SRC R :colnames yes :results file replace
> "some_file.csv"
> #+END_SRC
>
> #+RESULTS:
> | x |
> |---------------|
> | some_file.csv |
>
>
>
> * My Setup
> #+begin_src emacs-lisp
> (concat
> (replace-regexp-in-string " on .*" "" (emacs-version))
> "\n"
> (replace-regexp-in-string " @.*" ")" (org-version nil t))
> "\n"
> (replace-regexp-in-string "].*" "]" (ess-version)))
> #+end_src
>
> #+RESULTS:
> : GNU Emacs 24.4.50.1 (x86_64-apple-darwin13.3.0, NS appkit-1265.21 Version 10.9.4 (Build 13E28))
> : of 2014-09-02
> : Org-mode version 8.3beta (release_8.3beta-717-ga8096c)
> : ess-version: 14.05 [git: 4283f1304a54502c42707b6a4ba347703f0992dd]
>
> Regards,
> Andreas
>
>
>
--
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982
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next prev parent reply other threads:[~2015-01-06 13:50 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-01-06 12:40 [BUG] [babel] [R] :colnames yes conflicts with :results file Andreas Leha
2015-01-06 13:49 ` Rainer M Krug [this message]
2015-01-06 15:39 ` Andreas Leha
2015-01-06 17:50 ` Aaron Ecay
2015-01-07 9:11 ` Rainer M Krug
2015-01-06 16:01 ` Thomas S. Dye
2015-01-07 9:19 ` Rainer M Krug
2015-01-07 17:14 ` Thomas S. Dye
2015-01-07 9:33 ` Sebastien Vauban
2015-01-07 13:45 ` Rainer M Krug
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