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* error exporting with reference to table in another file
@ 2014-09-20 19:55 John Kitchin
  2014-09-24  3:32 ` Aaron Ecay
  0 siblings, 1 reply; 3+ messages in thread
From: John Kitchin @ 2014-09-20 19:55 UTC (permalink / raw)
  To: emacs-orgmode

Hi all,

I have this ina n org-file:


#+NAME: anatase-tio2-elisp
#+BEGIN_SRC emacs-lisp :var data=supporting-information.org:TiO2-data
(remove-if-not (lambda (x) (string= "anatase" (nth 1 x))) data)
#+END_SRC

#+RESULTS: anatase-tio2-elisp
| TiO$_2$ | anatase | LDA    | -2802.73 | 33.62 |  187.4 |
| TiO$_2$ | anatase | AM05   | -2741.12 | 34.33 | 178.26 |
| TiO$_2$ | anatase | PBEsol | -2763.61 | 34.25 | 178.71 |
| TiO$_2$ | anatase | PBE    | -2781.16 | 35.13 | 171.42 |

The code works fine, but when I try to export to a pdf or html I get errors
like:

org-babel-exp processing... [2 times]
org-babel-ref-resolve: Reference 'TiO2-data' not found in this buffer

Here is my org-version:

Org-mode version 8.2.7c (8.2.7c-25-g1faeb4-elpa @ /Users/jkitchin/Dropbox/kitchingroup/jmax/elpa/org-20140811/)

Any thoughts on what is causing this? Thanks,



-- 
-----------------------------------
John Kitchin
http://kitchingroup.cheme.cmu.edu

^ permalink raw reply	[flat|nested] 3+ messages in thread

• * Re: error exporting with reference to table in another file
    2014-09-20 19:55 error exporting with reference to table in another file John Kitchin
  @ 2014-09-24  3:32 ` Aaron Ecay
    2014-09-24 20:56   ` John Kitchin
    0 siblings, 1 reply; 3+ messages in thread
  From: Aaron Ecay @ 2014-09-24  3:32 UTC (permalink / raw)
    To: John Kitchin, emacs-orgmode
  
  [-- Attachment #1: Type: text/plain, Size: 1199 bytes --]
  
  Hi John,
  
  2014ko irailak 20an, John Kitchin-ek idatzi zuen:
  > 
  > Hi all,
  > 
  > I have this ina n org-file:
  > 
  > 
  > #+NAME: anatase-tio2-elisp
  > #+BEGIN_SRC emacs-lisp :var data=supporting-information.org:TiO2-data
  > (remove-if-not (lambda (x) (string= "anatase" (nth 1 x))) data)
  > #+END_SRC
  > 
  > #+RESULTS: anatase-tio2-elisp
  > | TiO$_2$ | anatase | LDA    | -2802.73 | 33.62 |  187.4 |
  > | TiO$_2$ | anatase | AM05   | -2741.12 | 34.33 | 178.26 |
  > | TiO$_2$ | anatase | PBEsol | -2763.61 | 34.25 | 178.71 |
  > | TiO$_2$ | anatase | PBE    | -2781.16 | 35.13 | 171.42 |
  > 
  > The code works fine, but when I try to export to a pdf or html I get errors
  > like:
  > 
  > org-babel-exp processing... [2 times]
  > org-babel-ref-resolve: Reference 'TiO2-data' not found in this buffer
  > 
  > Here is my org-version:
  > 
  > Org-mode version 8.2.7c (8.2.7c-25-g1faeb4-elpa @
  > /Users/jkitchin/Dropbox/kitchingroup/jmax/elpa/org-20140811/)
  
  FWIW I cannot reproduce this in emacs -Q, even with the same commit checked
  out.  I’m attaching to this message the test files I used, in case anyone
  else wants to try.  I did (setq org-confirm-babel-evaluate nil) before
  doing the export.
  
  [-- Warning: decoded text below may be mangled, UTF-8 assumed --]
  [-- Attachment #2: export-test1.org --]
  [-- Type: text/x-org, Size: 393 bytes --]
  
  #+NAME: anatase-tio2-elisp
  #+BEGIN_SRC emacs-lisp :var data=supporting-information.org:TiO2-data :exports both
  data
  #+END_SRC
  
  #+RESULTS: anatase-tio2-elisp
  | TiO$_2$ | anatase | LDA    | -2802.73 | 33.62 |  187.4 |
  | TiO$_2$ | anatase | AM05   | -2741.12 | 34.33 | 178.26 |
  | TiO$_2$ | anatase | PBEsol | -2763.61 | 34.25 | 178.71 |
  | TiO$_2$ | anatase | PBE    | -2781.16 | 35.13 | 171.42 |
  
  [-- Warning: decoded text below may be mangled, UTF-8 assumed --]
  [-- Attachment #3: supporting-information.org --]
  [-- Type: text/x-org, Size: 254 bytes --]
  
  #+name: TiO2-data
  | TiO$_2$ | anatase | LDA    | -2802.73 | 33.62 |  187.4 |
  | TiO$_2$ | anatase | AM05   | -2741.12 | 34.33 | 178.26 |
  | TiO$_2$ | anatase | PBEsol | -2763.61 | 34.25 | 178.71 |
  | TiO$_2$ | anatase | PBE    | -2781.16 | 35.13 | 171.42 |
  
  [-- Attachment #4: Type: text/plain, Size: 15 bytes --]
  
  -- 
  Aaron Ecay
  
  ^ permalink raw reply	[flat|nested] 3+ messages in thread

• • * Re: error exporting with reference to table in another file
      2014-09-24  3:32 ` Aaron Ecay
    @ 2014-09-24 20:56   ` John Kitchin
      0 siblings, 0 replies; 3+ messages in thread
    From: John Kitchin @ 2014-09-24 20:56 UTC (permalink / raw)
      To: emacs-orgmode
    
    Thanks for checking. It turns out to be a silly problem that is my
    fault. I extracted attachments out of two different PDF files into the
    same directory, and both PDF files had an attachment called
    supporting-information.org. So the first one is what had the TiO2-data
    table, and it got overwritten by the second file.
    
    So, of course, it was missing ;)
    
    Sorry for the noise.
    
    Aaron Ecay <aaronecay@gmail.com> writes:
    
    > Hi John,
    >
    > 2014ko irailak 20an, John Kitchin-ek idatzi zuen:
    >> 
    >> Hi all,
    >> 
    >> I have this ina n org-file:
    >> 
    >> 
    >> #+NAME: anatase-tio2-elisp
    >> #+BEGIN_SRC emacs-lisp :var data=supporting-information.org:TiO2-data
    >> (remove-if-not (lambda (x) (string= "anatase" (nth 1 x))) data)
    >> #+END_SRC
    >> 
    >> #+RESULTS: anatase-tio2-elisp
    >> | TiO$_2$ | anatase | LDA    | -2802.73 | 33.62 |  187.4 |
    >> | TiO$_2$ | anatase | AM05   | -2741.12 | 34.33 | 178.26 |
    >> | TiO$_2$ | anatase | PBEsol | -2763.61 | 34.25 | 178.71 |
    >> | TiO$_2$ | anatase | PBE    | -2781.16 | 35.13 | 171.42 |
    >> 
    >> The code works fine, but when I try to export to a pdf or html I get errors
    >> like:
    >> 
    >> org-babel-exp processing... [2 times]
    >> org-babel-ref-resolve: Reference 'TiO2-data' not found in this buffer
    >> 
    >> Here is my org-version:
    >> 
    >> Org-mode version 8.2.7c (8.2.7c-25-g1faeb4-elpa @
    >> /Users/jkitchin/Dropbox/kitchingroup/jmax/elpa/org-20140811/)
    >
    > FWIW I cannot reproduce this in emacs -Q, even with the same commit checked
    > out.  I’m attaching to this message the test files I used, in case anyone
    > else wants to try.  I did (setq org-confirm-babel-evaluate nil) before
    > doing the export.
    >
    > #+NAME: anatase-tio2-elisp
    > #+BEGIN_SRC emacs-lisp :var data=supporting-information.org:TiO2-data :exports both
    >
    > data
    > #+END_SRC
    >
    > #+RESULTS: anatase-tio2-elisp
    > | TiO$_2$ | anatase | LDA    | -2802.73 | 33.62 |  187.4 |
    >
    > | TiO$_2$ | anatase | AM05   | -2741.12 | 34.33 | 178.26 |
    > | TiO$_2$ | anatase | PBEsol | -2763.61 | 34.25 | 178.71 |
    > | TiO$_2$ | anatase | PBE    | -2781.16 | 35.13 | 171.42 |
    >
    > #+name: TiO2-data
    > | TiO$_2$ | anatase | LDA    | -2802.73 | 33.62 |  187.4 |
    >
    > | TiO$_2$ | anatase | AM05   | -2741.12 | 34.33 | 178.26 |
    > | TiO$_2$ | anatase | PBEsol | -2763.61 | 34.25 | 178.71 |
    > | TiO$_2$ | anatase | PBE    | -2781.16 | 35.13 | 171.42 |
    
    -- 
    -----------------------------------
    John Kitchin
    Professor
    Doherty Hall A207F
    Department of Chemical Engineering
    Carnegie Mellon University
    Pittsburgh, PA 15213
    412-268-7803
    http://kitchingroup.cheme.cmu.edu
    
    ^ permalink raw reply	[flat|nested] 3+ messages in thread

end of thread, other threads:[~2014-09-24 20:56 UTC | newest]

Thread overview: 3+ messages (download: mbox.gz / follow: Atom feed)
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2014-09-20 19:55 error exporting with reference to table in another file John Kitchin
2014-09-24  3:32 ` Aaron Ecay
2014-09-24 20:56   ` John Kitchin

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