emacs-orgmode@gnu.org archives
 help / color / mirror / code / Atom feed
* Warnings while installing org-ref
@ 2017-05-26 13:24 Lars Bjørndal
  2017-05-26 13:41 ` John Kitchin
  2017-05-26 20:06 ` John Kitchin
  0 siblings, 2 replies; 7+ messages in thread
From: Lars Bjørndal @ 2017-05-26 13:24 UTC (permalink / raw)
  To: emacs-orgmode@gnu.org

I installed org-ref from Elpa, and I got some warnings. Emacs version:

GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of 2017-05-02

I'm not sure how critical these error messages are.

Fri May 26 14:59:37 2017
Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'

In key-chord-input-method:
key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
accepts only
    1-2
i May 26 14:59:45 2017
Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'

In helm-position:
helm-lib.el:388:14:Warning: macro `helm-position' defined too late

In end of data:
helm-lib.el:1006:1:Warning: the following functions are not known to be
defined\
:
    helm-interpret-value, helm-get-current-source

Compiling file
/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
tion.el at Fri May 26 14:59:54 2017
Entering directory `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'

In end of data:
bibtex-completion.el:1210:1:Warning: the following functions are not
known to b\
e defined:
    reftex-what-macro, org-find-property,
        reftex-locate-bibliography-files

Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'

In end of data:
doi-utils.el:1361:1:Warning: the following functions are not known to be
define\
d:
    org-ref-find-bibliography, reftex-get-bib-field,
        org-ref-bib-citation

Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
 at Fri May 26 14:59:57 2017

In org-ref-bibtex-assoc-pdf-with-entry:
org-ref-bibtex.el:728:25:Warning: reference to free variable
    `org-ref-pdf-directory'

In orhc-bibtex-field-formatter:
org-ref-bibtex.el:1092:27:Warning: reference to free variable
    `org-ref-pdf-directory'
    org-ref-bibtex.el:1098:27:Warning: reference to free variable
        `org-ref-notes-directory'

In end of data:
org-ref-bibtex.el:1324:1:Warning: the following functions are not known
to be d\
efined:
    reftex-get-bib-field, org-ref-find-bibliography

Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
el at Fri May 26 14:59:57 2017

In end of data:
org-ref-citeproc.el:919:1:Warning: the function
    `org-ref-get-bibtex-key-and-file' is not known to be defined.

Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
t Fri May 26 14:59:57 2017

In org-ref-update-pre-post-text:
org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
interactive use
    only; use `delete-char' instead.
    org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
    interactive use
        only; use `delete-char' instead.

In end of data:
org-ref-core.el:3498:1:Warning: the following functions are not known to
be def\
ined:
    org-ref-match-next-cite-link, org-ref-match-next-label-link,
        org-ref-match-next-ref-link,
            org-ref-make-org-link-cite-key-visible,
            org-in-commented-heading-p

Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
ex.el at Fri May 26 14:59:58 2017

In org-ref-format-citation:
org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable `end'
org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
`path'
org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
argument,
    but requires 2-3
    org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
    `path'

In org-ref-helm-load-completions-async:
org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
    `bibtex-completion-cached-candidates'
    org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
        `bibtex-completion-bibliography-hash'

In org-ref-browser:
org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
function (as
    of 25.1); use `outline-show-all' instead.
    org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
        `count-key-pos'
        org-ref-helm-bibtex.el:715:68:Warning: reference to free
        variable
            `count-key-pos'

Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
t Fri May 26 14:59:58 2017

In org-ref:
org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
`matches';
    use `push' or `cl-pushnew'
    org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
    `matches';
        use `push' or `cl-pushnew'
        org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
        var `matches';
            use `push' or `cl-pushnew'
            org-ref-helm.el:380:47:Warning: reference to free variable
            `org-latex-prefer-user-labels'

Compiling file
/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
 Fri May 26 14:59:59 2017

In end of data:
org-ref-pdf.el:248:1:Warning: the following functions are not known to
be defin\
ed:
    pdf-view-assert-active-region, pdf-view-active-region-text,
        pdf-view-deactivate-region

Lars

^ permalink raw reply	[flat|nested] 7+ messages in thread

* Re: Warnings while installing org-ref
  2017-05-26 13:24 Warnings while installing org-ref Lars Bjørndal
@ 2017-05-26 13:41 ` John Kitchin
  2017-05-26 20:06 ` John Kitchin
  1 sibling, 0 replies; 7+ messages in thread
From: John Kitchin @ 2017-05-26 13:41 UTC (permalink / raw)
  To: Lars Bjørndal; +Cc: emacs-orgmode@gnu.org

I don't think any of those are critical.

Lars Bjørndal writes:

> I installed org-ref from Elpa, and I got some warnings. Emacs version:
>
> GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of 2017-05-02
>
> I'm not sure how critical these error messages are.
>
> Fri May 26 14:59:37 2017
> Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
>
> In key-chord-input-method:
> key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
> accepts only
>     1-2
> i May 26 14:59:45 2017
> Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
>
> In helm-position:
> helm-lib.el:388:14:Warning: macro `helm-position' defined too late
>
> In end of data:
> helm-lib.el:1006:1:Warning: the following functions are not known to be
> defined\
> :
>     helm-interpret-value, helm-get-current-source
>
> Compiling file
> /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> tion.el at Fri May 26 14:59:54 2017
> Entering directory `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
>
> In end of data:
> bibtex-completion.el:1210:1:Warning: the following functions are not
> known to b\
> e defined:
>     reftex-what-macro, org-find-property,
>         reftex-locate-bibliography-files
>
> Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
>
> In end of data:
> doi-utils.el:1361:1:Warning: the following functions are not known to be
> define\
> d:
>     org-ref-find-bibliography, reftex-get-bib-field,
>         org-ref-bib-citation
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
>  at Fri May 26 14:59:57 2017
>
> In org-ref-bibtex-assoc-pdf-with-entry:
> org-ref-bibtex.el:728:25:Warning: reference to free variable
>     `org-ref-pdf-directory'
>
> In orhc-bibtex-field-formatter:
> org-ref-bibtex.el:1092:27:Warning: reference to free variable
>     `org-ref-pdf-directory'
>     org-ref-bibtex.el:1098:27:Warning: reference to free variable
>         `org-ref-notes-directory'
>
> In end of data:
> org-ref-bibtex.el:1324:1:Warning: the following functions are not known
> to be d\
> efined:
>     reftex-get-bib-field, org-ref-find-bibliography
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> el at Fri May 26 14:59:57 2017
>
> In end of data:
> org-ref-citeproc.el:919:1:Warning: the function
>     `org-ref-get-bibtex-key-and-file' is not known to be defined.
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
> t Fri May 26 14:59:57 2017
>
> In org-ref-update-pre-post-text:
> org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> interactive use
>     only; use `delete-char' instead.
>     org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
>     interactive use
>         only; use `delete-char' instead.
>
> In end of data:
> org-ref-core.el:3498:1:Warning: the following functions are not known to
> be def\
> ined:
>     org-ref-match-next-cite-link, org-ref-match-next-label-link,
>         org-ref-match-next-ref-link,
>             org-ref-make-org-link-cite-key-visible,
>             org-in-commented-heading-p
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> ex.el at Fri May 26 14:59:58 2017
>
> In org-ref-format-citation:
> org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable `end'
> org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
> `path'
> org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
> org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
> argument,
>     but requires 2-3
>     org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
>     `path'
>
> In org-ref-helm-load-completions-async:
> org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
>     `bibtex-completion-cached-candidates'
>     org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
>         `bibtex-completion-bibliography-hash'
>
> In org-ref-browser:
> org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> function (as
>     of 25.1); use `outline-show-all' instead.
>     org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
>         `count-key-pos'
>         org-ref-helm-bibtex.el:715:68:Warning: reference to free
>         variable
>             `count-key-pos'
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
> t Fri May 26 14:59:58 2017
>
> In org-ref:
> org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
> `matches';
>     use `push' or `cl-pushnew'
>     org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
>     `matches';
>         use `push' or `cl-pushnew'
>         org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
>         var `matches';
>             use `push' or `cl-pushnew'
>             org-ref-helm.el:380:47:Warning: reference to free variable
>             `org-latex-prefer-user-labels'
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
>  Fri May 26 14:59:59 2017
>
> In end of data:
> org-ref-pdf.el:248:1:Warning: the following functions are not known to
> be defin\
> ed:
>     pdf-view-assert-active-region, pdf-view-active-region-text,
>         pdf-view-deactivate-region
>
> Lars


--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

^ permalink raw reply	[flat|nested] 7+ messages in thread

* Re: Warnings while installing org-ref
  2017-05-26 13:24 Warnings while installing org-ref Lars Bjørndal
  2017-05-26 13:41 ` John Kitchin
@ 2017-05-26 20:06 ` John Kitchin
  2017-05-27 20:51   ` Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref) Lars Bjørndal
  1 sibling, 1 reply; 7+ messages in thread
From: John Kitchin @ 2017-05-26 20:06 UTC (permalink / raw)
  To: Lars Bjørndal; +Cc: emacs-orgmode@gnu.org

I pushed a bunch of commits today to clean up a lot of these. There are
still a few that I don't know how to get rid of, but it should be a lot
cleaner now.

Lars Bjørndal writes:

> I installed org-ref from Elpa, and I got some warnings. Emacs version:
>
> GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of 2017-05-02
>
> I'm not sure how critical these error messages are.
>
> Fri May 26 14:59:37 2017
> Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
>
> In key-chord-input-method:
> key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
> accepts only
>     1-2
> i May 26 14:59:45 2017
> Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
>
> In helm-position:
> helm-lib.el:388:14:Warning: macro `helm-position' defined too late
>
> In end of data:
> helm-lib.el:1006:1:Warning: the following functions are not known to be
> defined\
> :
>     helm-interpret-value, helm-get-current-source
>
> Compiling file
> /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> tion.el at Fri May 26 14:59:54 2017
> Entering directory `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
>
> In end of data:
> bibtex-completion.el:1210:1:Warning: the following functions are not
> known to b\
> e defined:
>     reftex-what-macro, org-find-property,
>         reftex-locate-bibliography-files
>
> Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
>
> In end of data:
> doi-utils.el:1361:1:Warning: the following functions are not known to be
> define\
> d:
>     org-ref-find-bibliography, reftex-get-bib-field,
>         org-ref-bib-citation
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
>  at Fri May 26 14:59:57 2017
>
> In org-ref-bibtex-assoc-pdf-with-entry:
> org-ref-bibtex.el:728:25:Warning: reference to free variable
>     `org-ref-pdf-directory'
>
> In orhc-bibtex-field-formatter:
> org-ref-bibtex.el:1092:27:Warning: reference to free variable
>     `org-ref-pdf-directory'
>     org-ref-bibtex.el:1098:27:Warning: reference to free variable
>         `org-ref-notes-directory'
>
> In end of data:
> org-ref-bibtex.el:1324:1:Warning: the following functions are not known
> to be d\
> efined:
>     reftex-get-bib-field, org-ref-find-bibliography
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> el at Fri May 26 14:59:57 2017
>
> In end of data:
> org-ref-citeproc.el:919:1:Warning: the function
>     `org-ref-get-bibtex-key-and-file' is not known to be defined.
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
> t Fri May 26 14:59:57 2017
>
> In org-ref-update-pre-post-text:
> org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> interactive use
>     only; use `delete-char' instead.
>     org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
>     interactive use
>         only; use `delete-char' instead.
>
> In end of data:
> org-ref-core.el:3498:1:Warning: the following functions are not known to
> be def\
> ined:
>     org-ref-match-next-cite-link, org-ref-match-next-label-link,
>         org-ref-match-next-ref-link,
>             org-ref-make-org-link-cite-key-visible,
>             org-in-commented-heading-p
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> ex.el at Fri May 26 14:59:58 2017
>
> In org-ref-format-citation:
> org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable `end'
> org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
> `path'
> org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
> org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
> argument,
>     but requires 2-3
>     org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
>     `path'
>
> In org-ref-helm-load-completions-async:
> org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
>     `bibtex-completion-cached-candidates'
>     org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
>         `bibtex-completion-bibliography-hash'
>
> In org-ref-browser:
> org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> function (as
>     of 25.1); use `outline-show-all' instead.
>     org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
>         `count-key-pos'
>         org-ref-helm-bibtex.el:715:68:Warning: reference to free
>         variable
>             `count-key-pos'
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
> t Fri May 26 14:59:58 2017
>
> In org-ref:
> org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
> `matches';
>     use `push' or `cl-pushnew'
>     org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
>     `matches';
>         use `push' or `cl-pushnew'
>         org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
>         var `matches';
>             use `push' or `cl-pushnew'
>             org-ref-helm.el:380:47:Warning: reference to free variable
>             `org-latex-prefer-user-labels'
>
> Compiling file
> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
>  Fri May 26 14:59:59 2017
>
> In end of data:
> org-ref-pdf.el:248:1:Warning: the following functions are not known to
> be defin\
> ed:
>     pdf-view-assert-active-region, pdf-view-active-region-text,
>         pdf-view-deactivate-region
>
> Lars


--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

^ permalink raw reply	[flat|nested] 7+ messages in thread

* Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref)
  2017-05-26 20:06 ` John Kitchin
@ 2017-05-27 20:51   ` Lars Bjørndal
  2017-05-27 21:41     ` John Kitchin
  0 siblings, 1 reply; 7+ messages in thread
From: Lars Bjørndal @ 2017-05-27 20:51 UTC (permalink / raw)
  To: emacs-orgmode@gnu.org

On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
> I pushed a bunch of commits today to clean up a lot of these. There are
> still a few that I don't know how to get rid of, but it should be a lot
> cleaner now.

Thanks a lot.

To learn Org, Org-ref and exports, I tried to export the org-ref.org
to LaTeX. The .tex file is produced, but I get the following error
message:

  user-error: Unable to resolve link: "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"

What does that mean?

Thanks and regards, Lars

> Lars Bjørndal writes:
> 
> > I installed org-ref from Elpa, and I got some warnings. Emacs version:
> >
> > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of 2017-05-02
> >
> > I'm not sure how critical these error messages are.
> >
> > Fri May 26 14:59:37 2017
> > Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
> >
> > In key-chord-input-method:
> > key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
> > accepts only
> >     1-2
> > i May 26 14:59:45 2017
> > Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
> >
> > In helm-position:
> > helm-lib.el:388:14:Warning: macro `helm-position' defined too late
> >
> > In end of data:
> > helm-lib.el:1006:1:Warning: the following functions are not known to be
> > defined\
> > :
> >     helm-interpret-value, helm-get-current-source
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> > tion.el at Fri May 26 14:59:54 2017
> > Entering directory `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
> >
> > In end of data:
> > bibtex-completion.el:1210:1:Warning: the following functions are not
> > known to b\
> > e defined:
> >     reftex-what-macro, org-find-property,
> >         reftex-locate-bibliography-files
> >
> > Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
> >
> > In end of data:
> > doi-utils.el:1361:1:Warning: the following functions are not known to be
> > define\
> > d:
> >     org-ref-find-bibliography, reftex-get-bib-field,
> >         org-ref-bib-citation
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
> >  at Fri May 26 14:59:57 2017
> >
> > In org-ref-bibtex-assoc-pdf-with-entry:
> > org-ref-bibtex.el:728:25:Warning: reference to free variable
> >     `org-ref-pdf-directory'
> >
> > In orhc-bibtex-field-formatter:
> > org-ref-bibtex.el:1092:27:Warning: reference to free variable
> >     `org-ref-pdf-directory'
> >     org-ref-bibtex.el:1098:27:Warning: reference to free variable
> >         `org-ref-notes-directory'
> >
> > In end of data:
> > org-ref-bibtex.el:1324:1:Warning: the following functions are not known
> > to be d\
> > efined:
> >     reftex-get-bib-field, org-ref-find-bibliography
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> > el at Fri May 26 14:59:57 2017
> >
> > In end of data:
> > org-ref-citeproc.el:919:1:Warning: the function
> >     `org-ref-get-bibtex-key-and-file' is not known to be defined.
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
> > t Fri May 26 14:59:57 2017
> >
> > In org-ref-update-pre-post-text:
> > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> > interactive use
> >     only; use `delete-char' instead.
> >     org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
> >     interactive use
> >         only; use `delete-char' instead.
> >
> > In end of data:
> > org-ref-core.el:3498:1:Warning: the following functions are not known to
> > be def\
> > ined:
> >     org-ref-match-next-cite-link, org-ref-match-next-label-link,
> >         org-ref-match-next-ref-link,
> >             org-ref-make-org-link-cite-key-visible,
> >             org-in-commented-heading-p
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> > ex.el at Fri May 26 14:59:58 2017
> >
> > In org-ref-format-citation:
> > org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable `end'
> > org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
> > `path'
> > org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
> > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
> > argument,
> >     but requires 2-3
> >     org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
> >     `path'
> >
> > In org-ref-helm-load-completions-async:
> > org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
> >     `bibtex-completion-cached-candidates'
> >     org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
> >         `bibtex-completion-bibliography-hash'
> >
> > In org-ref-browser:
> > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> > function (as
> >     of 25.1); use `outline-show-all' instead.
> >     org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
> >         `count-key-pos'
> >         org-ref-helm-bibtex.el:715:68:Warning: reference to free
> >         variable
> >             `count-key-pos'
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
> > t Fri May 26 14:59:58 2017
> >
> > In org-ref:
> > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
> > `matches';
> >     use `push' or `cl-pushnew'
> >     org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
> >     `matches';
> >         use `push' or `cl-pushnew'
> >         org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
> >         var `matches';
> >             use `push' or `cl-pushnew'
> >             org-ref-helm.el:380:47:Warning: reference to free variable
> >             `org-latex-prefer-user-labels'
> >
> > Compiling file
> > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
> >  Fri May 26 14:59:59 2017
> >
> > In end of data:
> > org-ref-pdf.el:248:1:Warning: the following functions are not known to
> > be defin\
> > ed:
> >     pdf-view-assert-active-region, pdf-view-active-region-text,
> >         pdf-view-deactivate-region
> >
> > Lars
> 
> 
> --
> Professor John Kitchin
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> @johnkitchin
> http://kitchingroup.cheme.cmu.edu
> 

^ permalink raw reply	[flat|nested] 7+ messages in thread

* Re: Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref)
  2017-05-27 20:51   ` Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref) Lars Bjørndal
@ 2017-05-27 21:41     ` John Kitchin
  2017-05-28  8:09       ` Lars Bjørndal
  0 siblings, 1 reply; 7+ messages in thread
From: John Kitchin @ 2017-05-27 21:41 UTC (permalink / raw)
  To: Lars Bjørndal, emacs-orgmode@gnu.org

[-- Attachment #1: Type: text/plain, Size: 7518 bytes --]

You might have to require org-id and a few other org-ref libs for wos,
Scopus and arxiv links. See the notes near the end of that document. I am
traveling sans emacs right now so I don't have the exact place to look, but
it is in a section on alternate builds I think.



On Sat, May 27, 2017 at 4:52 PM Lars Bjørndal <lars@lamasti.net> wrote:

> On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
> > I pushed a bunch of commits today to clean up a lot of these. There are
> > still a few that I don't know how to get rid of, but it should be a lot
> > cleaner now.
>
> Thanks a lot.
>
> To learn Org, Org-ref and exports, I tried to export the org-ref.org
> to LaTeX. The .tex file is produced, but I get the following error
> message:
>
>   user-error: Unable to resolve link:
> "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"
>
> What does that mean?
>
> Thanks and regards, Lars
>
> > Lars Bjørndal writes:
> >
> > > I installed org-ref from Elpa, and I got some warnings. Emacs version:
> > >
> > > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10) of
> 2017-05-02
> > >
> > > I'm not sure how critical these error messages are.
> > >
> > > Fri May 26 14:59:37 2017
> > > Entering directory `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
> > >
> > > In key-chord-input-method:
> > > key-chord.el:341:16:Warning: sit-for called with 3 arguments, but
> > > accepts only
> > >     1-2
> > > i May 26 14:59:45 2017
> > > Entering directory `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
> > >
> > > In helm-position:
> > > helm-lib.el:388:14:Warning: macro `helm-position' defined too late
> > >
> > > In end of data:
> > > helm-lib.el:1006:1:Warning: the following functions are not known to be
> > > defined\
> > > :
> > >     helm-interpret-value, helm-get-current-source
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
> > > tion.el at Fri May 26 14:59:54 2017
> > > Entering directory
> `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
> > >
> > > In end of data:
> > > bibtex-completion.el:1210:1:Warning: the following functions are not
> > > known to b\
> > > e defined:
> > >     reftex-what-macro, org-find-property,
> > >         reftex-locate-bibliography-files
> > >
> > > Entering directory `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
> > >
> > > In end of data:
> > > doi-utils.el:1361:1:Warning: the following functions are not known to
> be
> > > define\
> > > d:
> > >     org-ref-find-bibliography, reftex-get-bib-field,
> > >         org-ref-bib-citation
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
> > >  at Fri May 26 14:59:57 2017
> > >
> > > In org-ref-bibtex-assoc-pdf-with-entry:
> > > org-ref-bibtex.el:728:25:Warning: reference to free variable
> > >     `org-ref-pdf-directory'
> > >
> > > In orhc-bibtex-field-formatter:
> > > org-ref-bibtex.el:1092:27:Warning: reference to free variable
> > >     `org-ref-pdf-directory'
> > >     org-ref-bibtex.el:1098:27:Warning: reference to free variable
> > >         `org-ref-notes-directory'
> > >
> > > In end of data:
> > > org-ref-bibtex.el:1324:1:Warning: the following functions are not known
> > > to be d\
> > > efined:
> > >     reftex-get-bib-field, org-ref-find-bibliography
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
> > > el at Fri May 26 14:59:57 2017
> > >
> > > In end of data:
> > > org-ref-citeproc.el:919:1:Warning: the function
> > >     `org-ref-get-bibtex-key-and-file' is not known to be defined.
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el a\
> > > t Fri May 26 14:59:57 2017
> > >
> > > In org-ref-update-pre-post-text:
> > > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
> > > interactive use
> > >     only; use `delete-char' instead.
> > >     org-ref-core.el:3260:12:Warning: `delete-backward-char' is for
> > >     interactive use
> > >         only; use `delete-char' instead.
> > >
> > > In end of data:
> > > org-ref-core.el:3498:1:Warning: the following functions are not known
> to
> > > be def\
> > > ined:
> > >     org-ref-match-next-cite-link, org-ref-match-next-label-link,
> > >         org-ref-match-next-ref-link,
> > >             org-ref-make-org-link-cite-key-visible,
> > >             org-in-commented-heading-p
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
> > > ex.el at Fri May 26 14:59:58 2017
> > >
> > > In org-ref-format-citation:
> > > org-ref-helm-bibtex.el:308:22:Warning: assignment to free variable
> `end'
> > > org-ref-helm-bibtex.el:313:37:Warning: assignment to free variable
> > > `path'
> > > org-ref-helm-bibtex.el:313:37:Warning: reference to free variable `end'
> > > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with 1
> > > argument,
> > >     but requires 2-3
> > >     org-ref-helm-bibtex.el:313:18:Warning: reference to free variable
> > >     `path'
> > >
> > > In org-ref-helm-load-completions-async:
> > > org-ref-helm-bibtex.el:367:22:Warning: assignment to free variable
> > >     `bibtex-completion-cached-candidates'
> > >     org-ref-helm-bibtex.el:371:20:Warning: assignment to free variable
> > >         `bibtex-completion-bibliography-hash'
> > >
> > > In org-ref-browser:
> > > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
> > > function (as
> > >     of 25.1); use `outline-show-all' instead.
> > >     org-ref-helm-bibtex.el:712:61:Warning: assignment to free variable
> > >         `count-key-pos'
> > >         org-ref-helm-bibtex.el:715:68:Warning: reference to free
> > >         variable
> > >             `count-key-pos'
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el a\
> > > t Fri May 26 14:59:58 2017
> > >
> > > In org-ref:
> > > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical var
> > > `matches';
> > >     use `push' or `cl-pushnew'
> > >     org-ref-helm.el:317:54:Error: `add-to-list' can't use lexical var
> > >     `matches';
> > >         use `push' or `cl-pushnew'
> > >         org-ref-helm.el:306:39:Error: `add-to-list' can't use lexical
> > >         var `matches';
> > >             use `push' or `cl-pushnew'
> > >             org-ref-helm.el:380:47:Warning: reference to free variable
> > >             `org-latex-prefer-user-labels'
> > >
> > > Compiling file
> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el at\
> > >  Fri May 26 14:59:59 2017
> > >
> > > In end of data:
> > > org-ref-pdf.el:248:1:Warning: the following functions are not known to
> > > be defin\
> > > ed:
> > >     pdf-view-assert-active-region, pdf-view-active-region-text,
> > >         pdf-view-deactivate-region
> > >
> > > Lars
> >
> >
> > --
> > Professor John Kitchin
> > Doherty Hall A207F
> > Department of Chemical Engineering
> > Carnegie Mellon University
> > Pittsburgh, PA 15213
> > 412-268-7803
> > @johnkitchin
> > http://kitchingroup.cheme.cmu.edu
> >
>
> --
John

-----------------------------------
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

[-- Attachment #2: Type: text/html, Size: 9845 bytes --]

^ permalink raw reply	[flat|nested] 7+ messages in thread

* Re: Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref)
  2017-05-27 21:41     ` John Kitchin
@ 2017-05-28  8:09       ` Lars Bjørndal
  2017-06-02 19:45         ` John Kitchin
  0 siblings, 1 reply; 7+ messages in thread
From: Lars Bjørndal @ 2017-05-28  8:09 UTC (permalink / raw)
  To: emacs-orgmode@gnu.org

Thank you. You wrote:

> You might have to require org-id and a few other org-ref libs for wos,
> Scopus and arxiv links. See the notes near the end of that document. I
> am traveling sans emacs right now so I don't have the exact place to
> look, but it is in a section on alternate builds I think.

Yes, I got it.

Please note that `org-id' is not mentioned in the org-ref.org file.

The .tex file is now prduced without errors/warnings. The pdf is
produced as well, but with warnings. Some of them are:

Package glossaries Warning: No \printglossary or \printglossaries
found.
(Remove \makeglossaries if you don't want any glossaries.)
This document will not have a glossary.

LaTeX Warning: There were undefined references.

Thanks and regards, Lars


> On Sat, May 27, 2017 at 4:52 PM Lars Bjørndal <[1]lars@lamasti.net>
> wrote:
> 
>   On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
>   > I pushed a bunch of commits today to clean up a lot of these.
>   There are
>   > still a few that I don't know how to get rid of, but it should be
>   a lot
>   > cleaner now.
>   Thanks a lot.
>   To learn Org, Org-ref and exports, I tried to export the
>   [2]org-ref.org
>   to LaTeX. The .tex file is produced, but I get the following error
>   message:
>     user-error: Unable to resolve link:
>   "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"
>   What does that mean?
>   Thanks and regards, Lars
>   > Lars Bjørndal writes:
>   >
>   > > I installed org-ref from Elpa, and I got some warnings. Emacs
>   version:
>   > >
>   > > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10)
>   of 2017-05-02
>   > >
>   > > I'm not sure how critical these error messages are.
>   > >
>   > > Fri May 26 14:59:37 2017
>   > > Entering directory
>   `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
>   > >
>   > > In key-chord-input-method:
>   > > key-chord.el:341:16:Warning: sit-for called with 3 arguments,
>   but
>   > > accepts only
>   > >     1-2
>   > > i May 26 14:59:45 2017
>   > > Entering directory
>   `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
>   > >
>   > > In helm-position:
>   > > helm-lib.el:388:14:Warning: macro `helm-position' defined too
>   late
>   > >
>   > > In end of data:
>   > > helm-lib.el:1006:1:Warning: the following functions are not
>   known to be
>   > > defined\
>   > > :
>   > >     helm-interpret-value, helm-get-current-source
>   > >
>   > > Compiling file
>   > >
>   /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
>   > > tion.el at Fri May 26 14:59:54 2017
>   > > Entering directory
>   `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
>   > >
>   > > In end of data:
>   > > bibtex-completion.el:1210:1:Warning: the following functions are
>   not
>   > > known to b\
>   > > e defined:
>   > >     reftex-what-macro, org-find-property,
>   > >         reftex-locate-bibliography-files
>   > >
>   > > Entering directory
>   `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
>   > >
>   > > In end of data:
>   > > doi-utils.el:1361:1:Warning: the following functions are not
>   known to be
>   > > define\
>   > > d:
>   > >     org-ref-find-bibliography, reftex-get-bib-field,
>   > >         org-ref-bib-citation
>   > >
>   > > Compiling file
>   > >
>   /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
>   > >  at Fri May 26 14:59:57 2017
>   > >
>   > > In org-ref-bibtex-assoc-pdf-with-entry:
>   > > org-ref-bibtex.el:728:25:Warning: reference to free variable
>   > >     `org-ref-pdf-directory'
>   > >
>   > > In orhc-bibtex-field-formatter:
>   > > org-ref-bibtex.el:1092:27:Warning: reference to free variable
>   > >     `org-ref-pdf-directory'
>   > >     org-ref-bibtex.el:1098:27:Warning: reference to free
>   variable
>   > >         `org-ref-notes-directory'
>   > >
>   > > In end of data:
>   > > org-ref-bibtex.el:1324:1:Warning: the following functions are
>   not known
>   > > to be d\
>   > > efined:
>   > >     reftex-get-bib-field, org-ref-find-bibliography
>   > >
>   > > Compiling file
>   > >
>   /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
>   > > el at Fri May 26 14:59:57 2017
>   > >
>   > > In end of data:
>   > > org-ref-citeproc.el:919:1:Warning: the function
>   > >     `org-ref-get-bibtex-key-and-file' is not known to be
>   defined.
>   > >
>   > > Compiling file
>   > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el
>   a\
>   > > t Fri May 26 14:59:57 2017
>   > >
>   > > In org-ref-update-pre-post-text:
>   > > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
>   > > interactive use
>   > >     only; use `delete-char' instead.
>   > >     org-ref-core.el:3260:12:Warning: `delete-backward-char' is
>   for
>   > >     interactive use
>   > >         only; use `delete-char' instead.
>   > >
>   > > In end of data:
>   > > org-ref-core.el:3498:1:Warning: the following functions are not
>   known to
>   > > be def\
>   > > ined:
>   > >     org-ref-match-next-cite-link, org-ref-match-next-label-link,
>   > >         org-ref-match-next-ref-link,
>   > >             org-ref-make-org-link-cite-key-visible,
>   > >             org-in-commented-heading-p
>   > >
>   > > Compiling file
>   > >
>   /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
>   > > ex.el at Fri May 26 14:59:58 2017
>   > >
>   > > In org-ref-format-citation:
>   > > org-ref-helm-bibtex.el:308:22:Warning: assignment to free
>   variable `end'
>   > > org-ref-helm-bibtex.el:313:37:Warning: assignment to free
>   variable
>   > > `path'
>   > > org-ref-helm-bibtex.el:313:37:Warning: reference to free
>   variable `end'
>   > > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with
>   1
>   > > argument,
>   > >     but requires 2-3
>   > >     org-ref-helm-bibtex.el:313:18:Warning: reference to free
>   variable
>   > >     `path'
>   > >
>   > > In org-ref-helm-load-completions-async:
>   > > org-ref-helm-bibtex.el:367:22:Warning: assignment to free
>   variable
>   > >     `bibtex-completion-cached-candidates'
>   > >     org-ref-helm-bibtex.el:371:20:Warning: assignment to free
>   variable
>   > >         `bibtex-completion-bibliography-hash'
>   > >
>   > > In org-ref-browser:
>   > > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
>   > > function (as
>   > >     of 25.1); use `outline-show-all' instead.
>   > >     org-ref-helm-bibtex.el:712:61:Warning: assignment to free
>   variable
>   > >         `count-key-pos'
>   > >         org-ref-helm-bibtex.el:715:68:Warning: reference to free
>   > >         variable
>   > >             `count-key-pos'
>   > >
>   > > Compiling file
>   > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el
>   a\
>   > > t Fri May 26 14:59:58 2017
>   > >
>   > > In org-ref:
>   > > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical
>   var
>   > > `matches';
>   > >     use `push' or `cl-pushnew'
>   > >     org-ref-helm.el:317:54:Error: `add-to-list' can't use
>   lexical var
>   > >     `matches';
>   > >         use `push' or `cl-pushnew'
>   > >         org-ref-helm.el:306:39:Error: `add-to-list' can't use
>   lexical
>   > >         var `matches';
>   > >             use `push' or `cl-pushnew'
>   > >             org-ref-helm.el:380:47:Warning: reference to free
>   variable
>   > >             `org-latex-prefer-user-labels'
>   > >
>   > > Compiling file
>   > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el
>   at\
>   > >  Fri May 26 14:59:59 2017
>   > >
>   > > In end of data:
>   > > org-ref-pdf.el:248:1:Warning: the following functions are not
>   known to
>   > > be defin\
>   > > ed:
>   > >     pdf-view-assert-active-region, pdf-view-active-region-text,
>   > >         pdf-view-deactivate-region
>   > >
>   > > Lars
>   >
>   >
>   > --
>   > Professor John Kitchin
>   > Doherty Hall A207F
>   > Department of Chemical Engineering
>   > Carnegie Mellon University
>   > Pittsburgh, PA 15213
>   > 412-268-7803
>   > @johnkitchin
>   > [3]http://kitchingroup.cheme.cmu.edu
>   >
> 
> --
> 
> John
> -----------------------------------
> Professor John Kitchin
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> @johnkitchin
> [4]http://kitchingroup.cheme.cmu.edu
> 
> References
> 
> 1. mailto:lars@lamasti.net
> 2. http://org-ref.org/
> 3. http://kitchingroup.cheme.cmu.edu/
> 4. http://kitchingroup.cheme.cmu.edu/

^ permalink raw reply	[flat|nested] 7+ messages in thread

* Re: Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref)
  2017-05-28  8:09       ` Lars Bjørndal
@ 2017-06-02 19:45         ` John Kitchin
  0 siblings, 0 replies; 7+ messages in thread
From: John Kitchin @ 2017-06-02 19:45 UTC (permalink / raw)
  To: Lars Bjørndal; +Cc: emacs-orgmode@gnu.org

I updated the documentation on the build requirements.

Lars Bjørndal writes:

> Thank you. You wrote:
>
>> You might have to require org-id and a few other org-ref libs for wos,
>> Scopus and arxiv links. See the notes near the end of that document. I
>> am traveling sans emacs right now so I don't have the exact place to
>> look, but it is in a section on alternate builds I think.
>
> Yes, I got it.
>
> Please note that `org-id' is not mentioned in the org-ref.org file.
>
> The .tex file is now prduced without errors/warnings. The pdf is
> produced as well, but with warnings. Some of them are:
>
> Package glossaries Warning: No \printglossary or \printglossaries
> found.
> (Remove \makeglossaries if you don't want any glossaries.)
> This document will not have a glossary.
>
> LaTeX Warning: There were undefined references.
>
> Thanks and regards, Lars
>
>
>> On Sat, May 27, 2017 at 4:52 PM Lars Bjørndal <[1]lars@lamasti.net>
>> wrote:
>>
>>   On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
>>   > I pushed a bunch of commits today to clean up a lot of these.
>>   There are
>>   > still a few that I don't know how to get rid of, but it should be
>>   a lot
>>   > cleaner now.
>>   Thanks a lot.
>>   To learn Org, Org-ref and exports, I tried to export the
>>   [2]org-ref.org
>>   to LaTeX. The .tex file is produced, but I get the following error
>>   message:
>>     user-error: Unable to resolve link:
>>   "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"
>>   What does that mean?
>>   Thanks and regards, Lars
>>   > Lars Bjørndal writes:
>>   >
>>   > > I installed org-ref from Elpa, and I got some warnings. Emacs
>>   version:
>>   > >
>>   > > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10)
>>   of 2017-05-02
>>   > >
>>   > > I'm not sure how critical these error messages are.
>>   > >
>>   > > Fri May 26 14:59:37 2017
>>   > > Entering directory
>>   `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
>>   > >
>>   > > In key-chord-input-method:
>>   > > key-chord.el:341:16:Warning: sit-for called with 3 arguments,
>>   but
>>   > > accepts only
>>   > >     1-2
>>   > > i May 26 14:59:45 2017
>>   > > Entering directory
>>   `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
>>   > >
>>   > > In helm-position:
>>   > > helm-lib.el:388:14:Warning: macro `helm-position' defined too
>>   late
>>   > >
>>   > > In end of data:
>>   > > helm-lib.el:1006:1:Warning: the following functions are not
>>   known to be
>>   > > defined\
>>   > > :
>>   > >     helm-interpret-value, helm-get-current-source
>>   > >
>>   > > Compiling file
>>   > >
>>   /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
>>   > > tion.el at Fri May 26 14:59:54 2017
>>   > > Entering directory
>>   `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
>>   > >
>>   > > In end of data:
>>   > > bibtex-completion.el:1210:1:Warning: the following functions are
>>   not
>>   > > known to b\
>>   > > e defined:
>>   > >     reftex-what-macro, org-find-property,
>>   > >         reftex-locate-bibliography-files
>>   > >
>>   > > Entering directory
>>   `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
>>   > >
>>   > > In end of data:
>>   > > doi-utils.el:1361:1:Warning: the following functions are not
>>   known to be
>>   > > define\
>>   > > d:
>>   > >     org-ref-find-bibliography, reftex-get-bib-field,
>>   > >         org-ref-bib-citation
>>   > >
>>   > > Compiling file
>>   > >
>>   /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
>>   > >  at Fri May 26 14:59:57 2017
>>   > >
>>   > > In org-ref-bibtex-assoc-pdf-with-entry:
>>   > > org-ref-bibtex.el:728:25:Warning: reference to free variable
>>   > >     `org-ref-pdf-directory'
>>   > >
>>   > > In orhc-bibtex-field-formatter:
>>   > > org-ref-bibtex.el:1092:27:Warning: reference to free variable
>>   > >     `org-ref-pdf-directory'
>>   > >     org-ref-bibtex.el:1098:27:Warning: reference to free
>>   variable
>>   > >         `org-ref-notes-directory'
>>   > >
>>   > > In end of data:
>>   > > org-ref-bibtex.el:1324:1:Warning: the following functions are
>>   not known
>>   > > to be d\
>>   > > efined:
>>   > >     reftex-get-bib-field, org-ref-find-bibliography
>>   > >
>>   > > Compiling file
>>   > >
>>   /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
>>   > > el at Fri May 26 14:59:57 2017
>>   > >
>>   > > In end of data:
>>   > > org-ref-citeproc.el:919:1:Warning: the function
>>   > >     `org-ref-get-bibtex-key-and-file' is not known to be
>>   defined.
>>   > >
>>   > > Compiling file
>>   > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el
>>   a\
>>   > > t Fri May 26 14:59:57 2017
>>   > >
>>   > > In org-ref-update-pre-post-text:
>>   > > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
>>   > > interactive use
>>   > >     only; use `delete-char' instead.
>>   > >     org-ref-core.el:3260:12:Warning: `delete-backward-char' is
>>   for
>>   > >     interactive use
>>   > >         only; use `delete-char' instead.
>>   > >
>>   > > In end of data:
>>   > > org-ref-core.el:3498:1:Warning: the following functions are not
>>   known to
>>   > > be def\
>>   > > ined:
>>   > >     org-ref-match-next-cite-link, org-ref-match-next-label-link,
>>   > >         org-ref-match-next-ref-link,
>>   > >             org-ref-make-org-link-cite-key-visible,
>>   > >             org-in-commented-heading-p
>>   > >
>>   > > Compiling file
>>   > >
>>   /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
>>   > > ex.el at Fri May 26 14:59:58 2017
>>   > >
>>   > > In org-ref-format-citation:
>>   > > org-ref-helm-bibtex.el:308:22:Warning: assignment to free
>>   variable `end'
>>   > > org-ref-helm-bibtex.el:313:37:Warning: assignment to free
>>   variable
>>   > > `path'
>>   > > org-ref-helm-bibtex.el:313:37:Warning: reference to free
>>   variable `end'
>>   > > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with
>>   1
>>   > > argument,
>>   > >     but requires 2-3
>>   > >     org-ref-helm-bibtex.el:313:18:Warning: reference to free
>>   variable
>>   > >     `path'
>>   > >
>>   > > In org-ref-helm-load-completions-async:
>>   > > org-ref-helm-bibtex.el:367:22:Warning: assignment to free
>>   variable
>>   > >     `bibtex-completion-cached-candidates'
>>   > >     org-ref-helm-bibtex.el:371:20:Warning: assignment to free
>>   variable
>>   > >         `bibtex-completion-bibliography-hash'
>>   > >
>>   > > In org-ref-browser:
>>   > > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
>>   > > function (as
>>   > >     of 25.1); use `outline-show-all' instead.
>>   > >     org-ref-helm-bibtex.el:712:61:Warning: assignment to free
>>   variable
>>   > >         `count-key-pos'
>>   > >         org-ref-helm-bibtex.el:715:68:Warning: reference to free
>>   > >         variable
>>   > >             `count-key-pos'
>>   > >
>>   > > Compiling file
>>   > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el
>>   a\
>>   > > t Fri May 26 14:59:58 2017
>>   > >
>>   > > In org-ref:
>>   > > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical
>>   var
>>   > > `matches';
>>   > >     use `push' or `cl-pushnew'
>>   > >     org-ref-helm.el:317:54:Error: `add-to-list' can't use
>>   lexical var
>>   > >     `matches';
>>   > >         use `push' or `cl-pushnew'
>>   > >         org-ref-helm.el:306:39:Error: `add-to-list' can't use
>>   lexical
>>   > >         var `matches';
>>   > >             use `push' or `cl-pushnew'
>>   > >             org-ref-helm.el:380:47:Warning: reference to free
>>   variable
>>   > >             `org-latex-prefer-user-labels'
>>   > >
>>   > > Compiling file
>>   > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el
>>   at\
>>   > >  Fri May 26 14:59:59 2017
>>   > >
>>   > > In end of data:
>>   > > org-ref-pdf.el:248:1:Warning: the following functions are not
>>   known to
>>   > > be defin\
>>   > > ed:
>>   > >     pdf-view-assert-active-region, pdf-view-active-region-text,
>>   > >         pdf-view-deactivate-region
>>   > >
>>   > > Lars
>>   >
>>   >
>>   > --
>>   > Professor John Kitchin
>>   > Doherty Hall A207F
>>   > Department of Chemical Engineering
>>   > Carnegie Mellon University
>>   > Pittsburgh, PA 15213
>>   > 412-268-7803
>>   > @johnkitchin
>>   > [3]http://kitchingroup.cheme.cmu.edu
>>   >
>>
>> --
>>
>> John
>> -----------------------------------
>> Professor John Kitchin
>> Doherty Hall A207F
>> Department of Chemical Engineering
>> Carnegie Mellon University
>> Pittsburgh, PA 15213
>> 412-268-7803
>> @johnkitchin
>> [4]http://kitchingroup.cheme.cmu.edu
>>
>> References
>>
>> 1. mailto:lars@lamasti.net
>> 2. http://org-ref.org/
>> 3. http://kitchingroup.cheme.cmu.edu/
>> 4. http://kitchingroup.cheme.cmu.edu/


--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

^ permalink raw reply	[flat|nested] 7+ messages in thread

end of thread, other threads:[~2017-06-02 19:45 UTC | newest]

Thread overview: 7+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2017-05-26 13:24 Warnings while installing org-ref Lars Bjørndal
2017-05-26 13:41 ` John Kitchin
2017-05-26 20:06 ` John Kitchin
2017-05-27 20:51   ` Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref) Lars Bjørndal
2017-05-27 21:41     ` John Kitchin
2017-05-28  8:09       ` Lars Bjørndal
2017-06-02 19:45         ` John Kitchin

Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/emacs/org-mode.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).