* [Bug][BABEL][R] Headers of the tables are not recognized during the export.
@ 2011-04-04 15:43 Vitalie Spinu
2011-04-04 17:36 ` Eric Schulte
0 siblings, 1 reply; 3+ messages in thread
From: Vitalie Spinu @ 2011-04-04 15:43 UTC (permalink / raw)
To: emacs-orgmode
Hello everyone!
Have a file like this:
--------------------------------------------
#+OPTIONS: H:3 num:nil toc:2 \n:nil @:t ::t |:t ^:{} -:t f:t *:t TeX:t LaTeX:t skip:t d:(HIDE) tags:not-in-toc
#+BABEL: :exports both :session *R* :cache no
#+TBLNAME: Chuah07
| condition | Mean.offer |
|-----------+------------|
| 1.MMM | 48.49 |
| 2.MMU | 42.59 |
| 3.MUM | 44.87 |
| 4.UMU | 46.43 |
| 5.UUM | 44.15 |
| 6.UUU | 43.80 |
| MAL | 46.28 |
| UK | 44.1 |
| All | 45.29 |
#+begin_src R :var data=Chuah07 :results output
str(data)
#+end_src
--------------------------------------------
If I run html export C-c C-e b, the output like this:
'data.frame': 9 obs. of 2 variables:
$ V1: chr "1.MMM" "2.MMU" "3.MUM" "4.UMU" ...
$ V2: num 48.5 42.6 44.9 46.4 44.1 ...
which means the header is not recognized.
In contrast if I run C-c C-c on the block everything is fine:
#+results
: 'data.frame': 9 obs. of 2 variables:
: $ condition : chr "1.MMM" "2.MMU" "3.MUM" "4.UMU" ...
: $ Mean.offer: num 48.5 42.6 44.9 46.4 44.1 ...
Also if I use :cache yes header. The html export recomputes the block.
Wouldn't it be reasonable to have the exporter take into account the :cache
header?
Thanks,
Vitalie.
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: [Bug][BABEL][R] Headers of the tables are not recognized during the export.
2011-04-04 15:43 [Bug][BABEL][R] Headers of the tables are not recognized during the export Vitalie Spinu
@ 2011-04-04 17:36 ` Eric Schulte
2011-04-05 16:04 ` Vitalie Spinu
0 siblings, 1 reply; 3+ messages in thread
From: Eric Schulte @ 2011-04-04 17:36 UTC (permalink / raw)
To: Vitalie Spinu; +Cc: emacs-orgmode
Vitalie Spinu <spinuvit.list@gmail.com> writes:
> Hello everyone!
>
> Have a file like this:
> --------------------------------------------
> #+OPTIONS: H:3 num:nil toc:2 \n:nil @:t ::t |:t ^:{} -:t f:t *:t TeX:t LaTeX:t skip:t d:(HIDE) tags:not-in-toc
> #+BABEL: :exports both :session *R* :cache no
> #+TBLNAME: Chuah07
> | condition | Mean.offer |
> |-----------+------------|
> | 1.MMM | 48.49 |
> | 2.MMU | 42.59 |
> | 3.MUM | 44.87 |
> | 4.UMU | 46.43 |
> | 5.UUM | 44.15 |
> | 6.UUU | 43.80 |
> | MAL | 46.28 |
> | UK | 44.1 |
> | All | 45.29 |
>
>
> #+begin_src R :var data=Chuah07 :results output
> str(data)
> #+end_src
>
> --------------------------------------------
>
> If I run html export C-c C-e b, the output like this:
>
> 'data.frame': 9 obs. of 2 variables:
> $ V1: chr "1.MMM" "2.MMU" "3.MUM" "4.UMU" ...
> $ V2: num 48.5 42.6 44.9 46.4 44.1 ...
>
> which means the header is not recognized.
>
> In contrast if I run C-c C-c on the block everything is fine:
>
> #+results
> : 'data.frame': 9 obs. of 2 variables:
> : $ condition : chr "1.MMM" "2.MMU" "3.MUM" "4.UMU" ...
> : $ Mean.offer: num 48.5 42.6 44.9 46.4 44.1 ...
>
Thanks for catching this, I've just pushed up a fix for this issue. The
column headers were being lost during the export processing.
>
>
> Also if I use :cache yes header. The html export recomputes the block.
> Wouldn't it be reasonable to have the exporter take into account the :cache
> header?
>
The exporter *does* take into account the :cache header, however, due to
the error above, the values of the inputs to the block of R code were
different on export than on interactive evaluation, so the cache was
invalidated as if the contents of the table had changed.
Cheers -- Eric
>
> Thanks,
> Vitalie.
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: [Bug][BABEL][R] Headers of the tables are not recognized during the export.
2011-04-04 17:36 ` Eric Schulte
@ 2011-04-05 16:04 ` Vitalie Spinu
0 siblings, 0 replies; 3+ messages in thread
From: Vitalie Spinu @ 2011-04-05 16:04 UTC (permalink / raw)
To: Eric Schulte; +Cc: emacs-orgmode
"Eric Schulte" <schulte.eric@gmail.com> writes:
>>
>
> Thanks for catching this, I've just pushed up a fix for this issue. The
> column headers were being lost during the export processing.
>
>>
>>
>> Also if I use :cache yes header. The html export recomputes the block.
>> Wouldn't it be reasonable to have the exporter take into account the :cache
>> header?
>>
>
> The exporter *does* take into account the :cache header, however, due to
> the error above, the values of the inputs to the block of R code were
> different on export than on interactive evaluation, so the cache was
> invalidated as if the contents of the table had changed.
Thanks Eric for your work.
This all org-babel thing is just amassing.
Vitalie.
>
> Cheers -- Eric
>
>>
>> Thanks,
>> Vitalie.
^ permalink raw reply [flat|nested] 3+ messages in thread
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2011-04-04 15:43 [Bug][BABEL][R] Headers of the tables are not recognized during the export Vitalie Spinu
2011-04-04 17:36 ` Eric Schulte
2011-04-05 16:04 ` Vitalie Spinu
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