* bug in 8.2.5f for using tables as data in python?
@ 2014-01-22 2:33 John Kitchin
2014-01-22 4:52 ` Nick Dokos
[not found] ` <1390394132.49030.YahooMailNeo@web171302.mail.ir2.yahoo.com>
0 siblings, 2 replies; 7+ messages in thread
From: John Kitchin @ 2014-01-22 2:33 UTC (permalink / raw)
To: emacs-orgmode@gnu.org
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Hi all,
I am having a problem in 8.2.5 using a table as a data source for a python
block. I get this particular error: org-babel-python-var-to-python: Wrong
type argument: stringp, 1
It seems to be that the 1 is not a string, but a number.
Here is what I have to reproduce the problem. the table works fine for an
emacs-lisp block.
#+BEGIN_SRC emacs-lisp :results value
(org-version)
#+END_SRC
#+RESULTS:
: 8.2.5f
#+BEGIN_SRC python
print 6
#+END_SRC
#+RESULTS:
: 6
#+tblname: data
| a | b |
|---+---|
| 1 | 2 |
| 3 | 4 |
| 5 | 6 |
#+BEGIN_SRC emacs-lisp :var tt=data
(princ tt)
#+END_SRC
#+RESULTS:
: ((1 2) (3 4) (5 6))
#+BEGIN_SRC python :var tt=data
print tt
#+END_SRC
executing Python code block...
org-babel-python-var-to-python: Wrong type argument: stringp, 1
Does anyone else see this?
John
-----------------------------------
John Kitchin
Associate Professor
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
http://kitchingroup.cheme.cmu.edu
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^ permalink raw reply [flat|nested] 7+ messages in thread* Re: bug in 8.2.5f for using tables as data in python?
2014-01-22 2:33 bug in 8.2.5f for using tables as data in python? John Kitchin
@ 2014-01-22 4:52 ` Nick Dokos
[not found] ` <1390394132.49030.YahooMailNeo@web171302.mail.ir2.yahoo.com>
1 sibling, 0 replies; 7+ messages in thread
From: Nick Dokos @ 2014-01-22 4:52 UTC (permalink / raw)
To: emacs-orgmode
John Kitchin <jkitchin@andrew.cmu.edu> writes:
> Does anyone else see this?
>
Yes. I seem to have different default header args (e.g. :results value
rather than :results output for the first python block and the table
gets printed out as a table, not as a lisp list, for the elisp block)
but the last python block gives me the same error.
--
Nick
^ permalink raw reply [flat|nested] 7+ messages in thread[parent not found: <1390394132.49030.YahooMailNeo@web171302.mail.ir2.yahoo.com>]
* Re: bug in 8.2.5f for using tables as data in python?
[not found] ` <1390394132.49030.YahooMailNeo@web171302.mail.ir2.yahoo.com>
@ 2014-01-22 12:41 ` Miguel Ruiz
2014-01-22 14:22 ` Bastien
0 siblings, 1 reply; 7+ messages in thread
From: Miguel Ruiz @ 2014-01-22 12:41 UTC (permalink / raw)
To: emacs-orgmode@gnu.org
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Could it be a poorly rewritten patch? Original Daniel Gerber's proposal works for me.
diff --git a/lisp/ob-python.el b/lisp/ob-python.el
index 1457682..523fd70 100644 (file)
--- a/lisp/ob-python.el
+++ b/lisp/ob-python.el
@@ -137,7 +137,7 @@ specifying a variable of the same value."
org-babel-python-hline-to
(format
(if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S")
- var))))
+ (substring-no-properties var)))))
(defun org-babel-python-table-or-string (results)
"Convert RESULTS into an appropriate elisp
value.
vs
http://lists.gnu.org/archive/html/emacs-orgmode/2014-01/msg00286.html
diff --git a/lisp/ob-python.el b/lisp/ob-python.el
index 1457682..baa5764 100644
--- a/lisp/ob-python.el
+++ b/lisp/ob-python.el
@@ -137,7 +137,7 @@ specifying a variable of the same value."
org-babel-python-hline-to
(format
(if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S")
- var))))
+ (if (stringp var) (substring-no-properties var) var)))))
(defun org-babel-python-table-or-string (results)
"Convert RESULTS into an appropriate elisp value.
Miguel.
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^ permalink raw reply related [flat|nested] 7+ messages in thread* Re: bug in 8.2.5f for using tables as data in python?
2014-01-22 12:41 ` Miguel Ruiz
@ 2014-01-22 14:22 ` Bastien
2014-01-22 15:58 ` Miguel Ruiz
0 siblings, 1 reply; 7+ messages in thread
From: Bastien @ 2014-01-22 14:22 UTC (permalink / raw)
To: Miguel Ruiz; +Cc: emacs-orgmode@gnu.org
Hi Miguel,
Miguel Ruiz <rbenit68@yahoo.es> writes:
> Could it be a poorly rewritten patch? Original Daniel Gerber's
> proposal works for me.
Can you tell what's wrong in the current version of ob-python.el
from git repo? Otherwise I'm not sure to understand.
Thanks,
--
Bastien
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: bug in 8.2.5f for using tables as data in python?
2014-01-22 14:22 ` Bastien
@ 2014-01-22 15:58 ` Miguel Ruiz
2014-01-22 16:11 ` Bastien
0 siblings, 1 reply; 7+ messages in thread
From: Miguel Ruiz @ 2014-01-22 15:58 UTC (permalink / raw)
To: Bastien; +Cc: emacs-orgmode@gnu.org
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Sorry, Bastien
At this moment, in ob-python.el you can see:
(defun org-babel-python-var-to-python (var) "Convert an elisp value to a python variable.
Convert an elisp value, VAR, into a string of python source code
specifying a variable of the same value." (if (listp var) (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]") (if (equal var 'hline) org-babel-python-hline-to (format (if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S") (substring-no-properties var)))))
But I understand that Daniel Gerber's proposal is (note the last line):
(defun org-babel-python-var-to-python (var) "Convert an elisp value to a python variable.
Convert an elisp value, VAR, into a string of python source code
specifying a variable of the same value." (if (listp var) (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]") (if (equal var 'hline) org-babel-python-hline-to (format (if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S") (if (stringp var) (substring-no-properties var) var)))))
And, related to the problem of the OP, this last code works for me.
Miguel
El Miércoles 22 de enero de 2014 15:23, Bastien <bzg@gnu.org> escribió:
Hi Miguel,
Miguel Ruiz <rbenit68@yahoo.es> writes:
> Could it be a poorly rewritten patch? Original Daniel Gerber's
> proposal works for me.
Can you tell what's wrong in the current version of ob-python.el
from git repo? Otherwise I'm not sure to understand.
Thanks,
--
Bastien
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^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: bug in 8.2.5f for using tables as data in python?
2014-01-22 15:58 ` Miguel Ruiz
@ 2014-01-22 16:11 ` Bastien
2014-01-22 16:39 ` John Kitchin
0 siblings, 1 reply; 7+ messages in thread
From: Bastien @ 2014-01-22 16:11 UTC (permalink / raw)
To: Miguel Ruiz; +Cc: emacs-orgmode@gnu.org
Miguel Ruiz <rbenit68@yahoo.es> writes:
> But I understand that Daniel Gerber's proposal is (note the last
> line):
Got it now. Fixed, thanks!
--
Bastien
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: bug in 8.2.5f for using tables as data in python?
2014-01-22 16:11 ` Bastien
@ 2014-01-22 16:39 ` John Kitchin
0 siblings, 0 replies; 7+ messages in thread
From: John Kitchin @ 2014-01-22 16:39 UTC (permalink / raw)
To: Bastien; +Cc: Miguel Ruiz, emacs-orgmode@gnu.org
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Confirmed. I just pulled the latest repository and it is fixed! Hooray, now
to finish exporting the manuscript I am trying to resubmit!
John
-----------------------------------
John Kitchin
Associate Professor
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
http://kitchingroup.cheme.cmu.edu
On Wed, Jan 22, 2014 at 11:11 AM, Bastien <bzg@gnu.org> wrote:
> Miguel Ruiz <rbenit68@yahoo.es> writes:
>
> > But I understand that Daniel Gerber's proposal is (note the last
> > line):
>
> Got it now. Fixed, thanks!
>
> --
> Bastien
>
>
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^ permalink raw reply [flat|nested] 7+ messages in thread
end of thread, other threads:[~2014-01-22 16:40 UTC | newest]
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2014-01-22 2:33 bug in 8.2.5f for using tables as data in python? John Kitchin
2014-01-22 4:52 ` Nick Dokos
[not found] ` <1390394132.49030.YahooMailNeo@web171302.mail.ir2.yahoo.com>
2014-01-22 12:41 ` Miguel Ruiz
2014-01-22 14:22 ` Bastien
2014-01-22 15:58 ` Miguel Ruiz
2014-01-22 16:11 ` Bastien
2014-01-22 16:39 ` John Kitchin
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