* using a table from one org-file as a variable in a code block in another org-file
@ 2012-11-26 16:47 John Kitchin
2012-11-26 17:32 ` Eric Schulte
0 siblings, 1 reply; 3+ messages in thread
From: John Kitchin @ 2012-11-26 16:47 UTC (permalink / raw)
To: emacs-orgmode
Hi everyone,
I have been using tables as variables for codeblocks on an org-file, e.g.
#+tblname: class-data
| user | oxide | xc |
| jkitchin | TiO2 | LDA|
...
#+BEGIN_SRC python :var data=class-data
from pylab import *
import numpy as np
vol = [x[1] if x[1] != '' else np.nan for x in data]
B = [x[2] if x[2] != '' else np.nan for x in data ]
scatter(vol, B)
xlabel('Volume ($\AA^3$)')
ylabel('Bulk modulus (GPa)')
title('All polymorphs of all oxides for all functionals')
show()
#+END_SRC
This is a fantastic feature, since I can have some code that is
expensive to run create the table, but then have analysis code that is
quick, since it only reads the table.
But, sometimes the tables are defined in other org-files. Is there a
way to specify a table from another org-file in the variable header?
Something like this would be pretty handy:
:var ./org-file.org::class-data
Especially if I could click on it, and have it open the other org-file
with point at the table!
Any thoughts? Thanks,
John
-----------------------------------
John Kitchin
Associate Professor
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
http://kitchingroup.cheme.cmu.edu
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: using a table from one org-file as a variable in a code block in another org-file
2012-11-26 16:47 using a table from one org-file as a variable in a code block in another org-file John Kitchin
@ 2012-11-26 17:32 ` Eric Schulte
2012-11-27 0:50 ` John Kitchin
0 siblings, 1 reply; 3+ messages in thread
From: Eric Schulte @ 2012-11-26 17:32 UTC (permalink / raw)
To: John Kitchin; +Cc: emacs-orgmode
[-- Attachment #1: Type: text/plain, Size: 1526 bytes --]
John Kitchin <jkitchin@andrew.cmu.edu> writes:
> Hi everyone,
>
> I have been using tables as variables for codeblocks on an org-file, e.g.
> #+tblname: class-data
> | user | oxide | xc |
> | jkitchin | TiO2 | LDA|
> ...
>
> #+BEGIN_SRC python :var data=class-data
> from pylab import *
> import numpy as np
>
> vol = [x[1] if x[1] != '' else np.nan for x in data]
> B = [x[2] if x[2] != '' else np.nan for x in data ]
>
> scatter(vol, B)
> xlabel('Volume ($\AA^3$)')
> ylabel('Bulk modulus (GPa)')
> title('All polymorphs of all oxides for all functionals')
> show()
> #+END_SRC
>
> This is a fantastic feature, since I can have some code that is
> expensive to run create the table, but then have analysis code that is
> quick, since it only reads the table.
>
> But, sometimes the tables are defined in other org-files. Is there a
> way to specify a table from another org-file in the variable header?
>
> Something like this would be pretty handy:
>
> :var ./org-file.org::class-data
>
> Especially if I could click on it, and have it open the other org-file
> with point at the table!
>
> Any thoughts? Thanks,
>
Hi John,
This feature does exist, and your guess at the syntax is almost correct.
To reference a variable named foo1 in a file named foo.org you would use
the following syntax, ":var data=foo.org:foo1".
See the attached foo.org and bar.org files for an example (in order to
work they must be in the same directory).
I'll make a note to mention this functionality in the documentation.
Best,
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: foo.org --]
[-- Type: text/x-org, Size: 62 bytes --]
#+name: foo1
| 1 |
| 2 |
| 3 |
| 4 |
| 5 |
| 6 |
| 7 |
| 8 |
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #3: bar.org --]
[-- Type: text/x-org, Size: 125 bytes --]
#+begin_src sh :var data=foo.org:foo1
echo "$data"
#+end_src
#+RESULTS:
| 1 |
| 2 |
| 3 |
| 4 |
| 5 |
| 6 |
| 7 |
| 8 |
[-- Attachment #4: Type: text/plain, Size: 296 bytes --]
>
> John
>
> -----------------------------------
> John Kitchin
> Associate Professor
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> http://kitchingroup.cheme.cmu.edu
>
--
Eric Schulte
http://cs.unm.edu/~eschulte
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: using a table from one org-file as a variable in a code block in another org-file
2012-11-26 17:32 ` Eric Schulte
@ 2012-11-27 0:50 ` John Kitchin
0 siblings, 0 replies; 3+ messages in thread
From: John Kitchin @ 2012-11-27 0:50 UTC (permalink / raw)
To: Eric Schulte; +Cc: emacs-orgmode
That is pretty awesome! Thanks!
John
-----------------------------------
John Kitchin
Associate Professor
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
http://kitchingroup.cheme.cmu.edu
On Mon, Nov 26, 2012 at 12:32 PM, Eric Schulte <schulte.eric@gmail.com> wrote:
> John Kitchin <jkitchin@andrew.cmu.edu> writes:
>
>> Hi everyone,
>>
>> I have been using tables as variables for codeblocks on an org-file, e.g.
>> #+tblname: class-data
>> | user | oxide | xc |
>> | jkitchin | TiO2 | LDA|
>> ...
>>
>> #+BEGIN_SRC python :var data=class-data
>> from pylab import *
>> import numpy as np
>>
>> vol = [x[1] if x[1] != '' else np.nan for x in data]
>> B = [x[2] if x[2] != '' else np.nan for x in data ]
>>
>> scatter(vol, B)
>> xlabel('Volume ($\AA^3$)')
>> ylabel('Bulk modulus (GPa)')
>> title('All polymorphs of all oxides for all functionals')
>> show()
>> #+END_SRC
>>
>> This is a fantastic feature, since I can have some code that is
>> expensive to run create the table, but then have analysis code that is
>> quick, since it only reads the table.
>>
>> But, sometimes the tables are defined in other org-files. Is there a
>> way to specify a table from another org-file in the variable header?
>>
>> Something like this would be pretty handy:
>>
>> :var ./org-file.org::class-data
>>
>> Especially if I could click on it, and have it open the other org-file
>> with point at the table!
>>
>> Any thoughts? Thanks,
>>
>
> Hi John,
>
> This feature does exist, and your guess at the syntax is almost correct.
> To reference a variable named foo1 in a file named foo.org you would use
> the following syntax, ":var data=foo.org:foo1".
>
> See the attached foo.org and bar.org files for an example (in order to
> work they must be in the same directory).
>
> I'll make a note to mention this functionality in the documentation.
>
> Best,
>
>
>
>>
>> John
>>
>> -----------------------------------
>> John Kitchin
>> Associate Professor
>> Doherty Hall A207F
>> Department of Chemical Engineering
>> Carnegie Mellon University
>> Pittsburgh, PA 15213
>> 412-268-7803
>> http://kitchingroup.cheme.cmu.edu
>>
>
> --
> Eric Schulte
> http://cs.unm.edu/~eschulte
>
^ permalink raw reply [flat|nested] 3+ messages in thread
end of thread, other threads:[~2012-11-27 0:50 UTC | newest]
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2012-11-26 16:47 using a table from one org-file as a variable in a code block in another org-file John Kitchin
2012-11-26 17:32 ` Eric Schulte
2012-11-27 0:50 ` John Kitchin
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