How to use xml src block as data input?

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* How to use xml src block as data input?
@ 2018-03-30  5:59 stardiviner
  2018-04-29 14:59 ` stardiviner
  2018-04-29 15:14 ` Bastien
  0 siblings, 2 replies; 10+ messages in thread
From: stardiviner @ 2018-03-30  5:59 UTC (permalink / raw)
  To: org-mode

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Hash: SHA256

I have a xml src block like this:

#+NAME: xml-sample
#+begin_src xml
<?xml version="1.0" encoding="utf-8"?>
<feed xmlns="http://www.w3.org/2005/Atom">

  <title>Example Feed</title>
  <link href="http://example.org/"/>
  <updated>2003-12-13T18:30:02Z</updated>
  <author>
    <name>John Doe</name>
  </author>
  <id>urn:uuid:60a76c80-d399-11d9-b93C-0003939e0af6</id>

  <entry>
    <title>Atom-Powered Robots Run Amok</title>
    <link rel="alternate" href="http://example.org/2003/12/13/atom03"/>
    <id>urn:uuid:1225c695-cfb8-4ebb-aaaa-80da344efa6a</id>
    <updated>2003-12-13T18:30:02Z</updated>
    <summary>Some text.</summary>
  </entry>

</feed>
#+end_src

How can I use this xml data as input in another src block?

I tried like this:

#+begin_src emacs-lisp :var sample=xml-sample
(elfeed-xml-parse-region sample)
#+end_src

But it reports no org-babel-execute for xml!
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^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: How to use xml src block as data input?
  2018-03-30  5:59 How to use xml src block as data input? stardiviner
@ 2018-04-29 14:59 ` stardiviner
  2018-04-29 17:30   ` John Kitchin
  2018-04-29 15:14 ` Bastien
  1 sibling, 1 reply; 10+ messages in thread
From: stardiviner @ 2018-04-29 14:59 UTC (permalink / raw)
  To: org-mode

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Is there somebody have any idea or hints about this question?

- -- 
[ stardiviner ] don't need to convince with trends.
       Blog: https://stardiviner.github.io/
       IRC(freenode): stardiviner
       GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
      
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^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: How to use xml src block as data input?
  2018-04-29 14:59 ` stardiviner
@ 2018-04-29 17:30   ` John Kitchin
  2018-04-30  3:42     ` stardiviner
  0 siblings, 1 reply; 10+ messages in thread
From: John Kitchin @ 2018-04-29 17:30 UTC (permalink / raw)
  To: numbchild; +Cc: org-mode

Here is one approach:

#+name: xml-data
#+BEGIN_EXAMPLE
<note>
<to>Tove</to>
<from>Jani</from>
<heading>Reminder</heading>
<body>Don't forget me this weekend!</body>
</note>
#+END_EXAMPLE


#+BEGIN_SRC python :var data=xml-data
import xml.etree.ElementTree as ET
root = ET.fromstring(data)
for child in root:
    print(child.tag, child.attrib)
#+END_SRC

#+RESULTS:
: to {}
: from {}
: heading {}
: body {}

#+BEGIN_SRC emacs-lisp :var data=xml-data
(with-temp-buffer (insert data) (libxml-parse-xml-region (point-min) (point-max)))
#+END_SRC

#+RESULTS:
| note | nil | (to nil Tove) | (from nil Jani) | (heading nil Reminder) | (body nil Don't forget me this weekend!) |



stardiviner writes:

> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA256
>
>
> Is there somebody have any idea or hints about this question?
>
> - --
> [ stardiviner ] don't need to convince with trends.
>        Blog: https://stardiviner.github.io/
>        IRC(freenode): stardiviner
>        GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
>
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--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: How to use xml src block as data input?
  2018-04-29 17:30   ` John Kitchin
@ 2018-04-30  3:42     ` stardiviner
  2018-04-30  9:47       ` Simonyi András
  0 siblings, 1 reply; 10+ messages in thread
From: stardiviner @ 2018-04-30  3:42 UTC (permalink / raw)
  To: John Kitchin; +Cc: org-mode

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Hash: SHA256


Thanks, I forgot to mention I know example block can be used as input.
But this will lose the syntax highlighting. If there is no better solution.
I guess it is the best for now.

- --
[ stardiviner ] don't need to convince with trends.
       Blog: https://stardiviner.github.io/
       IRC(freenode): stardiviner
       GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
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^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: How to use xml src block as data input?
  2018-04-30  3:42     ` stardiviner
@ 2018-04-30  9:47       ` Simonyi András
  2018-04-30 13:34         ` John Kitchin
  0 siblings, 1 reply; 10+ messages in thread
From: Simonyi András @ 2018-04-30  9:47 UTC (permalink / raw)
  To: numbchild; +Cc: emacs-orgmode list, John Kitchin

Hello,

if having the data in a source block is a must, then, as a last resort,
  you might try to pull the block's content from the buffer's parse tree:

#+begin_src emacs-lisp :var src-block-name="xml-sample"
   (let ((xml-str
      (org-element-map (org-element-parse-buffer) 'src-block
        (lambda (x)
          (and (string= src-block-name (org-element-property :name x))
           (org-element-property :value x)))
        nil t)))
     (with-temp-buffer (insert xml-str) (libxml-parse-xml-region (point-min)
(point-max))))
#+end_src
On Mon, 30 Apr 2018 at 05:43, stardiviner <numbchild@gmail.com> wrote:

> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA256


> Thanks, I forgot to mention I know example block can be used as input.
> But this will lose the syntax highlighting. If there is no better
solution.
> I guess it is the best for now.

> - --
> [ stardiviner ] don't need to convince with trends.
>         Blog: https://stardiviner.github.io/
>         IRC(freenode): stardiviner
>         GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
> -----BEGIN PGP SIGNATURE-----

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^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: How to use xml src block as data input?
  2018-04-30  9:47       ` Simonyi András
@ 2018-04-30 13:34         ` John Kitchin
  2018-05-01  3:36           ` [SOLVED] " stardiviner
  0 siblings, 1 reply; 10+ messages in thread
From: John Kitchin @ 2018-04-30 13:34 UTC (permalink / raw)
  To: Simonyi András; +Cc: emacs-orgmode list

Here is a minor variation on this idea:

#+name: xml-example
#+BEGIN_SRC xml
<note>
<to>Tove</to>
<from>Jani</from>
<heading>Reminder</heading>
<body>Don't forget me this weekend!</body>
</note>
#+END_SRC

#+BEGIN_SRC emacs-lisp :var name="xml-example"
(save-excursion
  (org-babel-goto-named-src-block name)
  (let ((data (org-element-property :value (org-element-context))))
    (with-temp-buffer (insert data) (libxml-parse-xml-region (point-min) (point-max)))))
#+END_SRC

#+RESULTS:
| note | nil | (to nil Tove) | (from nil Jani) | (heading nil Reminder)
| (body nil Don't forget me this weekend!) |


Simonyi András writes:

> Hello,
>
> if having the data in a source block is a must, then, as a last resort,
>   you might try to pull the block's content from the buffer's parse tree:
>
> #+begin_src emacs-lisp :var src-block-name="xml-sample"
>    (let ((xml-str
>       (org-element-map (org-element-parse-buffer) 'src-block
>         (lambda (x)
>           (and (string= src-block-name (org-element-property :name x))
>            (org-element-property :value x)))
>         nil t)))
>      (with-temp-buffer (insert xml-str) (libxml-parse-xml-region (point-min)
> (point-max))))
> #+end_src
> On Mon, 30 Apr 2018 at 05:43, stardiviner <numbchild@gmail.com> wrote:
>
>> -----BEGIN PGP SIGNED MESSAGE-----
>> Hash: SHA256
>
>
>> Thanks, I forgot to mention I know example block can be used as input.
>> But this will lose the syntax highlighting. If there is no better
> solution.
>> I guess it is the best for now.
>
>> - --
>> [ stardiviner ] don't need to convince with trends.
>>         Blog: https://stardiviner.github.io/
>>         IRC(freenode): stardiviner
>>         GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
>> -----BEGIN PGP SIGNATURE-----
>
>> iQEzBAEBCAAdFiEE8J9lDX1nSBmJJZFAG13xyVromsMFAlrmkL0ACgkQG13xyVro
>> msOU6gf/UNiTzSt8Cizpk1FLBjJJiqOMfWdvp+jJVoNOCJzaxkHFAiwjbEyIf9B5
>> k27Zw3Gh60rT0iz/RYscptv2keTieUwU0rf23oyouFESgIBaICfRRYzZZ0ZUWTHO
>> 9VGILsaQfOZfO4lenZGMnWGt583DCV1CxEqcODQj2Z7DFb8EfxvRiGup9qPjMSVq
>> 65gu7/Vk2Y2d+cvUZU7t592b7D/5na5Dxy0jkuAEttXjoJrk4OHoxcmYMjbnoimq
>> DSUyu467YqtKKyyOgC8hEnatarkItDp6O5v/P8Ki/iVV5zSTiqkhriQYI9k/sPTV
>> xmI9WZEFOB5A8auvw9csQTUUny2Mjw==
>> =qQac
>> -----END PGP SIGNATURE-----


--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: [SOLVED] How to use xml src block as data input?
  2018-04-30 13:34         ` John Kitchin
@ 2018-05-01  3:36           ` stardiviner
  2018-05-01  4:14             ` John Kitchin
  0 siblings, 1 reply; 10+ messages in thread
From: stardiviner @ 2018-05-01  3:36 UTC (permalink / raw)
  To: John Kitchin; +Cc: emacs-orgmode list, Simonyi András

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Hash: SHA256

Thanks, John and Simonyi. This is a solution on Elisp. Not general way.
But as a intermedia step, really workable. I chose this method.

BTW, is it possible to archived with noweb reference <<xml-data>> ?
Like

#+begin_src python :var data=<<xml-data>>
...
#+end_src

- -- 
[ stardiviner ] don't need to convince with trends.
       Blog: https://stardiviner.github.io/
       IRC(freenode): stardiviner
       GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
      
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^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: [SOLVED] How to use xml src block as data input?
  2018-05-01  3:36           ` [SOLVED] " stardiviner
@ 2018-05-01  4:14             ` John Kitchin
  2018-05-01 13:10               ` stardiviner
  0 siblings, 1 reply; 10+ messages in thread
From: John Kitchin @ 2018-05-01  4:14 UTC (permalink / raw)
  To: stardiviner; +Cc: emacs-orgmode list, Simonyi András

[-- Attachment #1: Type: text/plain, Size: 1984 bytes --]

all things in emacs are elisp...

You can use this function:

#+BEGIN_SRC emacs-lisp
(defun get-xml (name)
  (save-excursion
    (org-babel-goto-named-src-block name)
    (org-element-property :value (org-element-context))))
#+END_SRC

#+RESULTS:
: get-xml

like this in a python (or other general lang) block to get the xml as a
string that you parse in the language:

#+BEGIN_SRC python :var data=(get-xml "xml-example")
import xml.etree.ElementTree as ET
root = ET.fromstring(data)
for child in root:
    print(child.tag, child.attrib)
#+END_SRC

#+RESULTS:
: to {}
: from {}
: heading {}
: body {}

I don't know about noweb.

John

-----------------------------------
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu


On Mon, Apr 30, 2018 at 8:36 PM, stardiviner <numbchild@gmail.com> wrote:

> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA256
>
> Thanks, John and Simonyi. This is a solution on Elisp. Not general way.
> But as a intermedia step, really workable. I chose this method.
>
> BTW, is it possible to archived with noweb reference <<xml-data>> ?
> Like
>
> #+begin_src python :var data=<<xml-data>>
> ...
> #+end_src
>
> - --
> [ stardiviner ] don't need to convince with trends.
>        Blog: https://stardiviner.github.io/
>        IRC(freenode): stardiviner
>        GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
>
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> =fImh
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>

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^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: [SOLVED] How to use xml src block as data input?
  2018-05-01  4:14             ` John Kitchin
@ 2018-05-01 13:10               ` stardiviner
  0 siblings, 0 replies; 10+ messages in thread
From: stardiviner @ 2018-05-01 13:10 UTC (permalink / raw)
  To: John Kitchin; +Cc: emacs-orgmode list, Simonyi András

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

This is great. Thanks John.

- -- 
[ stardiviner ] don't need to convince with trends.
       Blog: https://stardiviner.github.io/
       IRC(freenode): stardiviner
       GPG: F09F650D7D674819892591401B5DF1C95AE89AC3
      
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^ permalink raw reply	[flat|nested] 10+ messages in thread

* Re: How to use xml src block as data input?
  2018-03-30  5:59 How to use xml src block as data input? stardiviner
  2018-04-29 14:59 ` stardiviner
@ 2018-04-29 15:14 ` Bastien
  1 sibling, 0 replies; 10+ messages in thread
From: Bastien @ 2018-04-29 15:14 UTC (permalink / raw)
  To: stardiviner; +Cc: org-mode

Hi,

stardiviner <numbchild@gmail.com> writes:

> How can I use this xml data as input in another src block?

You would need to enclose the xml code within #+begin_example instead
of #+begin_src.  Also, elfeed-xml-parse-region will not work on a
string, it expects other arguments, so you might need to write your
own parsing function, maybe based on libxml-parse-xml-region if your
version of Emacs has libxml support.

HTH,

-- 
 Bastien

^ permalink raw reply	[flat|nested] 10+ messages in thread

end of thread, other threads:[~2018-05-01 13:10 UTC | newest]

Thread overview: 10+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2018-03-30  5:59 How to use xml src block as data input? stardiviner
2018-04-29 14:59 ` stardiviner
2018-04-29 17:30   ` John Kitchin
2018-04-30  3:42     ` stardiviner
2018-04-30  9:47       ` Simonyi András
2018-04-30 13:34         ` John Kitchin
2018-05-01  3:36           ` [SOLVED] " stardiviner
2018-05-01  4:14             ` John Kitchin
2018-05-01 13:10               ` stardiviner
2018-04-29 15:14 ` Bastien

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