Re: Images from R in LaTeX and PDF

From: Ben Ward <benjamin.ward@bathspa.org>
To: Erik Iverson <eriki@ccbr.umn.edu>
Cc: emacs-orgmode@gnu.org
Subject: Re: Images from R in LaTeX and PDF
Date: Fri, 7 Jan 2011 19:50:18 +0000	[thread overview]
Message-ID: <BLU0-SMTP818923085427A73CED930FF50B0@phx.gbl> (raw)
In-Reply-To: <4D276D3D.402@ccbr.umn.edu>

I'm using 7.4, which I think (unless a new versions recently arisen), 
the latest one, as it was recommended for interacting with R through babel.

Thanks,
Ben W.
On 07/01/2011 19:45, Erik Iverson wrote:
> And what version of org are you using?
>
> Ben Ward wrote:
>>
>> #+begin_src R :exports both
>>  full <- read.csv(file="~/Documents/BSc Biology/Third Year/BY6001-40 
>> - Dissertation/Data and Analysis/Evolution Results.csv", head=T)
>>  library("lattice")
>>  ecoli = subset(full, Bacterium=="E.coli")
>>  edett = subset(ecoli, Cleaner=="Dettol")
>>  egarl = subset(ecoli, Cleaner=="Garlic")
>> MIC.mod = lm(MIC. ~ 1+Challenge*Cleaner*Replicate, data=ecoli)
>> #+end_src
>>
>> #+begin_src R :file fig1.pdf
>>  xyplot( MIC.+fitted(MIC.mod) ~ Challenge, data=ecoli, 
>> xlab="Challenge", ylab="MIC %", auto.key=TRUE)
>> #+end_src
>>
>> #+attr_latex: width=0.6\textwidth wrap placement={h}{0.4\textwidth}
>> #+label: fig:one
>> #+caption: Linar Plot of real data and fitted model values
>> #+results: fig1
>> [[file:fig1.pdf]]
>>
>> In the case of this code, actually altering size works, but it keeps 
>> putting the image at the end of my document. Then other images, 
>> placed with pretty much the same code, give or take for filenames and 
>> such, won't increace in size, but will alter their movement.
>> I'm wondering if using pure latex for my images would be an easier 
>> solution.
>>
>> Cheers,
>> Ben.
>>
>>
>> On 07/01/2011 18:30, Thomas S. Dye wrote:
>>> Aloha Ben,
>>>
>>> Can you share an example that doesn't work for you?
>>>
>>> All the best,
>>> Tom
>>>
>>> On Jan 7, 2011, at 7:23 AM, Ben Ward wrote:
>>>
>>>> Hi All,
>>>>
>>>> I've been doing some work with babel and R to generate graphs that 
>>>> I've then been including useing attr latex.
>>>>
>>>> But when I include images the always appear very very small, even 
>>>> when I mess about with the width settings of the attr latex line 
>>>> and remove the options for wrap and such.
>>>>
>>>> Does anybody else use R with images and org, and could tell me how 
>>>> they handle including R graphics in their documents?
>>>>
>>>> Thanks,
>>>> Ben. W
>>>>
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>>>
>>
>>
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