* odd org-babel R behaviour
@ 2010-07-30 22:20 Neil Hepburn
2010-07-30 22:33 ` Eric Schulte
0 siblings, 1 reply; 2+ messages in thread
From: Neil Hepburn @ 2010-07-30 22:20 UTC (permalink / raw)
To: emacs-orgmode
After recently upgrading to the most recent org-mode, org-babel R and org-export have shown some rather peculiar behavior. After processing some R code, the results are printed out below the code block with
#+results:
#+begin_example
blah blah blah (at least that's what I suspect reviewers at the last journal I submitted to called the output)
#+end_example
Now, when I go to export my org file to pdf, the R-output does not appear. However, if I go through and either delete the #+results: line or put a blank line between it and #+begin_example, the export works fine and the output from R appears. The same is true if I export to HTML.
Now that I know the fix, the problem is easy enough to deal with as I go through a batch of experiments.
-Neil
=============================================
Neil Hepburn, Economics Instructor
Department of Social Sciences, Augustana Faculty
University of Alberta
4901-46 Avenue
Camrose, Alberta T4V 2R3
Phone (780) 679-1588
email nhepburn@ualberta.ca
No trees were harmed in creating this message. (However, millions of electrons were terribly disturbed.)
^ permalink raw reply [flat|nested] 2+ messages in thread
* Re: odd org-babel R behaviour
2010-07-30 22:20 odd org-babel R behaviour Neil Hepburn
@ 2010-07-30 22:33 ` Eric Schulte
0 siblings, 0 replies; 2+ messages in thread
From: Eric Schulte @ 2010-07-30 22:33 UTC (permalink / raw)
To: Neil Hepburn; +Cc: emacs-orgmode
Hi Neil,
It sounds like you have blocks of R code which are configured such that
their results are not exported. You could try setting the :exports
header argument [1] to either "results" or "both" on the block, subtree,
or buffer, language, or system level [2].
Best -- Eric
Neil Hepburn <nhepburn@ualberta.ca> writes:
> After recently upgrading to the most recent org-mode, org-babel R and org-export have shown some rather peculiar behavior. After processing some R code, the results are printed out below the code block with
>
> #+results:
> #+begin_example
> blah blah blah (at least that's what I suspect reviewers at the last journal I submitted to called the output)
> #+end_example
>
> Now, when I go to export my org file to pdf, the R-output does not appear. However, if I go through and either delete the #+results: line or put a blank line between it and #+begin_example, the export works fine and the output from R appears. The same is true if I export to HTML.
>
> Now that I know the fix, the problem is easy enough to deal with as I go through a batch of experiments.
>
> -Neil
>
>
>
> =============================================
> Neil Hepburn, Economics Instructor
> Department of Social Sciences, Augustana Faculty
> University of Alberta
> 4901-46 Avenue
> Camrose, Alberta T4V 2R3
>
> Phone (780) 679-1588
> email nhepburn@ualberta.ca
>
> No trees were harmed in creating this message. (However, millions of electrons were terribly disturbed.)
>
>
> _______________________________________________
> Emacs-orgmode mailing list
> Please use `Reply All' to send replies to the list.
> Emacs-orgmode@gnu.org
> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Footnotes:
[1] http://orgmode.org/manual/exports.html#exports
[2] http://orgmode.org/manual/Using-header-arguments.html#Using-header-arguments
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