* running a source code by name @ 2018-05-28 11:13 Julian M. Burgos 2018-05-28 14:35 ` Eric S Fraga 2018-05-28 22:58 ` Nick Dokos 0 siblings, 2 replies; 8+ messages in thread From: Julian M. Burgos @ 2018-05-28 11:13 UTC (permalink / raw) To: emacs-orgmode Dear list, I have an org file with an R source code block. I want to have a second code block with an elisp call to run that first code. Something like this #+begin_src emacs-lisp :results silent :tangle no ... Some elisp code to run the "myRcode" block. #+end_src #+NAME: myRcode #+beg in_src R :results silent :tangle no ... My R code here #+end_src What would be the best way to do it? Many thanks, Julian -- Julian Mariano Burgos, PhD Hafrannsóknastofnun, rannsókna- og ráðgjafarstofnun hafs og vatna/ Marine and Freshwater Research Institute Botnsjávarsviðs / Demersal Division Skúlagata 4, 121 Reykjavík, Iceland Sími/Telephone : +354-5752037 Bréfsími/Telefax: +354-5752001 Netfang/Email: julian.burgos@hafogvatn.is ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: running a source code by name 2018-05-28 11:13 running a source code by name Julian M. Burgos @ 2018-05-28 14:35 ` Eric S Fraga 2018-05-28 16:25 ` Berry, Charles 2018-05-28 22:58 ` Nick Dokos 1 sibling, 1 reply; 8+ messages in thread From: Eric S Fraga @ 2018-05-28 14:35 UTC (permalink / raw) To: Julian M. Burgos; +Cc: emacs-orgmode [-- Attachment #1: Type: text/plain, Size: 552 bytes --] On Monday, 28 May 2018 at 11:13, Julian M. Burgos wrote: > Dear list, > > I have an org file with an R source code block. I want to have a second > code block with an elisp call to run that first code. Something like this > > > #+begin_src emacs-lisp :results silent :tangle no > > ... Some elisp code to run the "myRcode" block. Something along the lines of: (org-babel-goto-named-src-block "myRcode") (org-babel-execute-src-block) should do the job? -- Eric S Fraga via Emacs 27.0.50, Org release_9.1.6-591-gee336b [-- Attachment #2: signature.asc --] [-- Type: application/pgp-signature, Size: 194 bytes --] ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: running a source code by name 2018-05-28 14:35 ` Eric S Fraga @ 2018-05-28 16:25 ` Berry, Charles 2018-05-28 20:16 ` John Kitchin 0 siblings, 1 reply; 8+ messages in thread From: Berry, Charles @ 2018-05-28 16:25 UTC (permalink / raw) To: Eric S Fraga; +Cc: Julian M. Burgos, emacs-orgmode > On May 28, 2018, at 7:35 AM, Eric S Fraga <esflists@gmail.com> wrote: > > On Monday, 28 May 2018 at 11:13, Julian M. Burgos wrote: >> Dear list, >> >> I have an org file with an R source code block. I want to have a second >> code block with an elisp call to run that first code. Something like this >> >> >> #+begin_src emacs-lisp :results silent :tangle no >> >> ... Some elisp code to run the "myRcode" block. > > Something along the lines of: > > (org-babel-goto-named-src-block "myRcode") > (org-babel-execute-src-block) > > should do the job? Maybe wrap it in (save-excursion ... ) or use (org-sbe "myRcode") or (org-babel-ref-resolve "myRcode") which both can also pass :var args. HTH, Chuck ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: running a source code by name 2018-05-28 16:25 ` Berry, Charles @ 2018-05-28 20:16 ` John Kitchin 2018-05-28 20:30 ` Berry, Charles 0 siblings, 1 reply; 8+ messages in thread From: John Kitchin @ 2018-05-28 20:16 UTC (permalink / raw) To: Berry, Charles; +Cc: Eric S Fraga, Julian M. Burgos, emacs-orgmode [-- Attachment #1: Type: text/plain, Size: 1348 bytes --] Here is yet another variation, that may be suitable for what you want: #+name: myPyCode #+BEGIN_SRC python print('Hello') #+END_SRC #+BEGIN_SRC emacs-lisp :var results=myPyCode results #+END_SRC #+RESULTS: : Hello John ----------------------------------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Mon, May 28, 2018 at 9:25 AM, Berry, Charles <ccberry@ucsd.edu> wrote: > > > > On May 28, 2018, at 7:35 AM, Eric S Fraga <esflists@gmail.com> wrote: > > > > On Monday, 28 May 2018 at 11:13, Julian M. Burgos wrote: > >> Dear list, > >> > >> I have an org file with an R source code block. I want to have a second > >> code block with an elisp call to run that first code. Something like > this > >> > >> > >> #+begin_src emacs-lisp :results silent :tangle no > >> > >> ... Some elisp code to run the "myRcode" block. > > > > Something along the lines of: > > > > (org-babel-goto-named-src-block "myRcode") > > (org-babel-execute-src-block) > > > > should do the job? > > Maybe wrap it in > > (save-excursion ... ) > > or use > > (org-sbe "myRcode") > > or > > (org-babel-ref-resolve "myRcode") > > which both can also pass :var args. > > HTH, > > Chuck > > > > > [-- Attachment #2: Type: text/html, Size: 2467 bytes --] ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: running a source code by name 2018-05-28 20:16 ` John Kitchin @ 2018-05-28 20:30 ` Berry, Charles 2018-05-30 6:59 ` Julian M. Burgos 0 siblings, 1 reply; 8+ messages in thread From: Berry, Charles @ 2018-05-28 20:30 UTC (permalink / raw) To: John Kitchin; +Cc: Eric S Fraga, Julian M. Burgos, emacs-orgmode OK, I have to note that this will also do the job that the OP requested: #+begin_src emacs-lisp :results silent :var result=myRcode #+end_src although it seems a little strange to write an empty src block for its side effects. I suppose I should have suggested this in the first place: #+begin_src emacs-lisp :results silent :noweb yes <<myRcode()>> #+end_src although the return value from the noweb reference could be troublesome depending on what else is included in the latter src block. Chuck > On May 28, 2018, at 1:16 PM, John Kitchin <jkitchin@andrew.cmu.edu> wrote: > > Here is yet another variation, that may be suitable for what you want: > > > #+name: myPyCode > #+BEGIN_SRC python > print('Hello') > #+END_SRC > > > #+BEGIN_SRC emacs-lisp :var results=myPyCode > results > #+END_SRC > > #+RESULTS: > : Hello > > > John > > ----------------------------------- > Professor John Kitchin > Doherty Hall A207F > Department of Chemical Engineering > Carnegie Mellon University > Pittsburgh, PA 15213 > 412-268-7803 > @johnkitchin > http://kitchingroup.cheme.cmu.edu > > > On Mon, May 28, 2018 at 9:25 AM, Berry, Charles <ccberry@ucsd.edu> wrote: > > > > On May 28, 2018, at 7:35 AM, Eric S Fraga <esflists@gmail.com> wrote: > > > > On Monday, 28 May 2018 at 11:13, Julian M. Burgos wrote: > >> Dear list, > >> > >> I have an org file with an R source code block. I want to have a second > >> code block with an elisp call to run that first code. Something like this > >> > >> > >> #+begin_src emacs-lisp :results silent :tangle no > >> > >> ... Some elisp code to run the "myRcode" block. > > > > Something along the lines of: > > > > (org-babel-goto-named-src-block "myRcode") > > (org-babel-execute-src-block) > > > > should do the job? > > Maybe wrap it in > > (save-excursion ... ) > > or use > > (org-sbe "myRcode") > > or > > (org-babel-ref-resolve "myRcode") > > which both can also pass :var args. > > HTH, > > Chuck > > > > > ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: running a source code by name 2018-05-28 20:30 ` Berry, Charles @ 2018-05-30 6:59 ` Julian M. Burgos 2018-05-30 16:16 ` Berry, Charles 0 siblings, 1 reply; 8+ messages in thread From: Julian M. Burgos @ 2018-05-30 6:59 UTC (permalink / raw) To: Berry, Charles; +Cc: Eric S Fraga, emacs-orgmode, John Kitchin Thanks guys. A combination of org-babel-goto-named-src-block and org-babel-execute-src-block did the trick. I am building an org template to create html presentations using the R package xaringan. In my case each slide is a markdown source block. The elisp block tangles everything into a Rmd file, and the R block runs rmarkdown::render and opens the resulting html file in a browser. Thanks again. :) Berry, Charles writes: > OK, I have to note that this will also do the job that the OP requested: > > #+begin_src emacs-lisp :results silent :var result=myRcode > > #+end_src > > although it seems a little strange to write an empty src block for its side effects. > > I suppose I should have suggested this in the first place: > > #+begin_src emacs-lisp :results silent :noweb yes > <<myRcode()>> > #+end_src > > although the return value from the noweb reference could be troublesome depending on what else is included in the latter src block. > > Chuck > >> On May 28, 2018, at 1:16 PM, John Kitchin <jkitchin@andrew.cmu.edu> wrote: >> >> Here is yet another variation, that may be suitable for what you want: >> >> >> #+name: myPyCode >> #+BEGIN_SRC python >> print('Hello') >> #+END_SRC >> >> >> #+BEGIN_SRC emacs-lisp :var results=myPyCode >> results >> #+END_SRC >> >> #+RESULTS: >> : Hello >> >> >> John >> >> ----------------------------------- >> Professor John Kitchin >> Doherty Hall A207F >> Department of Chemical Engineering >> Carnegie Mellon University >> Pittsburgh, PA 15213 >> 412-268-7803 >> @johnkitchin >> https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fkitchingroup.cheme.cmu.edu&data=02%7C01%7C%7Cfdaa27b411604ed32a0108d5c4d9fa01%7C8e105b94435e4303a61063620dbe162b%7C0%7C0%7C636631362846470731&sdata=4K%2B96NBf5KPaoz13laaAR0%2FaqY2FlefTLy%2BPXy6YtO8%3D&reserved=0 >> >> >> On Mon, May 28, 2018 at 9:25 AM, Berry, Charles <ccberry@ucsd.edu> wrote: >> >> >> > On May 28, 2018, at 7:35 AM, Eric S Fraga <esflists@gmail.com> wrote: >> > >> > On Monday, 28 May 2018 at 11:13, Julian M. Burgos wrote: >> >> Dear list, >> >> >> >> I have an org file with an R source code block. I want to have a second >> >> code block with an elisp call to run that first code. Something like this >> >> >> >> >> >> #+begin_src emacs-lisp :results silent :tangle no >> >> >> >> ... Some elisp code to run the "myRcode" block. >> > >> > Something along the lines of: >> > >> > (org-babel-goto-named-src-block "myRcode") >> > (org-babel-execute-src-block) >> > >> > should do the job? >> >> Maybe wrap it in >> >> (save-excursion ... ) >> >> or use >> >> (org-sbe "myRcode") >> >> or >> >> (org-babel-ref-resolve "myRcode") >> >> which both can also pass :var args. >> >> HTH, >> >> Chuck >> >> >> >> >> -- Julian Mariano Burgos, PhD Hafrannsóknastofnun, rannsókna- og ráðgjafarstofnun hafs og vatna/ Marine and Freshwater Research Institute Botnsjávarsviðs / Demersal Division Skúlagata 4, 121 Reykjavík, Iceland Sími/Telephone : +354-5752037 Bréfsími/Telefax: +354-5752001 Netfang/Email: julian.burgos@hafogvatn.is ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: running a source code by name 2018-05-30 6:59 ` Julian M. Burgos @ 2018-05-30 16:16 ` Berry, Charles 0 siblings, 0 replies; 8+ messages in thread From: Berry, Charles @ 2018-05-30 16:16 UTC (permalink / raw) To: Julian M. Burgos; +Cc: Eric S Fraga, emacs-orgmode, John Kitchin > On May 29, 2018, at 11:59 PM, Julian M. Burgos <julian.burgos@hafogvatn.is> wrote: > > I am building an org template to create html presentations using the R > package xaringan. In my case each slide is a markdown source block. > The elisp block tangles everything into a Rmd file, and the R block runs > rmarkdown::render and opens the resulting html file in a browser. > Oh. Maybe ox-ravel would save you some steps. It can turn *.org into *.Rmd with R, C/C++, and other language chunks. For examples, see the slidify.org and demos.org files at https://github.com/chasberry/orgmode-accessories HTH, Chuck ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: running a source code by name 2018-05-28 11:13 running a source code by name Julian M. Burgos 2018-05-28 14:35 ` Eric S Fraga @ 2018-05-28 22:58 ` Nick Dokos 1 sibling, 0 replies; 8+ messages in thread From: Nick Dokos @ 2018-05-28 22:58 UTC (permalink / raw) To: emacs-orgmode "Julian M. Burgos" <julian.burgos@hafogvatn.is> writes: > Dear list, > > I have an org file with an R source code block. I want to have a second > code block with an elisp call to run that first code. Something like this > > > #+begin_src emacs-lisp :results silent :tangle no > > ... Some elisp code to run the "myRcode" block. (org-sbe myRcode) Untested. > > #+end_src > > #+NAME: myRcode > #+beg in_src R :results silent :tangle no > > ... My R code here > > #+end_src > > What would be the best way to do it? > > Many thanks, > > Julian > > > -- > Julian Mariano Burgos, PhD > Hafrannsóknastofnun, rannsókna- og ráðgjafarstofnun hafs og vatna/ > Marine and Freshwater Research Institute > Botnsjávarsviðs / Demersal Division > Skúlagata 4, 121 Reykjavík, Iceland > Sími/Telephone : +354-5752037 > Bréfsími/Telefax: +354-5752001 > Netfang/Email: julian.burgos@hafogvatn.is > > -- Nick "There are only two hard problems in computer science: cache invalidation, naming things, and off-by-one errors." -Martin Fowler ^ permalink raw reply [flat|nested] 8+ messages in thread
end of thread, other threads:[~2018-05-30 16:17 UTC | newest] Thread overview: 8+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2018-05-28 11:13 running a source code by name Julian M. Burgos 2018-05-28 14:35 ` Eric S Fraga 2018-05-28 16:25 ` Berry, Charles 2018-05-28 20:16 ` John Kitchin 2018-05-28 20:30 ` Berry, Charles 2018-05-30 6:59 ` Julian M. Burgos 2018-05-30 16:16 ` Berry, Charles 2018-05-28 22:58 ` Nick Dokos
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