From: Daniele Pizzolli <dan@toel.it>
To: Org Mode <emacs-orgmode@gnu.org>
Subject: Re: Open Peer-Review Reproducible Publication with Org and GRASS
Date: Mon, 06 Jun 2016 22:11:44 +0200 [thread overview]
Message-ID: <87bn3ezzzzqdq7@me.localhost.invalid> (raw)
In-Reply-To: m2lh2m4ap0.fsf@gmail.com
On Fri, Jun 03 2016, Ken Mankoff wrote:
> Hi Org and GRASS lists,
>
> I just wanted to let these two lists know that I've just posted a
> paper written in Org and using GRASS (text-mode) and Python for the
> analysis. My goal was to create not just an open access publication,
> but a fully reproducible publication. This is an early announcement,
> and the paper may not pass peer review.
Hello Ken,
Thanks for sharing, I had only a brief look. In the meantime some
early thoughts while it downloads the data.
[]
> To make it easier to reproduce... including my emacs.org seems
> overkill. Including a Virtual Machine that contains everything,
> including my ~/.emacs.d/ and all the software and data seems like the
> right thing to do, but journals don't want to host a 20 GB VM with the
> publication.
Well, you need only the recipe to build the VM. Fortunately there are
a lot of tools that help to do this. Unfortunately there are too
many, and not all of them focus on the reproducible side...
In the meantime I saw few main problems in your current document:
- No "One build step"
- Hardcoded path, for example
root = "/Users/mankoff/Documents/Papers/B/Brinkerhoff/"
- I did not found the Grass installation part, I guess I will have an
error later...
- Missing latex toolchain installation
Are you interested in fixing those issues? If yes please share your
progress or ideas.
Best,
Daniele
next prev parent reply other threads:[~2016-06-06 20:11 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-06-03 14:19 Open Peer-Review Reproducible Publication with Org and GRASS Ken Mankoff
2016-06-03 14:57 ` Brett Viren
2016-06-06 20:12 ` Daniele Pizzolli
2016-06-06 9:08 ` Christian Moe
2016-06-06 20:11 ` Daniele Pizzolli [this message]
2016-06-06 23:01 ` Samuel Wales
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