From mboxrd@z Thu Jan 1 00:00:00 1970 From: Daniele Pizzolli Subject: Re: Open Peer-Review Reproducible Publication with Org and GRASS Date: Mon, 06 Jun 2016 22:11:44 +0200 Message-ID: <87bn3ezzzzqdq7@me.localhost.invalid> References: Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:34237) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bA0sM-0008Uk-C5 for emacs-orgmode@gnu.org; Mon, 06 Jun 2016 16:11:55 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bA0sI-0008JZ-IA for emacs-orgmode@gnu.org; Mon, 06 Jun 2016 16:11:53 -0400 Received: from relay6-d.mail.gandi.net ([217.70.183.198]:54240) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bA0sI-0008JH-BX for emacs-orgmode@gnu.org; Mon, 06 Jun 2016 16:11:50 -0400 Received: from mfilter34-d.gandi.net (mfilter34-d.gandi.net [217.70.178.165]) by relay6-d.mail.gandi.net (Postfix) with ESMTP id E4620FB8B3 for ; Mon, 6 Jun 2016 22:11:47 +0200 (CEST) Received: from relay6-d.mail.gandi.net ([IPv6:::ffff:217.70.183.198]) by mfilter34-d.gandi.net (mfilter34-d.gandi.net [::ffff:10.0.15.180]) (amavisd-new, port 10024) with ESMTP id KBbFJy6vpuJc for ; Mon, 6 Jun 2016 22:11:46 +0200 (CEST) Received: from localhost.invalid (host36-211-static.0-79-b.business.telecomitalia.it [79.0.211.36]) (Authenticated sender: me@toel.it) by relay6-d.mail.gandi.net (Postfix) with ESMTPSA id DCD4FFB8A3 for ; Mon, 6 Jun 2016 22:11:45 +0200 (CEST) List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: "Emacs-orgmode" To: Org Mode On Fri, Jun 03 2016, Ken Mankoff wrote: > Hi Org and GRASS lists, > > I just wanted to let these two lists know that I've just posted a > paper written in Org and using GRASS (text-mode) and Python for the > analysis. My goal was to create not just an open access publication, > but a fully reproducible publication. This is an early announcement, > and the paper may not pass peer review. Hello Ken, Thanks for sharing, I had only a brief look. In the meantime some early thoughts while it downloads the data. [] > To make it easier to reproduce... including my emacs.org seems > overkill. Including a Virtual Machine that contains everything, > including my ~/.emacs.d/ and all the software and data seems like the > right thing to do, but journals don't want to host a 20 GB VM with the > publication. Well, you need only the recipe to build the VM. Fortunately there are a lot of tools that help to do this. Unfortunately there are too many, and not all of them focus on the reproducible side... In the meantime I saw few main problems in your current document: - No "One build step" - Hardcoded path, for example root = "/Users/mankoff/Documents/Papers/B/Brinkerhoff/" - I did not found the Grass installation part, I guess I will have an error later... - Missing latex toolchain installation Are you interested in fixing those issues? If yes please share your progress or ideas. Best, Daniele