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* Bug: [babel] Order of definition of :var makes or breaks the results [8.2.5f (release_8.2.5f-545-g630096 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)]
@ 2014-01-21 14:17 Rainer M Krug
  2014-01-22 19:55 ` Rainer M Krug
  0 siblings, 1 reply; 2+ messages in thread
From: Rainer M Krug @ 2014-01-21 14:17 UTC (permalink / raw)
  To: emacs-orgmode

Depending on the order in which variables are declared, the definitions
are correct or wrong.

In the example below, if DUMMY is declared first and SPECIES and
SPECIES2 are declared via :var+ there are missing rownames and / or
colnames as well as mixups (see below).

If DUMMY is declared *after the first* table (SPECIES) everything works
as expected.

I don't know if it is the same in other languages.

Example:

#+PROPERTY: rownames yes
#+PROPERTY: colnames yes
#+PROPERTY: var DUMMY="dummy"

* Species names and iespece codes
#+NAME: SPECIES
|         | fullName        | shortName | iespece | IFNName         | color |
|---------+-----------------+-----------+---------+-----------------+-------|
| fagus   | Fagus sylvatica | fagus     |       3 | fagus_sylvatica | red   |
| quercus | Quercus robur   | quercus   |       4 | quercus_robur   | green |
#+PROPERTY: var+ SPECIES=SPECIES


* And some more
#+NAME: SPECIES2
|         | fullName      | shortName | iespece | IFNName       | color |
|---------+---------------+-----------+---------+---------------+-------|
| no idea | ffff          |           |         |               |       |
| quercus | Quercus robur | quercus   |       4 | quercus_robur | green |
#+PROPERTY: var+ SPECIES2=SPECIES2


* The code
#+begin_src R :exports both :results output
SPECIES
#+end_src

#+RESULTS:
:                fullName shortName iespece         IFNName color
: no idea Fagus sylvatica     fagus       3 fagus_sylvatica   red
: quercus   Quercus robur   quercus       4   quercus_robur green


#+begin_src R :exports both :results output
SPECIES2
#+end_src

#+RESULTS:
:                     X X.1           X.2   X.3
: Quercus robur quercus   4 quercus_robur green



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------------------------------------------------------------------------



Emacs  : GNU Emacs 24.3.1 (x86_64-apple-darwin13.0.0, NS apple-appkit-1265.00)
 of 2013-12-13 on Rainers-MacBook-Pro-2.local
Package: Org-mode version 8.2.5f (release_8.2.5f-545-g630096 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)

current state:
==============
(setq
 org-src-lang-modes '(("plantuml" . plantuml) ("ocaml" . tuareg) ("elisp" . emacs-lisp) ("ditaa" . artist) ("asymptote" . asy)
                      ("dot" . fundamental) ("sqlite" . sql) ("calc" . fundamental) ("C" . c) ("cpp" . c++) ("C++" . c++)
                      ("screen" . shell-script))
 org-hide-leading-stars t
 org-tab-first-hook '(org-hide-block-toggle-maybe org-src-native-tab-command-maybe org-babel-hide-result-toggle-maybe
                      org-babel-header-arg-expand)
 org-speed-command-hook '(org-speed-command-default-hook org-babel-speed-command-hook)
 org-ellipsis "〖 ✎ 〗"
 org-occur-hook '(org-first-headline-recenter)
 org-src-tab-acts-natively t
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-html-format-drawer-function '(lambda (name contents) contents)
 org-src-window-setup 'current-window
 org-latex-format-inlinetask-function 'ignore
 org-confirm-shell-link-function 'y-or-n-p
 org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default
 org-latex-format-headline-function 'org-latex-format-headline-default-function
 org-startup-indented t
 org-after-todo-state-change-hook '(org-clock-out-if-current)
 org-latex-format-drawer-function '(lambda (name contents) contents)
 org-odt-format-headline-function 'ignore
 org-from-is-user-regexp "\\<Rainer M Krug\\>"
 org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer)
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-babel-pre-tangle-hook '(save-buffer)
 org-mode-hook '(#[nil "\300\301\302\303\304$\207" [org-add-hook change-major-mode-hook org-show-block-all append local] 5]
                 #[nil "\300\301\302\303\304$\207" [org-add-hook change-major-mode-hook org-babel-show-result-all append local] 5]
                 org-babel-result-hide-spec org-babel-hide-all-hashes)
 org-ascii-format-drawer-function '(lambda (name contents width) contents)
 org-odt-format-inlinetask-function 'ignore
 org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point org-babel-execute-safely-maybe)
 org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers org-cycle-hide-inline-tasks org-cycle-show-empty-lines
                  org-optimize-window-after-visibility-change)
 org-plantuml-jar-path "/Users/rainerkrug/jar/plantuml.jar"
 org-latex-packages-alist '(("" "color") ("" "listings"))
 org-ctrl-k-protect-subtree "ask"
 org-babel-tangle-lang-exts '(("latex" . "tex") ("emacs-lisp" . "el"))
 org-confirm-elisp-link-function 'yes-or-no-p
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-odt-format-drawer-function '(lambda (name contents) contents)
 org-latex-listings t
 org-show-siblings '((default) (isearch t) (bookmark-jump . t))
 org-html-format-headline-function 'ignore
 org-structure-template-alist '(("le" "#+end_src \n\n#+begin_src emacs-lisp" "<src lang=\"R\">\n\n</src>")
                                ("lua" "#+begin_src lua \n  ?\n#+end_src" "<src lang=\"lua\">\n\n</src>")
                                ("r" "#+begin_src R ?\n\n#+end_src" "<src lang=\"R\">\n\n</src>")
                                ("s" "#+BEGIN_SRC ?\n\n#+END_SRC" "<src lang=\"?\">\n\n</src>")
                                ("e" "#+BEGIN_EXAMPLE\n?\n#+END_EXAMPLE" "<example>\n?\n</example>")
                                ("q" "#+BEGIN_QUOTE\n?\n#+END_QUOTE" "<quote>\n?\n</quote>")
                                ("v" "#+BEGIN_VERSE\n?\n#+END_VERSE" "<verse>\n?\n</verse>")
                                ("V" "#+BEGIN_VERBATIM\n?\n#+END_VERBATIM" "<verbatim>\n?\n</verbatim>")
                                ("c" "#+BEGIN_CENTER\n?\n#+END_CENTER" "<center>\n?\n</center>")
                                ("l" "#+BEGIN_LaTeX\n?\n#+END_LaTeX" "<literal style=\"latex\">\n?\n</literal>")
                                ("L" "#+LaTeX: " "<literal style=\"latex\">?</literal>")
                                ("h" "#+BEGIN_HTML\n?\n#+END_HTML" "<literal style=\"html\">\n?\n</literal>")
                                ("H" "#+HTML: " "<literal style=\"html\">?</literal>") ("a" "#+BEGIN_ASCII\n?\n#+END_ASCII" "")
                                ("A" "#+ASCII: " "") ("i" "#+INDEX: ?" "#+INDEX: ?")
                                ("I" "#+INCLUDE: %file ?" "<include file=%file markup=\"?\">"))
 org-babel-load-languages '((R . t) (latex . t) (sh . t) (plantuml . t) (emacs-lisp . t))
 org-src-preserve-indentation t
 org-babel-post-tangle-hook '(org-babel-run-post-tangle-script org-babel-mark-file-as-tangled)
 org-html-format-inlinetask-function 'ignore
 org-agenda-files '("~/org")
 org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
 org-confirm-babel-evaluate nil
 )
-- 
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa

Tel :       +33 - (0)9 53 10 27 44
Cell:       +33 - (0)6 85 62 59 98
Fax :       +33 - (0)9 58 10 27 44

Fax (D):    +49 - (0)3 21 21 25 22 44

email:      Rainer@krugs.de

Skype:      RMkrug

^ permalink raw reply	[flat|nested] 2+ messages in thread
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2014-01-21 14:17 Bug: [babel] Order of definition of :var makes or breaks the results [8.2.5f (release_8.2.5f-545-g630096 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)] Rainer M Krug
2014-01-22 19:55 ` Rainer M Krug

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