* Re: bug#58678: 28.2; :session in org-babel for python unexpected output [not found] <sxVuW0P3PBf84mwSgshzKajuil02oBV-lIw__yCB2BDbvus8N_37EimD2kYN7CMnjon6jfcrP9ohOeyksI4T5FRRCgWTNOY7UILTV9qcXpc=@proton.me> @ 2022-10-22 5:58 ` Ihor Radchenko 2022-10-24 14:51 ` Sergey 0 siblings, 1 reply; 3+ messages in thread From: Ihor Radchenko @ 2022-10-22 5:58 UTC (permalink / raw) To: Sergey, emacs-orgmode; +Cc: 58678 [Redirecting from Emacs bugs] [See the quote below for the original report] > #+RESULTS: > : >>> __PYTHON_EL_eval("try:\nwith open('/var/folders/dk/3btmprj123b_31jsp30thzrm0000gq/T/babel-9tY6uv/python-92ZLVe') as __org_babel_python_tmpfile:\nexec(compile(__org_babel_python_tmpfile.read(), __org_babel_python_tmpfile.name, 'exec'))\nexcept:\nraise\nfinally:\nprint(' > ``` I am unable to reproduce with the latest main on Linux. Sergey, could you please try to reproduce with the latest Org version from Git? See https://orgmode.org/manual/Feedback.html#Feedback Best, Ihor Sergey via "Bug reports for GNU Emacs, the Swiss army knife of text editors" <bug-gnu-emacs@gnu.org> writes: > Running the following org file in 'emacs -Q' leads to an unexpected > output as demonstrated below: > ``` > #+begin_src elisp > (setq org-babel-python-command "python3") > (setq python-shell-interpreter "/usr/bin/python3") > (org-babel-do-load-languages > 'org-babel-load-languages > '( > (python . t))) > #+end_src > > #+begin_src python :results output > print(2) > #+end_src > > #+RESULTS: > : 2 > > #+begin_src python :results output :session *python-test* > print(2) > #+end_src > > #+RESULTS: > : >>> __PYTHON_EL_eval("try:\nwith open('/var/folders/dk/3btmprj123b_31jsp30thzrm0000gq/T/babel-9tY6uv/python-92ZLVe') as __org_babel_python_tmpfile:\nexec(compile(__org_babel_python_tmpfile.read(), __org_babel_python_tmpfile.name, 'exec'))\nexcept:\nraise\nfinally:\nprint(' > ``` > > In GNU Emacs 28.2 (build 1, aarch64-apple-darwin21.6.0, NS appkit-2113.60 Version 12.6 (Build 21G115)) > of 2022-10-12 built on MAC-140754 > Windowing system distributor 'Apple', version 10.3.2113 > System Description:macOS 12.6 > > Configured using: > 'configure --disable-dependency-tracking --disable-silent-rules > --enable-locallisppath=/opt/homebrew/share/emacs/site-lisp > --infodir=/opt/homebrew/Cellar/emacs-plus@28/28.2/share/info/emacs > --prefix=/opt/homebrew/Cellar/emacs-plus@28/28.2 --with-xml2 > --with-gnutls --without-dbus --without-imagemagick --with-modules > --with-rsvg --with-ns --disable-ns-self-contained 'CFLAGS=-Os -w -pipe > -mmacosx-version-min=12 > -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk > -DFD_SETSIZE=10000 -DDARWIN_UNLIMITED_SELECT' > 'CPPFLAGS=-I/opt/homebrew/opt/icu4c/include > -I/opt/homebrew/opt/openssl@1.1/include > -I/opt/homebrew/opt/readline/include -isystem/opt/homebrew/include > -F/opt/homebrew/Frameworks > -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk' > 'LDFLAGS=-L/opt/homebrew/opt/icu4c/lib > -L/opt/homebrew/opt/openssl@1.1/lib -L/opt/homebrew/opt/readline/lib > -L/opt/homebrew/lib -F/opt/homebrew/Frameworks > -Wl,-headerpad_max_install_names > -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk'' > > Configured features: > ACL GLIB GMP GNUTLS JPEG JSON LCMS2 LIBXML2 MODULES NOTIFY KQUEUE NS > PDUMPER PNG RSVG THREADS TIFF TOOLKIT_SCROLL_BARS XIM ZLIB > > Important settings: > value of $LANG: en_US.UTF-8 > locale-coding-system: utf-8-unix > > Major mode: Info > > Minor modes in effect: > shell-dirtrack-mode: t > tooltip-mode: t > global-eldoc-mode: t > show-paren-mode: t > electric-indent-mode: t > mouse-wheel-mode: t > tool-bar-mode: t > menu-bar-mode: t > file-name-shadow-mode: t > global-font-lock-mode: t > font-lock-mode: t > blink-cursor-mode: t > auto-composition-mode: t > auto-encryption-mode: t > auto-compression-mode: t > buffer-read-only: t > line-number-mode: t > indent-tabs-mode: t > transient-mark-mode: t > > Load-path shadows: > None found. > > Features: > (shadow sort mail-extr emacsbug sendmail info warnings compile ob-python > python tramp-sh tramp tramp-loaddefs trampver tramp-integration files-x > tramp-compat shell ls-lisp vc-git diff-mode vc-dispatcher org-element > avl-tree generator ol-eww eww xdg url-queue thingatpt mm-url ol-rmail > ol-mhe ol-irc ol-info ol-gnus nnselect gnus-search eieio-opt cl-extra > help-mode speedbar ezimage dframe gnus-art mm-uu mml2015 mm-view > mml-smime smime dig gnus-sum shr kinsoku svg dom browse-url url > url-proxy url-privacy url-expand url-methods url-history url-cookie > url-domsuf url-util url-parse url-vars mailcap gnus-group gnus-undo > gnus-start gnus-dbus dbus xml gnus-cloud nnimap nnmail mail-source utf7 > netrc nnoo parse-time gnus-spec gnus-int gnus-range message rmc puny > rfc822 mml mml-sec epa derived epg rfc6068 epg-config mm-decode > mm-bodies mm-encode mail-parse rfc2231 mailabbrev gmm-utils mailheader > gnus-win gnus nnheader gnus-util rmail rmail-loaddefs auth-source cl-seq > eieio eieio-core cl-macs eieio-loaddefs password-cache rfc2047 rfc2045 > ietf-drums text-property-search mail-utils mm-util mail-prsvr wid-edit > ol-docview doc-view jka-compr image-mode exif dired dired-loaddefs > ol-bibtex ol-bbdb ol-w3m ol-doi org-link-doi org ob ob-tangle ob-ref > ob-lob ob-table ob-exp org-macro org-footnote org-src ob-comint > org-pcomplete pcomplete comint ansi-color ring org-list org-faces > org-entities noutline outline easy-mmode org-version ob-emacs-lisp > ob-core ob-eval org-table oc-basic json map bibtex iso8601 time-date > subr-x ol rx org-keys oc seq byte-opt gv bytecomp byte-compile cconv > org-compat advice org-macs org-loaddefs format-spec find-func cal-menu > calendar cal-loaddefs cl-loaddefs cl-lib iso-transl tooltip eldoc paren > electric uniquify ediff-hook vc-hooks lisp-float-type elisp-mode mwheel > term/ns-win ns-win ucs-normalize mule-util term/common-win tool-bar dnd > fontset image regexp-opt fringe tabulated-list replace newcomment > text-mode lisp-mode prog-mode register page tab-bar menu-bar rfn-eshadow > isearch easymenu timer select scroll-bar mouse jit-lock font-lock syntax > font-core term/tty-colors frame minibuffer cl-generic cham georgian > utf-8-lang misc-lang vietnamese tibetan thai tai-viet lao korean > japanese eucjp-ms cp51932 hebrew greek romanian slovak czech european > ethiopic indian cyrillic chinese composite emoji-zwj charscript charprop > case-table epa-hook jka-cmpr-hook help simple abbrev obarray > cl-preloaded nadvice button loaddefs faces cus-face macroexp files > window text-properties overlay sha1 md5 base64 format env code-pages > mule custom widget hashtable-print-readable backquote threads kqueue > cocoa ns lcms2 multi-tty make-network-process emacs) > > Memory information: > ((conses 16 217410 17812) > (symbols 48 22121 1) > (strings 32 80449 5421) > (string-bytes 1 2659099) > (vectors 16 40607) > (vector-slots 8 454675 43035) > (floats 8 276 108) > (intervals 56 1253 0) > (buffers 992 19)) > > Sent with [Proton Mail](https://proton.me/) secure email. -- Ihor Radchenko // yantar92, Org mode contributor, Learn more about Org mode at <https://orgmode.org/>. Support Org development at <https://liberapay.com/org-mode>, or support my work at <https://liberapay.com/yantar92> ^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: bug#58678: 28.2; :session in org-babel for python unexpected output 2022-10-22 5:58 ` bug#58678: 28.2; :session in org-babel for python unexpected output Ihor Radchenko @ 2022-10-24 14:51 ` Sergey 2022-10-25 6:15 ` Ihor Radchenko 0 siblings, 1 reply; 3+ messages in thread From: Sergey @ 2022-10-24 14:51 UTC (permalink / raw) To: Ihor Radchenko; +Cc: emacs-orgmode, 58678 I have traced this to org-bable issue with MacOS python readline and native completion. Similar issues discussed in https://github.com/jorgenschaefer/elpy/issues/887 and https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25753 The solution proposed in those threads, i.e., installing python from homebrew, which has gnureadline, helps for emacs 27 but causes freezing in emacs 28 after displaying following message: ``` Warning (python): Your ‘python-shell-interpreter’ doesn’t seem to support readline, yet ‘python-shell-completion-native-enable’ was t and "python3" is not part of the ‘python-shell-completion-native-disabled-interpreters’ list. Native completions have been disabled locally. ``` Setting ~python-shell-completion-native-enable~ to nil removes the warning but doesn't prevent freezing. This behaviour persists with minimal org setup as well (although, I believe my emacs comes with org pre-packaged). Cheers, Sergey. ------- Original Message ------- On Saturday, October 22nd, 2022 at 12:58 AM, Ihor Radchenko <yantar92@posteo.net> wrote: > [Redirecting from Emacs bugs] > [See the quote below for the original report] > > > #+RESULTS: > > : >>> __PYTHON_EL_eval("try:\nwith open('/var/folders/dk/3btmprj123b_31jsp30thzrm0000gq/T/babel-9tY6uv/python-92ZLVe') as __org_babel_python_tmpfile:\nexec(compile(__org_babel_python_tmpfile.read(), __org_babel_python_tmpfile.name, 'exec'))\nexcept:\nraise\nfinally:\nprint(' > > ``` > > > I am unable to reproduce with the latest main on Linux. > Sergey, could you please try to reproduce with the latest Org version > from Git? See https://orgmode.org/manual/Feedback.html#Feedback > > Best, > Ihor > > Sergey via "Bug reports for GNU Emacs, the Swiss army knife of text > editors" bug-gnu-emacs@gnu.org writes: > > > Running the following org file in 'emacs -Q' leads to an unexpected > > output as demonstrated below: > > ``` > > #+begin_src elisp > > (setq org-babel-python-command "python3") > > (setq python-shell-interpreter "/usr/bin/python3") > > (org-babel-do-load-languages > > 'org-babel-load-languages > > '( > > (python . t))) > > #+end_src > > > > #+begin_src python :results output > > print(2) > > #+end_src > > > > #+RESULTS: > > : 2 > > > > #+begin_src python :results output :session python-test > > print(2) > > #+end_src > > > > #+RESULTS: > > : >>> __PYTHON_EL_eval("try:\nwith open('/var/folders/dk/3btmprj123b_31jsp30thzrm0000gq/T/babel-9tY6uv/python-92ZLVe') as __org_babel_python_tmpfile:\nexec(compile(__org_babel_python_tmpfile.read(), __org_babel_python_tmpfile.name, 'exec'))\nexcept:\nraise\nfinally:\nprint(' > > ``` > > > > In GNU Emacs 28.2 (build 1, aarch64-apple-darwin21.6.0, NS appkit-2113.60 Version 12.6 (Build 21G115)) > > of 2022-10-12 built on MAC-140754 > > Windowing system distributor 'Apple', version 10.3.2113 > > System Description:macOS 12.6 > > > > Configured using: > > 'configure --disable-dependency-tracking --disable-silent-rules > > --enable-locallisppath=/opt/homebrew/share/emacs/site-lisp > > --infodir=/opt/homebrew/Cellar/emacs-plus@28/28.2/share/info/emacs > > --prefix=/opt/homebrew/Cellar/emacs-plus@28/28.2 --with-xml2 > > --with-gnutls --without-dbus --without-imagemagick --with-modules > > --with-rsvg --with-ns --disable-ns-self-contained 'CFLAGS=-Os -w -pipe > > -mmacosx-version-min=12 > > -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk > > -DFD_SETSIZE=10000 -DDARWIN_UNLIMITED_SELECT' > > 'CPPFLAGS=-I/opt/homebrew/opt/icu4c/include > > -I/opt/homebrew/opt/openssl@1.1/include > > -I/opt/homebrew/opt/readline/include -isystem/opt/homebrew/include > > -F/opt/homebrew/Frameworks > > -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk' > > 'LDFLAGS=-L/opt/homebrew/opt/icu4c/lib > > -L/opt/homebrew/opt/openssl@1.1/lib -L/opt/homebrew/opt/readline/lib > > -L/opt/homebrew/lib -F/opt/homebrew/Frameworks > > -Wl,-headerpad_max_install_names > > -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk'' > > > > Configured features: > > ACL GLIB GMP GNUTLS JPEG JSON LCMS2 LIBXML2 MODULES NOTIFY KQUEUE NS > > PDUMPER PNG RSVG THREADS TIFF TOOLKIT_SCROLL_BARS XIM ZLIB > > > > Important settings: > > value of $LANG: en_US.UTF-8 > > locale-coding-system: utf-8-unix > > > > Major mode: Info > > > > Minor modes in effect: > > shell-dirtrack-mode: t > > tooltip-mode: t > > global-eldoc-mode: t > > show-paren-mode: t > > electric-indent-mode: t > > mouse-wheel-mode: t > > tool-bar-mode: t > > menu-bar-mode: t > > file-name-shadow-mode: t > > global-font-lock-mode: t > > font-lock-mode: t > > blink-cursor-mode: t > > auto-composition-mode: t > > auto-encryption-mode: t > > auto-compression-mode: t > > buffer-read-only: t > > line-number-mode: t > > indent-tabs-mode: t > > transient-mark-mode: t > > > > Load-path shadows: > > None found. > > > > Features: > > (shadow sort mail-extr emacsbug sendmail info warnings compile ob-python > > python tramp-sh tramp tramp-loaddefs trampver tramp-integration files-x > > tramp-compat shell ls-lisp vc-git diff-mode vc-dispatcher org-element > > avl-tree generator ol-eww eww xdg url-queue thingatpt mm-url ol-rmail > > ol-mhe ol-irc ol-info ol-gnus nnselect gnus-search eieio-opt cl-extra > > help-mode speedbar ezimage dframe gnus-art mm-uu mml2015 mm-view > > mml-smime smime dig gnus-sum shr kinsoku svg dom browse-url url > > url-proxy url-privacy url-expand url-methods url-history url-cookie > > url-domsuf url-util url-parse url-vars mailcap gnus-group gnus-undo > > gnus-start gnus-dbus dbus xml gnus-cloud nnimap nnmail mail-source utf7 > > netrc nnoo parse-time gnus-spec gnus-int gnus-range message rmc puny > > rfc822 mml mml-sec epa derived epg rfc6068 epg-config mm-decode > > mm-bodies mm-encode mail-parse rfc2231 mailabbrev gmm-utils mailheader > > gnus-win gnus nnheader gnus-util rmail rmail-loaddefs auth-source cl-seq > > eieio eieio-core cl-macs eieio-loaddefs password-cache rfc2047 rfc2045 > > ietf-drums text-property-search mail-utils mm-util mail-prsvr wid-edit > > ol-docview doc-view jka-compr image-mode exif dired dired-loaddefs > > ol-bibtex ol-bbdb ol-w3m ol-doi org-link-doi org ob ob-tangle ob-ref > > ob-lob ob-table ob-exp org-macro org-footnote org-src ob-comint > > org-pcomplete pcomplete comint ansi-color ring org-list org-faces > > org-entities noutline outline easy-mmode org-version ob-emacs-lisp > > ob-core ob-eval org-table oc-basic json map bibtex iso8601 time-date > > subr-x ol rx org-keys oc seq byte-opt gv bytecomp byte-compile cconv > > org-compat advice org-macs org-loaddefs format-spec find-func cal-menu > > calendar cal-loaddefs cl-loaddefs cl-lib iso-transl tooltip eldoc paren > > electric uniquify ediff-hook vc-hooks lisp-float-type elisp-mode mwheel > > term/ns-win ns-win ucs-normalize mule-util term/common-win tool-bar dnd > > fontset image regexp-opt fringe tabulated-list replace newcomment > > text-mode lisp-mode prog-mode register page tab-bar menu-bar rfn-eshadow > > isearch easymenu timer select scroll-bar mouse jit-lock font-lock syntax > > font-core term/tty-colors frame minibuffer cl-generic cham georgian > > utf-8-lang misc-lang vietnamese tibetan thai tai-viet lao korean > > japanese eucjp-ms cp51932 hebrew greek romanian slovak czech european > > ethiopic indian cyrillic chinese composite emoji-zwj charscript charprop > > case-table epa-hook jka-cmpr-hook help simple abbrev obarray > > cl-preloaded nadvice button loaddefs faces cus-face macroexp files > > window text-properties overlay sha1 md5 base64 format env code-pages > > mule custom widget hashtable-print-readable backquote threads kqueue > > cocoa ns lcms2 multi-tty make-network-process emacs) > > > > Memory information: > > ((conses 16 217410 17812) > > (symbols 48 22121 1) > > (strings 32 80449 5421) > > (string-bytes 1 2659099) > > (vectors 16 40607) > > (vector-slots 8 454675 43035) > > (floats 8 276 108) > > (intervals 56 1253 0) > > (buffers 992 19)) > > > > Sent with Proton Mail secure email. > > > -- > Ihor Radchenko // yantar92, > Org mode contributor, > Learn more about Org mode at https://orgmode.org/. > > Support Org development at https://liberapay.com/org-mode, > > or support my work at https://liberapay.com/yantar92 ^ permalink raw reply [flat|nested] 3+ messages in thread
* bug#58678: 28.2; :session in org-babel for python unexpected output 2022-10-24 14:51 ` Sergey @ 2022-10-25 6:15 ` Ihor Radchenko 0 siblings, 0 replies; 3+ messages in thread From: Ihor Radchenko @ 2022-10-25 6:15 UTC (permalink / raw) To: Sergey; +Cc: 58678 Sergey <srg.koshelev@proton.me> writes: > I have traced this to org-bable issue with MacOS python readline and native completion. Similar issues discussed in > https://github.com/jorgenschaefer/elpy/issues/887 > and > https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25753 > > The solution proposed in those threads, i.e., installing python from homebrew, which has gnureadline, helps for emacs 27 but causes freezing in emacs 28 after displaying following message: > ``` > Warning (python): Your ‘python-shell-interpreter’ doesn’t seem to support readline, yet ‘python-shell-completion-native-enable’ was t and "python3" is not part of the ‘python-shell-completion-native-disabled-interpreters’ list. Native completions have been disabled locally. > ``` > > Setting ~python-shell-completion-native-enable~ to nil removes the warning but doesn't prevent freezing. This behaviour persists with minimal org setup as well (although, I believe my emacs comes with org pre-packaged). So, it looks like Emacs bug then. Let us see what Emacs devs can suggest. -- Ihor Radchenko // yantar92, Org mode contributor, Learn more about Org mode at <https://orgmode.org/>. Support Org development at <https://liberapay.com/org-mode>, or support my work at <https://liberapay.com/yantar92> ^ permalink raw reply [flat|nested] 3+ messages in thread
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[not found] <sxVuW0P3PBf84mwSgshzKajuil02oBV-lIw__yCB2BDbvus8N_37EimD2kYN7CMnjon6jfcrP9ohOeyksI4T5FRRCgWTNOY7UILTV9qcXpc=@proton.me>
2022-10-22 5:58 ` bug#58678: 28.2; :session in org-babel for python unexpected output Ihor Radchenko
2022-10-24 14:51 ` Sergey
2022-10-25 6:15 ` Ihor Radchenko
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