From: "Julian M. Burgos" <julian@hafro.is>
To: "Julian M. Burgos" <julian@hafro.is>
Cc: emacs-orgmode@gnu.org, John Kitchin <jkitchin@andrew.cmu.edu>
Subject: Re: org-ref "no key found"
Date: Mon, 08 Sep 2014 10:17:00 +0100 [thread overview]
Message-ID: <xgzvboyo4j7.fsf@hafgrima.hafro.is> (raw)
In-Reply-To: <xgzha0t62q1.fsf@hafro.is>
[-- Attachment #1: Type: text/plain, Size: 2732 bytes --]
Hi John,
I think I can replicate the org-ref bug now (if it is a bug). This is the situation:
a) If I open emacs, load a file that already has some link, and click on
the link (or place the cursor on it and press enter) I get the "no key
found" message and I cannot open the notes file (I get a "Wrong type
argument: stringp, nil"), although the link to the pdf file works. If I open more
than one file, links do not work in any of them. At this point if I
check the value of the "org-ref-default-bibliography" variable, I get
the correct path and filename of my .bib file.
b) If I insert a new citation (using Ctrl-]) in any of the documents,
links work as they should in all documents (this is, I get the title and
I can open the notes file).
I should say that I am not using the org-ref-insert-bibliography-link
function, because I use biblatex and I prefer to insert the Latex
\printbibliography command. But if use it and insert the bibliography
link, the behaviour does not change.
This is what I have in my .emacs file that is related to RefTex and org-ref:
--------------------------------------------------------------------------------------
;; Load RefTex
(add-hook 'LaTeX-mode-hook 'turn-on-reftex) ; with AUCTeX LaTeX mode
(autoload 'reftex-mode "reftex" "RefTeX Minor Mode" t)
(autoload 'turn-on-reftex "reftex" "RefTeX Minor Mode" nil)
(autoload 'reftex-citation "reftex-cite" "Make citation" nil)
(autoload 'reftex-index-phrase-mode "reftex-index" "Phrase mode" t)
(add-hook 'LaTeX-mode-hook 'turn-on-reftex) ; with AUCTeX LaTeX mode
(add-hook 'latex-mode-hook 'turn-on-reftex) ; with Emacs latex mode
;; Make RefTeX faster
(setq reftex-enable-partial-scans t)
(setq reftex-save-parse-info t)
(setq reftex-use-multiple-selection-buffers t)
(setq reftex-plug-into-AUCTeX t)
(setq reftex-default-bibliography '("/home/julian/Documents/Refs/BibTex/references.bib"))
(setq reftex-sort-bibtex-matches "author") ; Sort entries found in BibTex database
(setq bibtex-dialect "biblatex")
--------------------------------------------------------------------------------------
(require 'org-ref)
(setq org-ref-bibliography-notes "/home/julian/Documents/org files/notes.org"
org-ref-default-bibliography '("/home/julian/Documents/Refs/BibTex/references.bib")
org-ref-pdf-directory "/home/julian/Documents/Refs/")
(setq org-ref-default-citation-link "parencite")
--------------------------------------------------------------------------------------
I am sending you very simple .org and .bib files that (in my computer)
reproduce this behaviour. In this file I did use
org-ref-insert-bibliography-link. Let me know if I can give you any other information.
All the best,
Julian
[-- Attachment #2: trial.bib --]
[-- Type: application/octet-stream, Size: 1094 bytes --]
@Article{Brown2011a,
Title = {Quantitative approaches in climate change ecology},
Author = {Brown, C.J. and Schoeman, D.S. and Sydeman, W.J. and Brander, K. and Buckley, L.B. and Burrows, M. and Duarte, C.M. and Moore, P.J. and Pandolfi, J.M. and Poloczanska, E. and others},
Journaltitle = {Global Change Biology},
Year = {2011},
Crossref = {burnhm},
File = {:Brown2011a.pdf:PDF},
Publisher = {Wiley Online Library}
}
@Article{Hobbs2006,
Title = {Alternatives to statistical hypothesis testing in ecology: a guide to self teaching},
Author = {Hobbs, N.T. and Hilborn, R.},
Journaltitle = {Ecological Applications},
Year = {2006},
Number = {1},
Pages = {5--19},
Volume = {16},
Crossref = {Quick2010},
File = {:Hobbs2006.pdf:PDF},
Publisher = {Eco Soc America}
}
[-- Attachment #3: trial.org --]
[-- Type: application/vnd.lotus-organizer, Size: 91 bytes --]
[-- Attachment #4: Type: text/plain, Size: 1931 bytes --]
Julian M. Burgos writes:
> John, for some weird reason everything seems to be working now. Thanks
> for your help... I will let you know if I break it again.
>
> John Kitchin writes:
>
>> that is odd. this means org-ref is not finding the key you clicked
>> on. could you send me a small example that reproduces your problem (an
>> org-file and the bib file)?
>>
>> "Julian M. Burgos" <julian@hafro.is> writes:
>>
>>> Hi John,
>>>
>>> No, they still do not work even after I click on the bibliography link
>>> and get my .bib file opened.
>>>
>>> Julian
>>>
>>> John Kitchin writes:
>>>
>>>> "Julian M. Burgos" <julian@hafro.is> writes:
>>>>
>>>> If you click on the bibliography link to open the file, and then go back
>>>> to your org-file, do the cite links work?
>>>>
>>>> I suspect the notes problem is related to the no key found problem.
>>>>
>>>>> Hello everyone,
>>>>>
>>>>> I am playing around with Joh Kitchin's excellent org-ref, and I am
>>>>> having a few issues. In my .emacs file I have set up the values for the
>>>>> org-ref-bibliography-notes, org-ref-default-bibliography, and
>>>>> org-ref-pdf-directory.
>>>>>
>>>>> With this I can access my .bib database and use org-ref-insert-cite link
>>>>> to add a citation link with no problems. But when I press enter on the
>>>>> cite link, I get the following message:
>>>>>
>>>>> no key found
>>>>> (No key found) (p)df (u)rl (n)otes (q) quit
>>>>>
>>>>> If I press "p" I get the pdf file, but if I press "n" I get the
>>>>> following message:
>>>>>
>>>>> "Wrong type argument: stringp, nil".
>>>>>
>>>>> Any ideas how to solve this?
>>>>>
>>>>> Many thanks,
>>>>>
>>>>> Julian
--
Julian Mariano Burgos, PhD
Hafrannsóknastofnun/Marine Research Institute
Skúlagata 4, 121 Reykjavík, Iceland
Sími/Telephone : +354-5752037
Bréfsími/Telefax: +354-5752001
Netfang/Email: julian@hafro.is
next prev parent reply other threads:[~2014-09-08 10:16 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-08-29 14:54 org-ref "no key found" Julian M. Burgos
2014-08-29 18:58 ` John Kitchin
2014-08-29 18:23 ` Julian M. Burgos
2014-08-30 12:58 ` John Kitchin
2014-08-30 22:18 ` Julian M. Burgos
2014-09-08 9:17 ` Julian M. Burgos [this message]
2014-09-12 11:08 ` Julian M. Burgos
2014-09-13 16:18 ` John Kitchin
2014-09-15 9:16 ` Julian M. Burgos
2014-09-15 10:17 ` Julian M. Burgos
2014-09-16 2:49 ` John Kitchin
2014-09-16 9:42 ` Julian M. Burgos
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