[fn:test] becomes [1] in the first, and [2] in the continuation headers, but [2] links to the content of [fn:test2], which becomes a reference without target. Emacs : GNU Emacs 24.5.1 (x86_64-unknown-linux-gnu, GTK+ Version 3.10.8) of 2015-04-13 on pc130799.gl.ad.germanlloyd.org Package: Org-mode version 8.3.4 (8.3.4-31-gcb683e-elpa @ /home/berhol/.emacs.d/elpa/org-20160404/) current state: ============== (setq org-src-lang-modes '(("ipython" . python) ("ocaml" . tuareg) ("elisp" . emacs-lisp) ("ditaa" . artist) ("asymptote" . asy) ("dot" . fundamental) ("sqlite" . sql) ("calc" . fundamental) ("C" . c) ("cpp" . c++) ("C++" . c++) ("screen" . shell-script) ("shell" . sh) ("bash" . sh)) org-journal-mode-hook '(#[nil "\301\302\303\304$\207" [org-journal-encrypt-on org-add-hook org-journal-encryption-hook nil t] 5] (lambda nil (org-add-hook org-journal-encrypt-on (quote org-journal-encryption-hook) nil t) ) ) org-tab-first-hook '(org-hide-block-toggle-maybe org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) outline-minor-mode-hook '(outshine-hook-function) org-latex-classes '(("dnvglartcl" "\\documentclass[paper=a4,%\ntwoside,%\n10pt,%\nheadings=small,footinclude=false,%\nheadinclude,%\nheadlines,%\nBCOR12mm,%\nDIV14,%\ncolhead]{dnvglartcl}\n[EXTRA]" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . "\\subparagraph*{%s}")) ("article" "\\documentclass[11pt]{article}" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . "\\subparagraph*{%s}")) ("report" "\\documentclass[11pt]{report}" ("\\part{%s}" . "\\part*{%s}") ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")) ("book" "\\documentclass[11pt]{book}" ("\\part{%s}" . "\\part*{%s}") ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}")) ) org-latex-default-packages-alist '(("" "fixltx2e" nil) ("" "graphicx" t) ("" "longtable" nil) ("" "float" nil) ("" "wrapfig" nil) ("" "rotating" nil) ("normalem" "ulem" t) ("" "amsmath" t) ("" "textcomp" t) ("" "marvosym" t) ("" "wasysym" t) ("" "amssymb" t) ("" "hyperref" nil) ("" "booktabs" t) "\\tolerance=1000") org-pre-cycle-hook '(org-fstree-show-entry-maybe) org-speed-command-hook '(org-speed-command-default-hook org-babel-speed-command-hook) org-occur-hook '(org-first-headline-recenter) org-metaup-hook '(org-babel-load-in-session-maybe) org-html-format-drawer-function '(lambda (name contents) contents) org-log-done t org-latex-format-inlinetask-function 'org-latex-format-inlinetask-default-function org-confirm-shell-link-function 'yes-or-no-p org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default org-link-translation-function 'toc-org-unhrefify org-latex-pdf-process '("latexmk -C -latex=xelatex -bibtex-cond -f %f" "latexmk -latex=xelatex -bibtex-cond -f %f") org-latex-format-headline-function 'org-latex-format-headline-default-function org-after-todo-state-change-hook '(org-clock-out-if-current) org-latex-format-drawer-function '(lambda (name contents) contents) org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) org-agenda-before-write-hook '(org-agenda-add-entry-text) org-babel-pre-tangle-hook '(save-buffer) org-mode-hook '(flyspell-mode toc-org-enable org-autolist-mode #[nil "\300\301\302\303\304$\207" [org-add-hook change-major-mode-hook org-show-block-all append local] 5] #[nil "\300\301\302\303\304$\207" [org-add-hook change-major-mode-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spec org-babel-hide-all-hashes emoji-cheat-sheet-plus-display-mode org-journal-update-auto-mode-alist org-bullets-mode whitespace-cleanup-mode) org-archive-hook '(org-attach-archive-delete-maybe) org-ascii-format-drawer-function '(lambda (name contents width) contents) org-ctrl-c-ctrl-c-hook '(org-fstree-apply-maybe org-babel-hash-at-point org-babel-execute-safely-maybe) org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers org-cycle-show-empty-lines org-optimize-window-after-visibility-change) org-linkany/browse-function 'browse-url-firefox org-export-before-processing-hook '(org-impress-js-begin) org-babel-tangle-lang-exts '(("python" . "py") ("perl" . "pl") ("maxima" . "max") ("lisp" . "lisp") ("latex" . "tex") ("java" . "java") ("fortran" . "F90") ("awk" . "awk") ("asymptote" . "asy") ("D" . "d") ("C++" . "cpp") ("emacs-lisp" . "el") ("elisp" . "el")) org-confirm-elisp-link-function 'yes-or-no-p org-metadown-hook '(org-babel-pop-to-session-maybe) outline-mode-hook '(flyspell-mode) org-babel-after-execute-hook '(org-display-inline-images) org-latex-listings t org-html-format-headline-function 'org-html-format-headline-default-function org-babel-load-languages '((C . t) (R . t) (asymptote . t) (awk . t) (calc) (clojure) (comint . t) (css . t) (ditaa . t) (dot . t) (emacs-lisp . t) (fortran . t) (gnuplot . t) (haskell) (io) (java . t) (js . t) (latex . t) (ledger) (lilypond) (lisp . t) (matlab . t) (maxima . t) (mscgen) (ocaml) (octave . t) (org . t) (perl . t) (picolisp) (plantuml) (python . t) (ref . t) (ruby) (sass) (scala) (scheme) (screen) (sh . t) (shen) (sql . t) (sqlite . t)) org-reveal-start-hook '(org-decrypt-entry) org-html-format-inlinetask-function 'org-html-format-inlinetask-default-function org-agenda-mode-hook '(desktop+--org-agenda-mode-hook) org-agenda-files '("~/note.org") org-clock-out-hook '(org-clock-remove-empty-clock-drawer) org-confirm-babel-evaluate nil ) -- Best regards for DNV GL SE Berthold Höllmann -- Development Eng. - Structural Methods, Information Management Research & Development, Hamburg E-mail berthold.hoellmann@dnvgl.com Direct +49 40 36149 7374 www.dnvgl.com | www.linkedin.com/company/dnvgl DNV GL DNV and GL have merged to form DNV GL We are now the world's largest ship and offshore classification society, the leading technical advisor to the global oil and gas industry, and a leading expert for the energy value chain including renewables and energy efficiency. We've also taken a position as one of the top three certification bodies in the world. Read more here: www.dnvgl.com/merger.