Re: Make * bold or use colour for export to html and LaTeX

[Rainer M Krug <Rainer@krugs.de>]

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Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:

> Hi Rainer,
>
> Rainer M Krug <Rainer@krugs.de> writes:
>> Hi
>>
>> I want to highlight the cells in the table below with "***" by using
>> color red for the font, "**' by using green for the font, ... or, if not possible, bold. Is any of this possible?
>>
>> The table is generated in R, so the ascii package might help (just
>> thinking about it while typing)?
>>
>> Thanks,
>>
>> Rainer 
>>
>> |                            |  slope | intercept | p             |           pm |            pb |
>> |----------------------------+--------+-----------+---------------+--------------+---------------|
>> | quercus_robur.single       | -1.358 |      4.76 |               |              |               |
>> | quercus_robur.95           | -1.957 |      5.71 | 3.96e-21 ***   | 7.47e-07 *** |  7.60e-09 *** |
>> | quercus_robur.90           | -1.752 |      5.42 | 3.43e-02 *    |   7.18e-02 . |    4.79e-02 * |
>> | quercus_robur.85           | -1.773 |      5.41 | 4.11e-01      |     8.33e-01 |      9.38e-
>
>
> I am not sure to understand your question correctly, but if the table is
> R generated anyway, why not use R to provide the formatting for org?

You do - bold or in colour. 

>
>
> Like -- as a start -- this function, that does the simplest of those and
> replaces "***" with bold:

This looks very promising, but I would also like to keep the stars, so I
would like to have "3.96e-21 ***" in bold (or even in color`). But I am
going to start with your example.

Thanks,

Rainer
 

>
> boldpattern <- " \\*\\*\\*$"
> tbl <- apply(tbl, 2,
>              function(x) ifelse(grepl(boldpattern, x),
>                                 paste0("*", gsub(boldpattern, "", x), "*"),
>                                 x))
>
>
> Here as full example in action:
>
> ## ---------------------------------- ##
> ## create a table                     ##
> ## ---------------------------------- ##
>
> ## from ?lm
> ctl <- c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14)
> trt <- c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69)
> group <- gl(2, 10, 20, labels = c("Ctl","Trt"))
> weight <- c(ctl, trt)
> lm.D9 <- lm(weight ~ group)
> lm.D90 <- lm(weight ~ group - 1) # omitting intercept
> ## extract the coefficients
> tbl <- summary(lm.D90)$coefficients
> ## add the signif codes
> tbl[,4] <- paste(tbl[,4],
>                  symnum(tbl[,4], corr = FALSE, na = FALSE, 
>                         cutpoints = c(0, 0.001, 0.01, 0.05, 0.1, 1), 
>                         symbols = c("***", "**", "*", ".", " ")))
> tbl
>
>
> ## ---------------------------------- ##
> ## make them 'org-bold'               ##
> ## ---------------------------------- ##
> boldpattern <- " \\*\\*\\*$"
> tbl <- apply(tbl, 2,
>              function(x) ifelse(grepl(boldpattern, x),
>                                 paste0("*", gsub(boldpattern, "", x), "*"),
>                                 x))
> tbl
>
>
> HTH,
> Andreas
>
> PS: The usual "don't use the signif.codes" applies.
>
>
>

-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

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