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From: "Rudolf Adamkovič via General discussions about Org-mode." <emacs-orgmode@gnu.org>
To: "Berry, Charles" <ccberry@health.ucsd.edu>
Cc: Kyle Meyer <kyle@kyleam.com>,
	"52545@debbugs.gnu.org" <52545@debbugs.gnu.org>,
	Ihor Radchenko <yantar92@gmail.com>
Subject: bug#52545: 29.0.50; Make org-babel-execute-buffer ignore irrelevant src blocks
Date: Thu, 30 Dec 2021 09:00:00 +0100	[thread overview]
Message-ID: <m2lf027can.fsf@me.com> (raw)
In-Reply-To: <m2o84y7dux.fsf@me.com>

Rudolf Adamkovič via "General discussions about Org-mode."
<emacs-orgmode@gnu.org> writes:

> Below, I include a typical use case: Org notes about an article with a
> corresponding BibTeX entry.

Please, ignore the example I gave, as it does not show anything.  I
apologize it.  Below, I provide a good example, one that made me stumble
upon the problem.

I have a paper that includes BibTeX blocks for references and SQLite
blocks to compute results.  I expect Org to execute all SQLite without
aborting to inform me that it could not execute BibTeX. Further, I
expect Org to it without me instructing it, for executing BibTeX does
not make sense.

#+title: …
#+author: Rudolf Adamkovič
#+email: salutis@me.com
#+property: header-args+ :comments link
#+cite_export: csl apa.csl
#+property: header-args:bibtex+ :exports none
#+property: header-args:bibtex+ :eval yes
#+options: toc:nil
#+latex_header: \usepackage{setspace}
#+latex_header: \doublespacing

* Abstract […]

* Introduction

[…] [cite/text:@beall-2019] explains […]

#+begin_src bibtex :tangle ~/bib/beall-2019.bib
[…]
#+end_src

[… 10 more BibTeX blocks used for the literature review]

* Methods […]

* Results

[…]

#+begin_src sqlite :db ~/tmp/test.db :exports none
[…]
#+end_src

[… 10 more SQLite blocks used to compute the results …]

[…]

Rudy
-- 
"'Contrariwise,' continued Tweedledee, 'if it was so, it might be; and
if it were so, it would be; but as it isn't, it ain't. That's logic.'"
-- Lewis Carroll, Through the Looking Glass

Rudolf Adamkovič <salutis@me.com> [he/him]
Studenohorská 25
84103 Bratislava
Slovakia




  reply	other threads:[~2021-12-30  8:02 UTC|newest]

Thread overview: 32+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
     [not found] <m2h7b8u9a7.fsf@me.com>
2021-12-17  4:51 ` bug#52545: 29.0.50; Make org-babel-execute-buffer ignore irrelevant src blocks Kyle Meyer
2021-12-17 19:25   ` Berry, Charles
2021-12-18  9:49     ` Ihor Radchenko
2021-12-18 19:57       ` Berry, Charles
2021-12-18 20:13         ` Berry, Charles
2021-12-21 22:53       ` Rudolf Adamkovič via General discussions about Org-mode.
2021-12-21 23:14         ` Berry, Charles
2021-12-22 15:04         ` Ihor Radchenko
2021-12-23 22:00           ` Rudolf Adamkovič via General discussions about Org-mode.
2021-12-24  4:09             ` Ihor Radchenko
2021-12-24 19:52               ` Berry, Charles
2021-12-25 21:37                 ` Rudolf Adamkovič via General discussions about Org-mode.
2021-12-25 23:34                   ` Berry, Charles
2021-12-30  7:26                     ` Rudolf Adamkovič via General discussions about Org-mode.
2021-12-30  8:00                       ` Rudolf Adamkovič via General discussions about Org-mode. [this message]
2021-12-31 12:05                         ` Max Nikulin
2021-12-31 19:11                           ` Berry, Charles
2022-01-01 20:32                             ` Rudolf Adamkovič via General discussions about Org-mode.
2022-01-01 20:23                           ` Rudolf Adamkovič via General discussions about Org-mode.
2021-12-30 20:14                       ` Berry, Charles
2021-12-29 12:53                 ` Max Nikulin
2021-12-29 17:47                   ` Berry, Charles
2021-12-30 15:41                     ` Max Nikulin
2021-12-25 21:40               ` Rudolf Adamkovič via General discussions about Org-mode.
2021-12-26 12:49             ` Max Nikulin
2021-12-26 13:27               ` Ihor Radchenko
2022-01-04 14:59                 ` Max Nikulin
2021-12-26 19:51               ` Rudolf Adamkovič
2021-12-27 11:18                 ` Max Nikulin
2021-12-27 21:37                   ` Rudolf Adamkovič via General discussions about Org-mode.
2021-12-28 11:45                     ` Max Nikulin
2021-12-28 20:39                       ` Rudolf Adamkovič via General discussions about Org-mode.

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