From mboxrd@z Thu Jan 1 00:00:00 1970 From: John Kitchin Subject: Re: Mouse-over on bibliographic citation Date: Thu, 22 Jun 2017 08:14:38 -0400 Message-ID: References: <877f05104s.fsf@skimble.plus.com> <87mv90fhyh.fsf@skimble.plus.com> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:38761) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1dO10W-0008OP-Mm for emacs-orgmode@gnu.org; Thu, 22 Jun 2017 08:14:46 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1dO10T-0004lu-Ek for emacs-orgmode@gnu.org; Thu, 22 Jun 2017 08:14:44 -0400 Received: from mail-qk0-x231.google.com ([2607:f8b0:400d:c09::231]:34438) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1dO10T-0004ld-9c for emacs-orgmode@gnu.org; Thu, 22 Jun 2017 08:14:41 -0400 Received: by mail-qk0-x231.google.com with SMTP id d14so10134008qkb.1 for ; Thu, 22 Jun 2017 05:14:41 -0700 (PDT) In-reply-to: <87mv90fhyh.fsf@skimble.plus.com> List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: "Emacs-orgmode" To: Sharon Kimble Cc: org-mode-email Can you add this to your org-file, run it and tell me what the output is: #+BEGIN_SRC emacs-lisp (org-ref-find-bibliography) #+END_SRC Also run M-x org-ref to see what bibliography org-ref thinks it is using in that file. There were some recent changes to (org-ref-find-bibliography) that might be causing this problem. Do you have a bibliography link in the file you are working in? Sharon Kimble writes: > John Kitchin writes: > >> this is a bug in the current org-mode 9.0.8. You have to revert it to org 9.0.7 for now. It has been fixed, but I am not sure when it will show up. > > Thanks for this John. > > I can confirm that with today's release of 'org-mode plus contribs' the > desired over effect has returned, but with a caveat - its showing the > wrong bibliographic entry! I have this in my config file - > > --8<---------------cut here---------------start------------->8--- > #+begin_src emacs-lisp > (require 'org-ref) > (setq reftex-default-bibliography '("~/research/death/death.bib")) > > ;; see org-ref for use of these variables > (setq org-ref-bibliography-notes "~/research/notes.org" > org-ref-default-bibliography '("~/research/death/death.bib") > org-ref-pdf-directory "~/research/death/pdfs") > > (setq bibtex-completion-bibliography "~/research/death/death.bib" > bibtex-completion-library-path "~/research/death/pdfs" > bibtex-completion-notes-path "~/research/death/helm-bibtex-notes") > #+end_src > [2016-09-20 Tue 04:15] > [2017-01-17 Tue 11:34] > --8<---------------cut here---------------end--------------->8--- > > Going back to '(cite:0072)' the mouse-over now shows 'NHS, , /Ovarian > cancer/ (2015).', which is the reference in 'death.bib'! > > I'm using the exact same code-block as pre-the updated org-mode, and > I've restarted emacs, so I'm not sure what ought to be changed, if > anything, but I'm unhappy with what its now showing as its not correct. > > Do I need to revamp my code-block, and if so, how please? > > Thanks > Sharon. > >> >> On Wed, Jun 21, 2017 at 5:50 PM, Sharon Kimble wrote: >> >> I've got this strange problem and I'm not sure when it started, possibly >> when this new computer was first put to use last Friday afternoon with a >> fresh install of Debian 9, or maybe before then, I'm not sure. >> >> Anyway, whenever I mouse-over a bibliographic citation in an org-mode >> document, it used to say for (cite:0072) '\Hair loss, 2015, >> http://www.regrowth.com/hair-loss-articles/ \' but now just shows >> 'LINK:cite:0072'. >> >> I am using 'org-ref' which is up to date, as is org-mode, and both from >> ELPA. >> >> This is what my bibliography item actually is - >> >> --8<---------------cut here---------------start------------->8--- >> @Online{0072, >> Title = {Hair loss}, >> Author = {regrowth}, >> Url = {http://www.regrowth.com/hair-loss-articles/}, >> Year = {2015} >> } >> --8<---------------cut here---------------end--------------->8--- >> >> So how can I regain my previous mouse-over abilities please? >> >> Thanks >> Sharon. >> -- >> A taste of linux = http://www.sharons.org.uk >> TGmeds = http://www.tgmeds.org.uk >> DrugFacts = https://www.drugfacts.org.uk >> Debian 9.0, fluxbox 1.3.5-2, emacs 25.1.1, org-mode 9.0.7 >> -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu