From mboxrd@z Thu Jan 1 00:00:00 1970 From: tsd@tsdye.com (Thomas S. Dye) Subject: Re: Rsquared for reproductible research Date: Thu, 12 Jan 2012 08:24:38 -1000 Message-ID: References: <87k44wsx47.fsf@gmx.com> Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([140.186.70.92]:58261) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1RlPKR-0002f4-LX for emacs-orgmode@gnu.org; Thu, 12 Jan 2012 13:24:53 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1RlPKP-0003zG-LU for emacs-orgmode@gnu.org; Thu, 12 Jan 2012 13:24:47 -0500 Received: from oproxy8-pub.bluehost.com ([69.89.22.20]:53795) by eggs.gnu.org with smtp (Exim 4.71) (envelope-from ) id 1RlPKP-0003yj-BL for emacs-orgmode@gnu.org; Thu, 12 Jan 2012 13:24:45 -0500 In-Reply-To: <87k44wsx47.fsf@gmx.com> (Eric Schulte's message of "Thu, 12 Jan 2012 09:29:12 -0700") List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Eric Schulte Cc: emacs-orgmode@gnu.org, Stephen Eglen Eric Schulte writes: > Stephen Eglen writes: > >>> I recognized your name, Stephen, as the long-time maintainer of the "Em= acs >>> Lisp List"--thanks for that too. =C2=A0 >>> Are you envisioning a repository beyond "Emacs Lisp List" for OrgMode >>> implementations and/or Babel examples. >> >> I am interested in maintaining a collection of nice org-babel-R >> examples, given my interest in R and Emacs; I made a small start last >> year for my tutorial notes on ESS for the useR meeting, but I'd like to >> update that. The key problem I found with learning org-babel was worked >> examples, given that the syntax was changing rapidly. I hope that has >> now stabilised, and I should followup with Eric about this. >> > > The syntax is now stabilized (we wanted to get this sorted before the > final Emacs24 merge). That which is currently described in the manual > is and should remain the proper Org-mode code block syntax. > > For many small examples, please see [1] which I (unfortunately) haven't > been adding to recently, but I will try to once again start using for > all of my small generally-mailing-list-inspired Babel one-offs. > >> >> (I also hope to kill off the Emacs Lisp List once the ELPA has taken >> off.) >> >>> Also, I very much agree that a "near exact replica" of the=C2=A0http:// >>> rsquared.stat.uni-muenchen.de/index.rhtml for OrgMode would be great. >> Yes! Any takers?!? >> > > From looking at the fairly terse web site for R^2 it is not clear to me > exactly what the system includes (I'm sure I'm missing something > obvious). It seems to be the addition of a packaging system over-top of > R source files. What would a potential Org-mode based system provide > which is not already possible with Org-mode text files, Org-mode > publishing and a version control repository. One thing that caught my eye was the facility that compared results across operating systems. Tom > > Perhaps the benefit would simply be a system which eases the integration > of Org, publishing, version control, and possibly automatic Makefile > creation with tasks like "publish", "clean" etc... > > Best, > >> >>> http://cran.r-project.org/web/packages/roxygen/index.html >> >> Note that ESS has limited support for editing roxygen tags. >> >> Stephen >> >> > > > Footnotes:=20 > [1] http://eschulte.me/org-scraps/ --=20 Thomas S. Dye http://www.tsdye.com