[PATCH]: Add header-args property to source block info

[PATCH]: Add header-args property to source block info

[Rainer M Krug]

[-- Attachment #1.1: Type: text/plain, Size: 1971 bytes --]

Hi

Following a recent discussion (based on me forgetting a ":" when setting
the property :header-args), I added the output of the property
header-args to the output of org-babel-get-src-block-info to make
debugging easier. Before the function resulted in the following output
(using my faulty code block):

,----
| Lang: R
| Header Arguments:
| 	:cache		no
| 	:exports	both
| 	:hlines		no
| 	:noweb		no
| 	:results	code exports output replace
| 	:session	somename
| 	:tangle		no
| 
`----

One only saw that the property :results was not correct but not where it
came from.

Using the patched version, one gets the following:

,----
| Lang: R
| Properties:
| 	:header-args 	:exports both :results output exports code
| 	:header-args:R 	:session somename
| Header Arguments:
| 	:cache		no
| 	:exports	both
| 	:hlines		no
| 	:noweb		no
| 	:results	code exports output replace
| 	:session	somename
| 	:tangle		no
`----

Here one can clearly see that the property :header-args is not set
correctly and can easily trace it down in the original org file.

Also, actually seeing the property :header-args makes it easier to
understand the whole inheritance of header arguments and how header-args
and header-args+ interact. 

The same applir=es to the property :header-args:R (or any language
specific header-args:language property)

Cheers,

Rainer


Here is again the faulty org file which lead to the patch:

--8<---------------cut here---------------start------------->8---
#+PROPERTY: header-args:R :session somename
#+PROPERTY: header-args :exports both
#+PROPERTY: header-args+ :results output
* The bug
This file create an (possibly endless?) loop during export
* here exports both
#+begin_src R 
cat(13+14)
#+end_src

* and here only code
:PROPERTIES:
:header-args+: exports code
:END:
#+begin_src R 
paste(13+14)
#+end_src
--8<---------------cut here---------------end--------------->8---


[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #1.2: Add :header-args to output --]
[-- Type: text/x-patch, Size: 759 bytes --]

diff --git a/lisp/ob-core.el b/lisp/ob-core.el
index ceda1aa..94a07f6 100644
--- a/lisp/ob-core.el
+++ b/lisp/ob-core.el
@@ -409,6 +409,10 @@ a window into the `org-babel-get-src-block-info' function."
 	      (header-args (nth 2 info)))
 	  (when name            (funcall printf "Name: %s\n"     name))
 	  (when lang            (funcall printf "Lang: %s\n"     lang))
+	  (funcall printf "Properties:\n")
+	  (funcall printf "\t:header-args \t%s\n" (org-entry-get (point) "header-args" t))
+	  (funcall printf "\t:header-args:%s \t%s\n" lang (org-entry-get (point) (concat "header-args:" lang) t))
+
 	  (when (funcall full switches) (funcall printf "Switches: %s\n" switches))
 	  (funcall printf "Header Arguments:\n")
 	  (dolist (pair (sort header-args

[-- Attachment #1.3: Type: text/plain, Size: 71 bytes --]


-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Rainer M Krug]

[-- Attachment #1.1: Type: text/plain, Size: 162 bytes --]

Please find attached the below described patch including the fix for the
error reported - function raises error when property value is numeric.

Cheers,

Rainer


[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #1.2: Bugfix and added header-args --]
[-- Type: text/x-patch, Size: 1066 bytes --]

diff --git a/lisp/ob-core.el b/lisp/ob-core.el
index ceda1aa..aa39c11 100644
--- a/lisp/ob-core.el
+++ b/lisp/ob-core.el
@@ -409,12 +409,16 @@ a window into the `org-babel-get-src-block-info' function."
 	      (header-args (nth 2 info)))
 	  (when name            (funcall printf "Name: %s\n"     name))
 	  (when lang            (funcall printf "Lang: %s\n"     lang))
+	  (funcall printf "Properties:\n")
+	  (funcall printf "\t:header-args \t%s\n" (org-entry-get (point) "header-args" t))
+	  (funcall printf "\t:header-args:%s \t%s\n" lang (org-entry-get (point) (concat "header-args:" lang) t))
+
 	  (when (funcall full switches) (funcall printf "Switches: %s\n" switches))
 	  (funcall printf "Header Arguments:\n")
 	  (dolist (pair (sort header-args
 			      (lambda (a b) (string< (symbol-name (car a))
 						     (symbol-name (car b))))))
-	    (when (funcall full (cdr pair))
+	    (when (funcall full (format "%s" (cdr pair)))
 	      (funcall printf "\t%S%s\t%s\n"
 		       (car pair)
 		       (if (> (length (format "%S" (car pair))) 7) "" "\t")

[-- Attachment #1.3: Type: text/plain, Size: 2893 bytes --]



Rainer M Krug <Rainer@krugs.de> writes:

> Hi
>
> Following a recent discussion (based on me forgetting a ":" when setting
> the property :header-args), I added the output of the property
> header-args to the output of org-babel-get-src-block-info to make
> debugging easier. Before the function resulted in the following output
> (using my faulty code block):
>
> ,----
> | Lang: R
> | Header Arguments:
> | 	:cache		no
> | 	:exports	both
> | 	:hlines		no
> | 	:noweb		no
> | 	:results	code exports output replace
> | 	:session	somename
> | 	:tangle		no
> | 
> `----
>
> One only saw that the property :results was not correct but not where it
> came from.
>
> Using the patched version, one gets the following:
>
> ,----
> | Lang: R
> | Properties:
> | 	:header-args 	:exports both :results output exports code
> | 	:header-args:R 	:session somename
> | Header Arguments:
> | 	:cache		no
> | 	:exports	both
> | 	:hlines		no
> | 	:noweb		no
> | 	:results	code exports output replace
> | 	:session	somename
> | 	:tangle		no
> `----
>
> Here one can clearly see that the property :header-args is not set
> correctly and can easily trace it down in the original org file.
>
> Also, actually seeing the property :header-args makes it easier to
> understand the whole inheritance of header arguments and how header-args
> and header-args+ interact. 
>
> The same applir=es to the property :header-args:R (or any language
> specific header-args:language property)
>
> Cheers,
>
> Rainer
>
>
> Here is again the faulty org file which lead to the patch:
>
> #+PROPERTY: header-args:R :session somename
> #+PROPERTY: header-args :exports both
> #+PROPERTY: header-args+ :results output
> * The bug
> This file create an (possibly endless?) loop during export
> * here exports both
> #+begin_src R 
> cat(13+14)
> #+end_src
>
> * and here only code
> :PROPERTIES:
> :header-args+: exports code
> :END:
> #+begin_src R 
> paste(13+14)
> #+end_src
> diff --git a/lisp/ob-core.el b/lisp/ob-core.el
> index ceda1aa..94a07f6 100644
> --- a/lisp/ob-core.el
> +++ b/lisp/ob-core.el
> @@ -409,6 +409,10 @@ a window into the `org-babel-get-src-block-info' function."
>  	      (header-args (nth 2 info)))
>  	  (when name            (funcall printf "Name: %s\n"     name))
>  	  (when lang            (funcall printf "Lang: %s\n"     lang))
> +	  (funcall printf "Properties:\n")
> +	  (funcall printf "\t:header-args \t%s\n" (org-entry-get (point) "header-args" t))
> +	  (funcall printf "\t:header-args:%s \t%s\n" lang (org-entry-get (point) (concat "header-args:" lang) t))
> +
>  	  (when (funcall full switches) (funcall printf "Switches: %s\n" switches))
>  	  (funcall printf "Header Arguments:\n")
>  	  (dolist (pair (sort header-args

-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]

Re: [PATCH]: Add header-args property to source block info

[Charles C. Berry]

On Tue, 10 Feb 2015, Rainer M Krug wrote:

> Hi
>
> Following a recent discussion (based on me forgetting a ":" when setting
> the property :header-args), I added the output of the property
> header-args to the output of org-babel-get-src-block-info to make
> debugging easier.
[snip]
>
> Using the patched version, one gets the following:
>
> ,----
> | Lang: R
> | Properties:
> | 	:header-args 	:exports both :results output exports code
> | 	:header-args:R 	:session somename
> | Header Arguments:
> | 	:cache		no
> | 	:exports	both
> | 	:hlines		no
> | 	:noweb		no
> | 	:results	code exports output replace
> | 	:session	somename
> | 	:tangle		no
> `----
>

This is handy!

Just a thought:

Perhaps allow an `(interactive "P)' type `arg' to determine whether to 
present the properties?

i.e. C-u C-c C-v C-i reveals both Properties: and Header Arguments:, while
C-c C-v C-i just the latter.

Best,

Chuck

Re: [PATCH]: Add header-args property to source block info

[Rainer M Krug]

[-- Attachment #1: Type: text/plain, Size: 1764 bytes --]

"Charles C. Berry" <ccberry@ucsd.edu> writes:

> On Tue, 10 Feb 2015, Rainer M Krug wrote:
>
>> Hi
>>
>> Following a recent discussion (based on me forgetting a ":" when setting
>> the property :header-args), I added the output of the property
>> header-args to the output of org-babel-get-src-block-info to make
>> debugging easier.
> [snip]
>>
>> Using the patched version, one gets the following:
>>
>> ,----
>> | Lang: R
>> | Properties:
>> | 	:header-args 	:exports both :results output exports code
>> | 	:header-args:R 	:session somename
>> | Header Arguments:
>> | 	:cache		no
>> | 	:exports	both
>> | 	:hlines		no
>> | 	:noweb		no
>> | 	:results	code exports output replace
>> | 	:session	somename
>> | 	:tangle		no
>> `----
>>
>
> This is handy!
>
> Just a thought:
>
> Perhaps allow an `(interactive "P)' type `arg' to determine whether to
> present the properties?
>
> i.e. C-u C-c C-v C-i reveals both Properties: and Header Arguments:, while
> C-c C-v C-i just the latter.

Apart from having no idea how I can do this, I think it would add just
another layer of complexity which is actually not needed as this is just
an information to be assessed visually and not to be parsed by some
code - so I do not assume there are any backward compatibility issues.

Also, as the information presented is only relative small (20 lines
max?) it is still quite easy to see the original information.

If the patch would strip away information or add a huge amount of it, I
would completely agree with your suggestion, but as it stands, I see no
harm in leaving it as it is in the patch.

Cheers,

Rainer

>
> Best,
>
> Chuck
>
>

-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Nicolas Goaziou]

Hello,

Rainer M Krug <Rainer@krugs.de> writes:

> Please find attached the below described patch including the fix for the
> error reported - function raises error when property value is numeric.

Looks good. Thank you.

Could you provide an appropriate commit message? Bonus points if you
also add a test.

Regards,

-- 
Nicolas Goaziou

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Rainer M Krug]

[-- Attachment #1.1: Type: text/plain, Size: 293 bytes --]

Nicolas Goaziou <mail@nicolasgoaziou.fr> writes:

> Hello,
>
> Rainer M Krug <Rainer@krugs.de> writes:
>
>> Please find attached the below described patch including the fix for the
>> error reported - function raises error when property value is numeric.
>
> Looks good. Thank you.

Thanks.

>

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #1.2: Patch with commit message --]
[-- Type: text/x-patch, Size: 2007 bytes --]

From 6461f4de49fbcd002913a58ac5b47453e965ac0d Mon Sep 17 00:00:00 2001
From: "Rainer M. Krug" <R.M.Krug@gmail.com>
Date: Tue, 10 Feb 2015 09:32:46 +0100
Subject: [PATCH] ob-core.el: Fix numeric error and add header-args

* lisp/ob-core.el (org-babel-view-src-block-info): when a property
  value was numeric, an error was raised. Fixed by converting property
  value to string before evauation.

* lisp/ob-core.el (org-babel-view-src-block-info): Add property string
  "header args" to output of org-babel-view-src-block-info to make
  debugging of header-args setting problems easier.

* lisp/ob-core.el (org-babel-view-src-block-info): Add property string
  for language specific "header args:LANG" to output of org-babel-view-src-block-info to make
  debugging of header-args setting problems easier.
---
 lisp/ob-core.el | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/lisp/ob-core.el b/lisp/ob-core.el
index ceda1aa..aa39c11 100644
--- a/lisp/ob-core.el
+++ b/lisp/ob-core.el
@@ -409,12 +409,16 @@ a window into the `org-babel-get-src-block-info' function."
 	      (header-args (nth 2 info)))
 	  (when name            (funcall printf "Name: %s\n"     name))
 	  (when lang            (funcall printf "Lang: %s\n"     lang))
+	  (funcall printf "Properties:\n")
+	  (funcall printf "\t:header-args \t%s\n" (org-entry-get (point) "header-args" t))
+	  (funcall printf "\t:header-args:%s \t%s\n" lang (org-entry-get (point) (concat "header-args:" lang) t))
+
 	  (when (funcall full switches) (funcall printf "Switches: %s\n" switches))
 	  (funcall printf "Header Arguments:\n")
 	  (dolist (pair (sort header-args
 			      (lambda (a b) (string< (symbol-name (car a))
 						     (symbol-name (car b))))))
-	    (when (funcall full (cdr pair))
+	    (when (funcall full (format "%s" (cdr pair)))
 	      (funcall printf "\t%S%s\t%s\n"
 		       (car pair)
 		       (if (> (length (format "%S" (car pair))) 7) "" "\t")
-- 
2.3.0


[-- Attachment #1.3: Type: text/plain, Size: 343 bytes --]


> Could you provide an appropriate commit message?

Here is the patch attached with the commit message - hope it is OK.

> Bonus points if you also add a test.

Are there some guidelines on how to write tests? Never done this before...

Rainer

>
> Regards,

-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Alan Schmitt]

[-- Attachment #1: Type: text/plain, Size: 508 bytes --]

Hello,

On 2015-02-10 22:58, Rainer M Krug <Rainer@krugs.de> writes:

> Are there some guidelines on how to write tests? Never done this before...

I recently wrote my first test, so here is how I did it.

- find a similar test in testing/lisp/....el (maybe in test-ob-exp.el)
- load the file testing/org-test.el (it has many helper functions,
  I needed them when testing links)
- write and evaluate your ert-deftest
- call ert to run the test

Alan

-- 
OpenPGP Key ID : 040D0A3B4ED2E5C7

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Rainer M Krug]

[-- Attachment #1: Type: text/plain, Size: 801 bytes --]

Alan Schmitt <alan.schmitt@polytechnique.org> writes:

> Hello,
>
> On 2015-02-10 22:58, Rainer M Krug <Rainer@krugs.de> writes:
>
>> Are there some guidelines on how to write tests? Never done this before...
>
> I recently wrote my first test, so here is how I did it.
>
> - find a similar test in testing/lisp/....el (maybe in test-ob-exp.el)
> - load the file testing/org-test.el (it has many helper functions,
>   I needed them when testing links)
> - write and evaluate your ert-deftest
> - call ert to run the test
>

Thanks a lot.

I looked at them, but I think I skip the test (and the bonus-points)
this time (my limited elisp would make it quite a mission, I guess)

Cheers,

Rainer


> Alan

-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Rainer M Krug]

[-- Attachment #1: Type: text/plain, Size: 887 bytes --]


Rainer M Krug <Rainer@krugs.de> writes:

> Nicolas Goaziou <mail@nicolasgoaziou.fr> writes:
>
>> Hello,
>>
>> Rainer M Krug <Rainer@krugs.de> writes:
>>
>>> Please find attached the below described patch including the fix for the
>>> error reported - function raises error when property value is numeric.
>>
>> Looks good. Thank you.
>
> Thanks.
>
>>
>
>
>> Could you provide an appropriate commit message?
>
> Here is the patch attached with the commit message - hope it is OK.
>
>> Bonus points if you also add a test.

I think I will skip the bonus points this time - sorry.

I would be very grateful if you could submit the patch without a test.

Cheers,

Rainer

>
> Are there some guidelines on how to write tests? Never done this before...
>
> Rainer
>
>>
>> Regards,

-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Charles C. Berry]

On Thu, 12 Feb 2015, Rainer M Krug wrote:

>
> Rainer M Krug <Rainer@krugs.de> writes:
>
>> Nicolas Goaziou <mail@nicolasgoaziou.fr> writes:
>>
>>> Hello,
>>>
>>> Rainer M Krug <Rainer@krugs.de> writes:
>>>
>>>> Please find attached the below described patch including the fix for the
>>>> error reported - function raises error when property value is numeric.
>>>
>>> Looks good. Thank you.
>>
>> Thanks.
>>
>>>
>>
>>
>>> Could you provide an appropriate commit message?
>>
>> Here is the patch attached with the commit message - hope it is OK.
>>
>>> Bonus points if you also add a test.
>
> I think I will skip the bonus points this time - sorry.
>
> I would be very grateful if you could submit the patch without a test.
>
> Cheers,
>
> Rainer
>
>>
>> Are there some guidelines on how to write tests? Never done this before...

Alan's suggestions are good. To which I might add browse `testing/README'.

Try this. Evaluate these blocks:

#+BEGIN_SRC emacs-lisp :var here=(buffer-file-name)
   (add-to-list 'load-path (file-name-directory here))
   (require 'org-test)
#+END_SRC

#+BEGIN_SRC emacs-lisp
     (ert-deftest test-org-babel/view-src-block-info-for-identity ()
       "Check `(identity #o444)' in header-args property."
       (org-test-with-temp-text
           "#+PROPERTY: header-args  :tangle-mode (identity #o444)
   ,#+begin_src emacs-lisp
   (+ 1 2)
   ,#+end_src"
         (org-mode-restart)
         (forward-line 2)
         (org-babel-view-src-block-info)))
#+END_SRC

Then do ` M-x ert RET t RET' and a window should pop up showing that
you either passed (with your patch) or failed (without your patch) 1
test.

If that much works, then submit a patch for testing/lisp/test-ob.el.

HTH,

Chuck

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Nicolas Goaziou]

Rainer M Krug <Rainer@krugs.de> writes:

> I think I will skip the bonus points this time - sorry.

OK. You may also send me a couple of ECM, so I can turn them into tests.

> I would be very grateful if you could submit the patch without a test.

Applied. Thank you.


Regards.

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Rainer M Krug]

[-- Attachment #1: Type: text/plain, Size: 497 bytes --]

Nicolas Goaziou <mail@nicolasgoaziou.fr> writes:

> Rainer M Krug <Rainer@krugs.de> writes:
>
>> I think I will skip the bonus points this time - sorry.
>
> OK. You may also send me a couple of ECM, so I can turn them into tests.

Sorry - what do you mean by ECM?

>
>> I would be very grateful if you could submit the patch without a test.
>
> Applied. Thank you.

Thanks,

Rainer

>
>
> Regards.
>
>

-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Sebastien Vauban]

Rainer M Krug wrote:
> what do you mean by ECM?

http://orgmode.org/worg/org-faq.html#ecm

Best regards,
  Seb

-- 
Sebastien Vauban

Re: [PATCH]: BUG fix and Add header-args property to source block info

[Rainer M Krug]

[-- Attachment #1: Type: text/plain, Size: 338 bytes --]

Sebastien Vauban <sva-news-D0wtAvR13HarG/iDocfnWg@public.gmane.org>
writes:

> Rainer M Krug wrote:
>> what do you mean by ECM?
>
> http://orgmode.org/worg/org-faq.html#ecm

Ah - learned something.

Merci beaucoup,

Rainer

>
> Best regards,
>   Seb

-- 
Rainer M. Krug
email: Rainer<at>krugs<dot>de
PGP: 0x0F52F982

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]