Re: [babel] [bug] inline src_R breaks downstream src block

["Charles C. Berry" <ccberry@ucsd.edu>]

On Sun, 21 Aug 2011, Eric Schulte wrote:

> I've just pushed up a change to org-exp-blocks which should fix Charles'
> original problem related to conflict between inline and regular code
> blocks.  Please let me know if this problem persists in the latest git
> HEAD.

Just updated to

Org-mode version 7.7 (release_7.7.167.gfceb.dirty)

And I get

[...]
Code block evaluation complete.
if: Args out of range: -1, -1

after typing C-c C-e A RET y

:-(

Chuck

>
> Thanks -- Eric
>
> Eric Schulte <schulte.eric@gmail.com> writes:
>
>> Bastien <bzg@altern.org> writes:
>>
>>> Hi Charles,
>>>
>>> yes, there are some problems with parsing inline source blocks.
>>> Stephen also reported that these colon lines
>>>
>>>   : were $\beta_2$ = src_R{round(out3$coef[3], 4)}
>>>   : and $\beta_3$ = src_R{round(out3$coef[4], 4)}
>>>
>>> where not exporting correctly... Eric, can you have a look at
>>> these problems?
>>>
>>> Thanks!
>>>
>>
>> It will probably be a couple of days before I have sufficient time to
>> address these issues, but rest assured it is only my TODO list.
>>
>> Thanks -- Eric
>>
>>>
>>> "Charles C. Berry" <ccberry@ucsd.edu> writes:
>>>
>>>> ,----
>>>> | | * inline code block example
>>>> | | | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>>>> | blah blah src_R[:results output]{cat(rnorm(2))}
>>>> | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>>>> | #+begin_src R :eval never :exports none
>>>> | 1+2
>>>> | a <- b + c
>>>> | xyz
>>>> | #+end_src
>>>> | DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
>>>> `----
>>>>
>>>>
>>>> When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
>>>>
>>>> When I run C-c C-e L y, I get a buffer that ends like this:
>>>>
>>>> ----
>>>> | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>>>> | blah blah  \texttt{-1.172165 -0.5324113}
>>>> | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>>>> | \begin{src}R DDDDDDDDDDDDDDDDDDDDDDDDDDD
>>>> | | \end{document}
>>>> `----
>>>>
>>>> More complicated examples exhibit other problems, I speculate that
>>>> parsing the inline src_R and setting up to find the next
>>>> #+begin_src...#+end_src instance is what has gone wrong.
>>>>
>>>> FWIW, changing the :exports header to 'code' seems to give correct
>>>> results
>>>>
>>>> Also, placing a dummy example like this:
>>>>
>>>> ,----
>>>> | #+begin_example
>>>> | #+end_example
>>>> `----
>>>>
>>>> after the  src_R line produces correct results.
>>>>
>>>> Chuck
>>>>
>>>>
>>>> Charles C. Berry                            Dept of Family/Preventive Medicine
>>>> cberry@tajo.ucsd.edu			    UC San Diego
>>>> http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901
>>>>
>>>>
>>>>
>>>>
>
> -- 
> Eric Schulte
> http://cs.unm.edu/~eschulte/
>

Charles C. Berry                            Dept of Family/Preventive Medicine
cberry@tajo.ucsd.edu			    UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901