Re: jabref like orgmode based solution to bibliography management (not for latex)

[Xebar Saram <zeltakc@gmail.com>]

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Hi Guys

I have no clue why i had the issue before but after an emacs restart Johns
code snippet does work :D

thanks again guys, really appreciate your help as always

kind regards

Z

On Sat, Dec 5, 2015 at 8:04 PM, Titus von der Malsburg <malsburg@posteo.de>
wrote:

>
> John’s code should do the trick.  I don’t see how this could possibly
> cause your problems with the action menu.  The change should be
> completely transparent for Helm.
>
> Regarding your other question: I don’t see any disadvantages of using
> several BibTeX files but I also don’t see an advantage because
> helm-bibtex gives you all you need to select your own publications with
> just a few key strokes.  If helm-bibtex’ search does not work well in
> your case (perhaps another author has the same name as you), I would
> suggest using tags to mark your own publications:
>
>   https://github.com/tmalsburg/helm-bibtex#tagging-publications
>
> Titus
>
>
> On 2015-12-05 Sat 05:31, John Kitchin wrote:
> > I cannot reproduce that, and it shouldn't have any effect. Maybe
> > something else is going on.
> >
> >>
> >> Thanks for the quick answer. this does seem to work but as a side effect
> >> seems to break the TAB key to select action
> >> the message window shows:
> >>
> >> helm-select-nth-action: Nothing is selected
> >> No Actions available [8 times]
> >>
> >> thx again
> >>
> >> Z
> >>
> >> On Sat, Dec 5, 2015 at 3:05 PM, John Kitchin <jkitchin@andrew.cmu.edu>
> >> wrote:
> >>
> >>> Try (untested)
> >>>
> >>>
> >>>
> >>>
> >>>
> >>> John
> >>>
> >>> -----------------------------------
> >>> Professor John Kitchin
> >>> Doherty Hall A207F
> >>> Department of Chemical Engineering
> >>> Carnegie Mellon University
> >>> Pittsburgh, PA 15213
> >>> 412-268-7803
> >>> @johnkitchin
> >>> http://kitchingroup.cheme.cmu.edu
> >>>
> >>>
> >>> On Sat, Dec 5, 2015 at 7:17 AM, Xebar Saram <zeltakc@gmail.com> wrote:
> >>>
> >>>> Hi again Titus and list
> >>>>
> >>>> so the semester is finally nearing the end which means i finally have
> >>>> some time (and a life :)) to get back to what i partially started a
> few
> >>>> months ago.
> >>>>
> >>>> i have a question regarding Predefined searches. i have a search that
> >>>> works well for searching papers i authored.
> >>>> i am thinking of moving towards 2 bib files instead of 1 big one,
> that is
> >>>> one for my papers and one for the rest (any disadvantages of using 2
> bib
> >>>> files?).
> >>>> i want to add in the Predefined search to only draw from my file
> (mypaper.bib),
> >>>> even though in the default helm-bibtex sources it will have 2 inputs.
> is
> >>>> such a thing possible?
> >>>>
> >>>> this is how a current search i have looks like
> >>>>
> >>>> #+BEGIN_SRC emacs-lisp :results none
> >>>>
> >>>>  ;; Define helm-search with predefined search expression:
> >>>>  (defun helm-bibtex-ikloog-publications ()
> >>>>    "Search BibTeX entries authored by me"
> >>>>    (interactive)
> >>>>    (helm :sources '(helm-source-bibtex)
> >>>>          :full-frame t
> >>>>          :input "kloog !unpublished !prep "
> >>>>          :candidate-number-limit 500))
> >>>> #+END_SRC
> >>>>
> >>>> how does one add the specific .bib file filter?
> >>>>
> >>>> best
> >>>>
> >>>> Z
> >>>>
> >>>> On Sun, May 31, 2015 at 7:23 PM, Titus von der Malsburg <
> >>>> malsburg@posteo.de> wrote:
> >>>>
> >>>>>
> >>>>> On 2015-05-31 Sun 03:01, Xebar Saram wrote:
> >>>>> > Thanks so much everyone for these great replies. i will investigate
> >>>>> this
> >>>>> > further today and let everyone know how im going with my
> transition :)
> >>>>> >
> >>>>> > thanks again
> >>>>> >
> >>>>> > PS: Titus, do you think  that the helm-bibtex APA style reference
> list
> >>>>> > could be user customizable in the future?
> >>>>>
> >>>>> Depends on what you mean by customizable.  If you mean a
> customization
> >>>>> option to allows you to replace the function for APA formatting with
> >>>>> another function, then yes that would definitely make sense.
> >>>>>
> >>>>>   Titus
> >>>>>
> >>>>> >
> >>>>> > Z.
> >>>>> >
> >>>>> > On Sat, May 30, 2015 at 6:56 PM, John Kitchin <
> jkitchin@andrew.cmu.edu
> >>>>> >
> >>>>> > wrote:
> >>>>> >
> >>>>> >>
> >>>>> >>
> >>>>> >> On Saturday, May 30, 2015, Titus von der Malsburg <
> malsburg@posteo.de
> >>>>> >
> >>>>> >> wrote:
> >>>>> >>
> >>>>> >>>
> >>>>> >>> On 2015-05-30 Sat 01:20, Xebar Saram wrote:
> >>>>> >>> > Hi all
> >>>>> >>> >
> >>>>> >>> > i have been using jabref for the past 2-4 years in my academia
> >>>>> work to
> >>>>> >>> > manage my reference library. i dont use latex (..its on my TODO
> >>>>> >>> list...when
> >>>>> >>> > (f ever) i have time..) so for now i just want something to
> manage
> >>>>> my
> >>>>> >>> > references. the key things i need to move over from jabref are:
> >>>>> >>>
> >>>>> >>> Author of helm-bibtex here.
> >>>>> >>>
> >>>>> >>> > 1. easy add references
> >>>>> >>>
> >>>>> >>> Helm-bibtex doesn’t deal with this because I prefer to edit my
> BibTeX
> >>>>> >>> file by hand.  BibTeX retrieved from journals is almost always
> messy
> >>>>> and
> >>>>> >>> I need to edit it anyway.  It’s not too hard, though: I click on
> >>>>> BibTeX
> >>>>> >>> export on the journal page, the BibTeX file is opened in Emacs,
> I fix
> >>>>> >>> it, and use a command that appends it to my bibliography.
> >>>>> >>>
> >>>>> >>> However, I think org-ref has tools that do more to support
> importing
> >>>>> new
> >>>>> >>> entries and org-ref combines well with helm-bibtex.
> >>>>> >>
> >>>>> >>
> >>>>> >> Org-ref has doi-utils that let you add bibtex entries and download
> >>>>> PDFs
> >>>>> >> from a doi or crossref query.
> >>>>> >>
> >>>>> >>
> >>>>> >>>
> >>>>> >>> > 2. a way to quick filter references (helm bibtex seems like a
> good
> >>>>> >>> solution)
> >>>>> >>>
> >>>>> >>> That’s what helm-bibtex was written to solve.
> >>>>> >>>
> >>>>> >>> > 3. filter lists based on tags/keywords (orgmode has that
> covered)
> >>>>> >>>
> >>>>> >>> In helm-bibtex you can also search for keywords and tags.
> >>>>> >>>
> >>>>> >>> > 4. this one is important: a way to quickly export selected
> >>>>> references in
> >>>>> >>> > word/odf/html based on a pre fixed style (ie  Nature, Chicago
> etc)
> >>>>> >>>
> >>>>> >>> helm-bibtex can generate references in APA style but as far as I
> can
> >>>>> see
> >>>>> >>> Chicago style is very similar, so it shouldn’t be hard to add
> support
> >>>>> >>> for that.
> >>>>> >>>
> >>>>> >>> > anyone uses such a system in emacs/org and can recommend the
> way to
> >>>>> >>> > go?
> >>>>> >>>
> >>>>> >>> For more details, see: https://github.com/tmalsburg/helm-bibtex
> >>>>> >>>
> >>>>> >>>   Titus
> >>>>> >>>
> >>>>> >>>
> >>>>> >>
> >>>>> >> --
> >>>>> >> John
> >>>>> >>
> >>>>> >> -----------------------------------
> >>>>> >> Professor John Kitchin
> >>>>> >> Doherty Hall A207F
> >>>>> >> Department of Chemical Engineering
> >>>>> >> Carnegie Mellon University
> >>>>> >> Pittsburgh, PA 15213
> >>>>> >> 412-268-7803
> >>>>> >> @johnkitchin
> >>>>> >> http://kitchingroup.cheme.cmu.edu
> >>>>> >>
> >>>>> >>
> >>>>> >>
> >>>>>
> >>>>>
> >>>>
> >>>
>
>

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