From mboxrd@z Thu Jan 1 00:00:00 1970 From: Andreas Kiermeier Subject: Re: Problem with org-ref Date: Thu, 24 Dec 2015 10:26:53 +1030 Message-ID: References: <9B7FD49A-1A5F-42D3-9D9F-72BB151AF28C@gmail.com> Mime-Version: 1.0 Content-Type: multipart/alternative; boundary=001a11c117765a91240527997c47 Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:54719) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1aBtHj-0002Rt-Pm for emacs-orgmode@gnu.org; Wed, 23 Dec 2015 18:57:37 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1aBtHi-0007tg-8E for emacs-orgmode@gnu.org; Wed, 23 Dec 2015 18:57:35 -0500 Received: from mail-qg0-x232.google.com ([2607:f8b0:400d:c04::232]:33725) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1aBtHi-0007tb-27 for emacs-orgmode@gnu.org; Wed, 23 Dec 2015 18:57:34 -0500 Received: by mail-qg0-x232.google.com with SMTP id k90so164700909qge.0 for ; Wed, 23 Dec 2015 15:57:33 -0800 (PST) In-Reply-To: List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: John Kitchin Cc: marvin doyley , "emacs-orgmode@gnu.org" --001a11c117765a91240527997c47 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Hi John, similar doi problem here. My configuration is: - Windows 10 - GNU Emacs 24.5.1 (i686-pc-mingw32) of 2015-04-11 on LEG570 - Miktex (up-to-date) with pdftotext v0.32..0 - org-ref v 0.5.0 (from melpa) Running pdftotext from the command line works and produces a text file with doi info. Let me know what I can do to help to test things. Thanks. Andreas PS: Thank you for org-ref ... an awesome Xmas present! On 24 December 2015 at 08:00, John Kitchin wrote: > Thanks! Do you know if you have pdftotext working on your machine? The pd= f > drag-n-drop works by converting the pdf to text, and than matching a > pattern to find a doi. If none is found, you get the message you noted. T= he > url dnd works similarly, but there are a bunch of recipes for what to mat= ch > depending on the base of the url. > > I did that on a Mac, and I haven't tested it on a windows or Linux > machine. > > John > > ----------------------------------- > Professor John Kitchin > Doherty Hall A207F > Department of Chemical Engineering > Carnegie Mellon University > Pittsburgh, PA 15213 > 412-268-7803 > @johnkitchin > http://kitchingroup.cheme.cmu.edu > > > On Wed, Dec 23, 2015 at 4:22 PM, marvin doyley > wrote: > >> Hi John, >> >> I am playing with org-ref, the melpa version. >> >> Everything works fine except, one thing. When I drag a pdf to an empty >> bibtex file it doesn=E2=80=99t extract the doi ( no doi found in the fil= e:///). >> I tried it pdf you used in your video (Examples of Effective Data Shari= ng >> in Scientific Publishing), but I got the same error. Dragging the url to >> the bibtex file also doesn=E2=80=99t works for me. >> >> cheers, >> M >> >> PS by the way, your video was excellent :) >> > > --001a11c117765a91240527997c47 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Hi John,
simila= r doi problem here.
My configuration is:
  • Windows 10
  • GNU Emacs 24.= 5.1 (i686-pc-mingw32) of 2015-04-11 on LEG570
  • Miktex (up-to-date)= with pdftotext v0.32..0
  • org-ref v 0.5.0 (from melpa)
    • Running pdftotext from th= e command line works and produces a text file with doi info.
    Let me know what I can do to= help to test things.
Thanks.
Andreas
PS: Thank you for org-ref = ... an awesome Xmas present!


<= /div>
On 24 December 2015 at 08:00, J= ohn Kitchin <jkitchin@andrew.cmu.edu> wrote:
Thanks! Do you know if you have p= dftotext working on your machine? The pdf drag-n-drop works by converting t= he pdf to text, and than matching a pattern to find a doi. If none is found= , you get the message you noted. The url dnd works similarly, but there are= a bunch of recipes for what to match depending on the base of the url.
I did that on a Mac, and I haven't tested it on a windo= ws or Linux machine.=C2=A0

John

-----= ------------------------------
Professor John Kitchin=C2=A0
Doherty H= all A207F
Department of Chemical Engineering
Carnegie Mellon Universi= ty
Pittsburgh, PA 15213
412-268-7803
=

On Wed, Dec 23, 2015 at 4:22 PM, marvin doyl= ey <marvinpas@gmail.com> wrote:
Hi John,

I am playing wi= th org-ref, =C2=A0the melpa version.

Everything works fine except, o= ne thing.=C2=A0 When I drag a pdf to an empty bibtex file it doesn=E2=80=99= t extract the doi ( no doi found in the=C2=A0file:///). I tried it p= df you used =C2=A0in your video (Examples of Effective Data Sharing in Scie= ntific Publishing), but I got the same error. Dragging the url to the bibte= x file also doesn=E2=80=99t works for me.

cheers,
M

PS by the way, your video was excellent :)


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