Re: Flyspell causes severe slowdown when manipulating footnotes

[arozbiz@gmail.com]

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Thanks Ihor for the response. Unfortunately, setting
org-element--cache-self-verify to nil didn't work. Profile report attached.

On Wed, Dec 7, 2022 at 7:23 AM Ihor Radchenko <yantar92@posteo.net> wrote:

> arozbiz@gmail.com writes:
>
> > I just upgraded to Org 9.6 and I've noticed that having flyspell-mode
> > turned on causes very large slowdowns when adding or deleting footnotes
> in
> > an org file with lots of footnotes (e.g., more than 200, which is common
> > for the academic articles that I use org for). Any ideas for what might
> be
> > causing this?
>
> Most likely cache updates.
> Could you please (1) Set org-element--cache-self-verify to nil and see
> if things get back to normal; (2) If things are still slow after setting
> the variable, please run M-x profiler-start ... M-x profiler-report and
> share the data. See https://orgmode.org/list/87ee2nlslt.fsf@localhost.
>
> --
> Ihor Radchenko // yantar92,
> Org mode contributor,
> Learn more about Org mode at <https://orgmode.org/>.
> Support Org development at <https://liberapay.com/org-mode>,
> or support my work at <https://liberapay.com/yantar92>
>

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org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil] 118 [rx--translate-any rx--translate-form rx--translate rx--translate-or rx--translate-form rx--translate rx--translate-seq rx--translate-form rx--translate rx-to-string org-element--parse-generic-emphasis org-element-underline-parser org-element--object-lex org-element-context org--flyspell-object-check-p org-mode-flyspell-verify] 7 [rx--parse-any rx--translate-any rx--translate-form rx--translate rx--translate-or rx--translate-form rx--translate rx--translate-seq rx--translate-form rx--translate rx-to-string org-element--parse-generic-emphasis org-element-underline-parser org-element--object-lex org-element-context org--flyspell-object-check-p] 3 [rx--translate-form rx--translate rx--translate-seq rx--translate-form rx--translate rx-to-string org-element--parse-generic-emphasis org-element-italic-parser org-element--object-lex org-element-context org--flyspell-object-check-p org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil] 3 [flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil nil nil nil nil nil nil] 38 [org-at-heading-p org-back-to-heading org-back-to-heading-or-point-min org-get-property-block org--property-local-values org-entry-get-with-inheritance org-entry-get org-log-into-drawer org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil] 3 [org-element--cache-put org-element--parse-to org-element-at-point org-element-at-point-no-context org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil nil] 10 [org-element-entity-parser org-element--object-lex org-element-context org--flyspell-object-check-p org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil nil] 6 [org-element-headline-parser org-element--parse-to org-element-at-point org-element-at-point-no-context org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil nil] 12 [org-element-at-point org-element-at-point-no-context org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil nil nil nil] 34 [rx--bracket rx--atomic-regexp rx-to-string org-element-headline-parser org-element--parse-to org-element-at-point org-element-at-point-no-context org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil] 3 [org-element-paragraph-parser org-element--current-element org-element--parse-to org-element-at-point org-element-at-point-no-context org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil] 3 [org-get-limited-outline-regexp org-element--current-element org-element--parse-to org-element-at-point org-element-at-point-no-context org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil] 4 [derived-mode-p org-get-limited-outline-regexp org-element--current-element org-element--parse-to org-element-at-point org-element-at-point-no-context org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil] 4 [org-element-context org--flyspell-object-check-p org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil nil nil nil] 24 [rx--translate-group rx--translate-form rx--translate rx--translate-seq rx--translate-form rx--translate rx-to-string org-element--parse-generic-emphasis org-element-italic-parser org-element--object-lex org-element-context org--flyspell-object-check-p org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil] 3 [rx--translate-any rx--translate-form rx--translate "#<subr F616e6f6e796d6f75732d6c616d626461_anonymous_lambda_252>" mapcan rx--translate-or rx--translate-form rx--translate rx--translate-seq rx--translate-form rx--translate rx-to-string org-element--parse-generic-emphasis org-element-italic-parser org-element--object-lex org-element-context] 3 [replace-regexp-in-string org-element-headline-parser org-element--parse-to org-element-at-point org-element-at-point-no-context org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil] 4 [org-element-underline-parser org-element--object-lex org-element-context org--flyspell-object-check-p org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil nil nil nil] 3 [org-before-first-heading-p org-back-to-heading-or-point-min org-get-property-block org--property-local-values org-entry-get-with-inheritance org-entry-get org-log-into-drawer org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil] 7 [org-back-to-heading org-back-to-heading-or-point-min org-get-property-block org--property-local-values org-entry-get-with-inheritance org-entry-get org-log-into-drawer org-mode-flyspell-verify flyspell-word flyspell-post-command-hook nil nil nil nil nil nil] 3 [doom-modeline-icon doom-modeline-segment--time eval format-mode-line doom-modeline-format--main eval redisplay_internal\ \(C\ function\) nil nil nil nil nil nil nil nil nil] 3 [org-in-regexp org-in-verbatim-emphasis org-footnote-in-valid-context-p org-footnote-next-reference-or-definition org-activate-footnote-links font-lock-fontify-keywords-region font-lock-default-fontify-region font-lock-fontify-region "#<compiled -0x1562910c9d2d8703>" jit-lock--run-functions jit-lock-fontify-now jit-lock-function redisplay_internal\ \(C\ function\) nil nil nil] 4 [org-footnote-next-reference-or-definition org-activate-footnote-links font-lock-fontify-keywords-region font-lock-default-fontify-region font-lock-fontify-region "#<compiled -0x156298ff43a83703>" jit-lock--run-functions jit-lock-fontify-now jit-lock-function redisplay_internal\ \(C\ function\) nil nil nil nil nil nil] 3 [yascroll:make-thumb-overlays yascroll:show-scroll-bar-internal yascroll:show-scroll-bar yascroll:safe-show-scroll-bar yascroll:after-window-scroll redisplay_internal\ \(C\ function\) nil nil nil nil nil nil nil nil nil nil] 4 [if let while let let wc-format-modeline-string let wc-generate-modeline let* wc-mode-update setq progn if when "#<lambda 0x1bdc28c2>" apply] 4 [syntax-ppss show-paren--default show-paren-function apply timer-event-handler nil nil nil nil nil nil nil nil nil nil nil] 10 [file-truename file-truename file-truename file-truename file-truename org-roam-descendant-of-p org-roam-file-p org-roam-buffer-p if let azr/tab-bar-tab-name-current tab-bar-tabs tab-bar--current-tab-index doom-modeline-segment--workspace-name eval redisplay_internal\ \(C\ function\)] 3 [counsel-M-x funcall-interactively command-execute nil nil nil nil nil nil nil nil nil nil nil nil nil] 29 [ivy--reset-state "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil nil nil nil nil nil] 12 ["#<compiled 0x116411fe5fcf76e7>" all-completions ivy--reset-state "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil nil nil nil] 11 [all-completions ivy--reset-state "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil nil nil nil nil] 3 ["#<subr ivy-prescient-sort-function>" sort ivy--reset-state "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil nil nil nil] 20 ["#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil nil nil nil nil nil nil] 8 ["#<compiled 0x13d24e91da08977b>" mapcar easy-menu-get-map easy-menu-add-item easy-menu-change org-install-agenda-files-menu org-mode yankpad--file-elements yankpad--categories yankpad-local-category-to-major-mode run-hooks run-mode-hooks minibuffer-inactive-mode read-from-minibuffer "#<subr ivy-read>" apply] 4 [ivy-rich-format-column "#<compiled -0x1c95333557557b5a>" ivy-rich-format ivy-rich--counsel-M-x-transformer ivy--format ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil] 12 [read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil nil nil nil nil nil] 67 ["#<compiled 0x1cf6e70892d94720>" cl-delete cl-remove ivy--re-filter ivy--filter ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil] 234 [cl-remove ivy--re-filter ivy--filter ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil] 16 [cl--position cl-position ivy--recompute-index ivy--filter ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil] 4 [documentation ivy-rich-counsel-function-docstring ivy-rich-format-column "#<compiled -0x1c2bf6ae87d1ef89>" ivy-rich-format ivy-rich--counsel-M-x-transformer ivy--format ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively] 15 ["#<compiled 0x110d11bf6e7e1dc9>" ivy--format-minibuffer-line "#<compiled 0x4d6af82acb26e01>" mapcar ivy--wnd-cands-to-str ivy--format ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute] 10 [key-chord-lookup-key key-chord-input-method read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil nil nil nil] 3 [cl-delete cl-remove ivy--re-filter ivy--filter ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil] 20 [ivy-rich-counsel-function-docstring ivy-rich-format-column "#<compiled -0x1c9501fc49641b5a>" ivy-rich-format ivy-rich--counsel-M-x-transformer ivy--format ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute] 4 [ivy-format-function-default ivy--wnd-cands-to-str ivy--format ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil] 3 ["#<subr F616e6f6e796d6f75732d6c616d626461_anonymous_lambda_9>" ivy-prescient-re-builder ivy--filter ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil] 3 [ivy--re-filter ivy--filter ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil] 1 ["#<compiled 0x4d6af82acb26e01>" mapcar ivy--wnd-cands-to-str ivy--format ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil] 3 ["#<compiled 0xe038af2db688220>" prescient-initials-regexp "#<compiled -0xd3a0ee15209d4b3>" mapcar "#<compiled 0xc9c7da72640b9ab>" prescient-filter-regexps ivy-prescient-re-builder ivy-set-text ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively] 4 ["#<compiled -0x1c8ce28d9dc98a33>" substitute-command-keys documentation ivy-rich-counsel-function-docstring ivy-rich-format-column "#<compiled 0xa595a4799184446>" ivy-rich-format ivy-rich--counsel-M-x-transformer ivy--format ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read] 3 ["#<compiled -0x6168eee8b10d129>" cl-remove ivy--re-filter ivy--filter ivy--update-minibuffer ivy--exhibit ivy--queue-exhibit read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil] 2 [easy-menu-get-map easy-menu-add-item easy-menu-change org-install-agenda-files-menu org-mode yankpad--file-elements yankpad--categories yankpad-local-category-to-major-mode run-hooks run-mode-hooks minibuffer-inactive-mode read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x] 5 [yankpad--categories yankpad-local-category-to-major-mode run-hooks run-mode-hooks minibuffer-inactive-mode read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil] 3 [org-element--current-element org-element--parse-elements org-element--parse-elements org-element--parse-elements org-element-parse-buffer yankpad--file-elements yankpad--categories yankpad-local-category-to-major-mode run-hooks run-mode-hooks minibuffer-inactive-mode read-from-minibuffer "#<subr ivy-read>" apply ivy-read counsel-M-x] 3 [funcall-interactively command-execute counsel-M-x-action "#<compiled -0x18f9513b23fbfb80>" ivy-call "#<subr ivy-read>" apply ivy-read counsel-M-x funcall-interactively command-execute nil nil nil nil nil] 7 [Automatic\ GC] 437)) (25489 60701 873247 126000) nil]