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List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+larch=yhetil.org@gnu.org Sender: emacs-orgmode-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1674015899; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:mime-version:mime-version: content-type:content-type:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=KWSgj+zlcR9FNtecZFfgfY94rjPssGfw+oMWIKnMatE=; b=Ysh1YZBNJINcu+zaLnzi6X/NEKXai4ifqomjzsr3l/ATwTbXQGr5JoMyZ/GyTigqU7wbgm oZTc0QBafOVCXL+6pj0wtZV+S7kYsudDUOEsvE/BZF5JMvQ+NpnCzAjb9PvpGATYO1KnR9 t4kixNp+C8Pf0EDQrCHk7yT9sWRWMQg8ZFESZuttK4wTBP+QfHA1B0jbE5lkRuvwzyRfe0 aoXucv7vlraM7WYsjX39y0w7mdSjMqKhH5sDRUodRjOiCfpTnSKZuvZJRU44VcCKdVf06u Z2UN1cOOY8AeUOGkD7Y0fiiEHVI4XG5fCcnFrhXy4RA28Mms2A9rPLDzeHP6fg== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20210112 header.b=DiFNDI4z; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of "emacs-orgmode-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="emacs-orgmode-bounces+larch=yhetil.org@gnu.org" ARC-Seal: i=1; s=key1; d=yhetil.org; t=1674015899; a=rsa-sha256; cv=none; b=QDEbLiFjBD6QVlCwDkqm9TwIbNA3+3Kj9FYizCbvtNX4a5gNNO+4YHPSpVDuYXDmTNjnk8 /zQq4xSKAZLNXWJZBPKnruOB+VqGgJdcrsghhrN9GRT303fXNPwag0LKvnXEfZEQEY3kxE 1yZ/JRS9S9ALH1up6CppjeXz9bbOPkJ/woefyZiKIKuX24tpOMtYbCpI0Jx/nHKkfus8N0 Qq6kMf334/WL/LDlcgI4WxH25MmPwP+AgMRFCTs7v/uZNzsD/J1XWnLgLaQs8tNlM0PJ0X gIX1eIKFCpVxDd5MMeBpcykB9mZeX8+L1WuxwSZLIO5pbxGbsqdWya3hNs2KLw== X-Migadu-Scanner: scn1.migadu.com X-Migadu-Spam-Score: -5.29 X-Spam-Score: -5.29 X-Migadu-Queue-Id: D97ED4722E Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20210112 header.b=DiFNDI4z; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of "emacs-orgmode-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="emacs-orgmode-bounces+larch=yhetil.org@gnu.org" X-TUID: xhZU5lDCzruD --0000000000001de9c305f2509eef Content-Type: text/plain; charset="UTF-8" *Expected behaviour*: All lines of the shell block should be evaluated, with full output printed. *Actual behaviour*: All lines but the last are evaluated, the output ends with 'More?' instead of the last command's output. *Steps to reproduce*: In Windows, start a clean Emacs instance (I used "runemacs.exe -Q"), and evaluate the following blocks: 1) Enable shell language support #+begin_src elisp (org-babel-do-load-languages 'org-babel-load-languages '( (shell . t) ) ) #+end_src #+RESULTS: 2) Evaluate this shell code block #+begin_src shell echo 1 echo 2 #+end_src #+RESULTS: | Microsoft | Windows | [Version | 10.0.19044.2364] | | | | (c) | Microsoft | Corporation. | All | rights | reserved. | | | | | | | | | c:\Users\osherj>echo | 1 | | | | | | 1 | | | | | | | | | | | | | | c:\Users\osherj>More? | | | | | | *Additional info:* After some debugging, it seems to be caused by a missing newline character at the end of the code block content. I believe this is caused by the org-trim function which is called upon the body of the block. At the function: org/ob-shell.el -> (defun org-babel-sh-evaluate ...) The line: (org-babel-eval shell-file-name (org-trim body)) What led me to this conclusion, is because I've found that the function "shell-command-on-region" (and I'm guessing its babel counterpart - "org-babel--shell-command-on-region"), produces the same behaviour if the region does not include a newline at its end. Note: The bug seems to be reproducible in Emacs 28.2 as well *Suggested fix*: The hacky way I solved it was to change this line: (t (org-babel-eval shell-file-name (org-trim body)))))) to this: (t (org-babel-eval shell-file-name (concat (org-trim body) "\n")))))) Let me know if there's any other information you need, or if I can help in any other way. Thanks! Osher Emacs : GNU Emacs 28.1 (build 52, x86_64-w64-mingw32) of 2022-04-04 Package: Org mode version 9.5.2 (release_9.5.2-25-gaf6f12 @ c:/tools/emacs-28.1/share/emacs/28.1/lisp/org/) current state: ============== (setq org-link-elisp-confirm-function 'yes-or-no-p org-bibtex-headline-format-function #[257 "\300 \236A\207" [:title] 3 "\n\n(fn ENTRY)"] org-export-before-parsing-hook '(org-attach-expand-links) org-archive-hook '(org-attach-archive-delete-maybe) org-odt-format-inlinetask-function 'org-odt-format-inlinetask-default-function org-ascii-format-drawer-function #[771 " \207" [] 4 "\n\n(fn NAME CONTENTS WIDTH)"] org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers org-cycle-show-empty-lines org-optimize-window-after-visibility-change) org-mode-hook '(#[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-show-all append local] 5] #[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spec org-babel-hide-all-hashes) org-babel-load-languages '((shell . t)) org-latex-format-drawer-function #[514 "\207" [] 3 "\n\n(fn _ CONTENTS)"] org-latex-format-headline-function 'org-latex-format-headline-default-function org-confirm-shell-link-function 'yes-or-no-p org-html-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"] outline-isearch-open-invisible-function 'outline-isearch-open-invisible org-odt-format-headline-function 'org-odt-format-headline-default-function org-agenda-before-write-hook '(org-agenda-add-entry-text) org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) org-confirm-elisp-link-function 'yes-or-no-p org-speed-command-hook '(org-speed-command-activate org-babel-speed-command-activate) org-html-format-inlinetask-function 'org-html-format-inlinetask-default-function org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default org-odt-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"] org-latex-format-inlinetask-function 'org-latex-format-inlinetask-default-function org-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) org-link-shell-confirm-function 'yes-or-no-p org-babel-pre-tangle-hook '(save-buffer) org-agenda-loop-over-headlines-in-active-region nil org-occur-hook '(org-first-headline-recenter) org-metadown-hook '(org-babel-pop-to-session-maybe) org-link-parameters '(("attachment" :follow org-attach-follow :complete org-attach-complete-link) ("id" :follow org-id-open) ("eww" :follow org-eww-open :store org-eww-store-link) ("rmail" :follow org-rmail-open :store org-rmail-store-link) ("mhe" :follow org-mhe-open :store org-mhe-store-link) ("irc" :follow org-irc-visit :store org-irc-store-link :export org-irc-export) ("info" :follow org-info-open :export org-info-export :store org-info-store-link) ("gnus" :follow org-gnus-open :store org-gnus-store-link) ("docview" :follow org-docview-open :export org-docview-export :store org-docview-store-link) ("bibtex" :follow org-bibtex-open :store org-bibtex-store-link) ("bbdb" :follow org-bbdb-open :export org-bbdb-export :complete org-bbdb-complete-link :store org-bbdb-store-link) ("w3m" :store org-w3m-store-link) ("doi" :follow org-link-doi-open :export org-link-doi-export) ("file+sys") ("file+emacs") ("shell" :follow org-link--open-shell) ("news" :follow #[514 "\301\300\302 Q \"\207" ["news" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("mailto" :follow #[514 "\301\300\302 Q \"\207" ["mailto" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("https" :follow #[514 "\301\300\302 Q \"\207" ["https" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("http" :follow #[514 "\301\300\302 Q \"\207" ["http" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("ftp" :follow #[514 "\301\300\302 Q \"\207" ["ftp" browse-url ":"] 6 "\n\n(fn URL ARG)"]) ("help" :follow org-link--open-help :store org-link--store-help) ("file" :complete org-link-complete-file) ("elisp" :follow org-link--open-elisp)) org-html-format-headline-function 'org-html-format-headline-default-function org-metaup-hook '(org-babel-load-in-session-maybe) ) --0000000000001de9c305f2509eef Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Expected behaviour:
All lines of the = shell block should be evaluated, with full output printed.

Actual= behaviour:
All lines but the last are evaluated, the output ends wi= th 'More?'
instead of the last command's output.

S= teps to reproduce:
In Windows, start a clean Emacs instance (I used = "runemacs.exe -Q"), and evaluate the following blocks:

1) = Enable shell language support
#+begin_src elisp
(org-babel-do-load-la= nguages
=C2=A0 =C2=A0'org-babel-load-languages
=C2=A0 =C2=A0'= (
=C2=A0 =C2=A0 =C2=A0(shell . t)
=C2=A0 =C2=A0 =C2=A0)
=C2=A0 =C2= =A0)
#+end_src

#+RESULTS:


2) Evaluate this shell code= =C2=A0block
#+begin_src shell
=C2=A0 echo 1
=C2=A0 echo 2

<= br>#+end_src

#+RESULTS:
| Microsoft =C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0 =C2=A0 | Windows =C2=A0 | [Version =C2=A0 =C2=A0 | 10.0.19044.2364] = | =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 |
| (c= ) =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 | Microsof= t | Corporation. | All =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| ri= ghts | reserved. |
| =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0 =C2=A0 =C2=A0 =C2=A0 | =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 | =C2=A0 = =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0= =C2=A0 =C2=A0 =C2=A0 |
| c:\Users\osherj>echo =C2=A0| 1 =C2=A0 =C2= =A0 =C2=A0 =C2=A0 | =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0 = =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 |
| 1 =C2=A0 =C2=A0 = =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 | =C2=A0 =C2=A0 =C2= =A0 =C2=A0 =C2=A0 | =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0 = =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 |
| =C2=A0 =C2=A0 =C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 | =C2=A0 =C2=A0= =C2=A0 =C2=A0 =C2=A0 | =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| = =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2= =A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 |
| c:\Users\osher= j>More? | =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 | =C2=A0 =C2=A0 =C2=A0 =C2= =A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0| =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 |


Additional info:
After some debugging, it seems = to be caused by a missing newline character at the
end of the code block= content.
I believe this is caused by the=C2=A0org-trim function which = is called upon the body of the block.
At the function:
= org/ob-shell.el -> (defun org-babel-sh-evaluate ...)
The l= ine:
(org-babel-eval shell-file-name (org-trim body))

What led me to this conclusion, is because I've = found that the function "shell-command-on-region" (and I'm gu= essing=C2=A0its babel counterpart - "org-babel--shell-command-on-regio= n"), produces the same behaviour if the region does not include a newl= ine at its end.

Note: The bug seems to be reproducible = in Emacs 28.2 as well

Suggested fix:
Th= e hacky way I solved it was to change this line:
(t (org-babel-ev= al shell-file-name (org-trim body))))))
to this:
(t= (org-babel-eval shell-file-name (concat (org-trim body) "\n"))))= ))

Let me know if there's any other inform= ation you need, or if I can help in any other way.

=
Thanks!
Osher


Emacs =C2=A0: GNU= Emacs 28.1 (build 52, x86_64-w64-mingw32)
=C2=A0of 2022-04-04
Packag= e: Org mode version 9.5.2 (release_9.5.2-25-gaf6f12 @ c:/tools/emacs-28.1/s= hare/emacs/28.1/lisp/org/)

current state:
=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D
(setq
=C2=A0org-link-elisp-confirm-function = 9;yes-or-no-p
=C2=A0org-bibtex-headline-format-function #[257 "\300= \236A\207" [:title] 3 "\n\n(fn ENTRY)"]
=C2=A0org-export= -before-parsing-hook '(org-attach-expand-links)
=C2=A0org-archive-ho= ok '(org-attach-archive-delete-maybe)
=C2=A0org-odt-format-inlinetas= k-function 'org-odt-format-inlinetask-default-function
=C2=A0org-asc= ii-format-drawer-function #[771 " \207" [] 4 "\n\n(fn NAME C= ONTENTS WIDTH)"]
=C2=A0org-cycle-hook '(org-cycle-hide-archived= -subtrees org-cycle-hide-drawers org-cycle-show-empty-lines org-optimize-wi= ndow-after-visibility-change)
=C2=A0org-mode-hook '(#[0 "\300\3= 01\302\303\304$\207" [add-hook change-major-mode-hook org-show-all app= end local] 5] #[0 "\300\301\302\303\304$\207" [add-hook change-ma= jor-mode-hook org-babel-show-result-all append local] 5] org-babel-result-h= ide-spec org-babel-hide-all-hashes)
=C2=A0org-babel-load-languages '= ((shell . t))
=C2=A0org-latex-format-drawer-function #[514 "\207&qu= ot; [] 3 "\n\n(fn _ CONTENTS)"]
=C2=A0org-latex-format-headlin= e-function 'org-latex-format-headline-default-function
=C2=A0org-con= firm-shell-link-function 'yes-or-no-p
=C2=A0org-html-format-drawer-f= unction #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"]
= =C2=A0outline-isearch-open-invisible-function 'outline-isearch-open-inv= isible
=C2=A0org-odt-format-headline-function 'org-odt-format-headli= ne-default-function
=C2=A0org-agenda-before-write-hook '(org-agenda-= add-entry-text)
=C2=A0org-src-mode-hook '(org-src-babel-configure-ed= it-buffer org-src-mode-configure-edit-buffer)
=C2=A0org-confirm-elisp-li= nk-function 'yes-or-no-p
=C2=A0org-speed-command-hook '(org-spee= d-command-activate org-babel-speed-command-activate)
=C2=A0org-html-form= at-inlinetask-function 'org-html-format-inlinetask-default-function
= =C2=A0org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask= -default
=C2=A0org-odt-format-drawer-function #[514 "\207" [] = 3 "\n\n(fn NAME CONTENTS)"]
=C2=A0org-latex-format-inlinetask-= function 'org-latex-format-inlinetask-default-function
=C2=A0org-tab= -first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-arg-e= xpand)
=C2=A0org-link-shell-confirm-function 'yes-or-no-p
=C2=A0o= rg-babel-pre-tangle-hook '(save-buffer)
=C2=A0org-agenda-loop-over-h= eadlines-in-active-region nil
=C2=A0org-occur-hook '(org-first-headl= ine-recenter)
=C2=A0org-metadown-hook '(org-babel-pop-to-session-may= be)
=C2=A0org-link-parameters '(("attachment" :follow org-= attach-follow :complete org-attach-complete-link) ("id" :follow o= rg-id-open) ("eww" :follow org-eww-open :store org-eww-store-link= ) ("rmail" :follow org-rmail-open :store org-rmail-store-link) (&= quot;mhe" :follow org-mhe-open :store org-mhe-store-link)
=C2=A0= =C2=A0 =C2=A0 ("irc" :follow org-irc-visit :store org-irc-store-= link :export org-irc-export) ("info" :follow org-info-open :expor= t org-info-export :store org-info-store-link) ("gnus" :follow org= -gnus-open :store org-gnus-store-link)
=C2=A0 =C2=A0 =C2=A0 ("do= cview" :follow org-docview-open :export org-docview-export :store org-= docview-store-link) ("bibtex" :follow org-bibtex-open :store org-= bibtex-store-link) ("bbdb" :follow org-bbdb-open :export org-bbdb= -export :complete org-bbdb-complete-link :store org-bbdb-store-link)
= =C2=A0 =C2=A0 =C2=A0 ("w3m" :store org-w3m-store-link) ("doi= " :follow org-link-doi-open :export org-link-doi-export) ("file+s= ys") ("file+emacs") ("shell" :follow org-link--ope= n-shell) ("news" :follow #[514 "\301\300\302 Q \"\207&q= uot; ["news" browse-url ":"] 6 "\n\n(fn URL ARG)&q= uot;])
=C2=A0 =C2=A0 =C2=A0 ("mailto" :follow #[514 "\= 301\300\302 Q \"\207" ["mailto" browse-url ":"= ;] 6 "\n\n(fn URL ARG)"]) ("https" :follow #[514 "= \301\300\302 Q \"\207" ["https" browse-url ":"= ;] 6 "\n\n(fn URL ARG)"]) ("http" :follow #[514 "\= 301\300\302 Q \"\207" ["http" browse-url ":"]= 6 "\n\n(fn URL ARG)"])
=C2=A0 =C2=A0 =C2=A0 ("ftp&quo= t; :follow #[514 "\301\300\302 Q \"\207" ["ftp" br= owse-url ":"] 6 "\n\n(fn URL ARG)"]) ("help" = :follow org-link--open-help :store org-link--store-help) ("file" = :complete org-link-complete-file) ("elisp" :follow org-link--open= -elisp))
=C2=A0org-html-format-headline-function 'org-html-format-he= adline-default-function
=C2=A0org-metaup-hook '(org-babel-load-in-se= ssion-maybe)
=C2=A0)
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