From: Dylan Schwilk <dylan@schwilk.org> To: emacs-orgmode@gnu.org Subject: Help debugging R source code block output problem with :session Date: Fri, 28 Aug 2020 15:11:55 -0500 [thread overview] Message-ID: <87r1rqled0.fsf@havana> (raw) I returned to an org file this week and found that I am getting some strange source code block output for R code when I use the :session header. I have been able to duplicate this with a minimal init file. I strongly suspect it is some problem at my end but perhaps folks here can help me know here to look? It occurs with a minimal emacs initialization. First, here is a small org file example of the problem. In the second results block the ">" appears to be treated as a prompt line to strip from output but only when a session is started. This happens with any ">" in output when the :session header occurs. the problem is dramatic when printing tibbles where the column modes are enclosed in angle brackets. test.org >>> ** Test org babel R output prompt problem #+begin_src R :results output print("<X> <Y> <!>") print("one <two> three") print("end") #+end_src #+RESULTS: : [1] "<X> <Y> <!>" : [1] "one <two> three" : [1] "end" #+begin_src R :results output :session "NEW" print("<X> <Y> <!>") print("one <two> three") print("end") #+end_src #+RESULTS: : [1] "< : < : <!>" : [1] "one < : three" : [1] "end" <<< The second block produces the bad output. This occurs with a minimal setup. I start emacs with > emacs -Q -l "~/debugorg.el" where debugorg.el is: >> require 'package) add-to-list 'package-archives '("melpa" . "https://melpa.org/packages/") t) add-to-list 'package-archives '("org" . "https://orgmode.org/elpa/") t) package-initialize) require 'ess-site) (org-babel-do-load-languages 'org-babel-load-languages '((R . t))) << emacs version 26.3 org-mode version 9.3.7 ess version 18.10.3snapshot --
next reply other threads:[~2020-08-28 20:12 UTC|newest] Thread overview: 25+ messages / expand[flat|nested] mbox.gz Atom feed top 2020-08-28 20:11 Dylan Schwilk [this message] 2020-08-29 2:36 ` Jack Kamm 2020-08-29 4:07 ` Dylan Schwilk 2020-08-29 7:24 ` Jack Kamm 2020-08-29 20:35 ` Berry, Charles via General discussions about Org-mode. 2020-08-30 4:37 ` Dylan Schwilk 2020-08-30 15:08 ` Jack Kamm 2020-09-07 8:18 ` Jack Kamm 2020-09-07 8:45 ` Jack Kamm 2020-09-07 17:37 ` Berry, Charles via General discussions about Org-mode. 2020-09-07 20:07 ` Jack Kamm 2020-09-07 22:12 ` Berry, Charles via General discussions about Org-mode. 2020-09-08 1:06 ` Jack Kamm 2020-09-08 2:08 ` Berry, Charles via General discussions about Org-mode. 2020-09-08 14:51 ` Jack Kamm 2020-09-08 16:45 ` Berry, Charles via General discussions about Org-mode. 2020-09-08 17:41 ` Jack Kamm 2020-09-18 16:39 ` Dylan Schwilk 2020-10-28 13:13 ` Jack Kamm 2020-10-28 13:46 ` Jeremie Juste 2020-08-30 4:18 ` Dylan Schwilk 2021-05-03 8:53 ` Jeremie Juste 2022-01-11 23:36 John Hendy 2022-01-12 7:49 ` Jeremie Juste 2022-01-12 15:04 ` John Hendy
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