[BUG] Citations in tables are not exported

[BUG] Citations in tables are not exported

[Timothy]

Hi,

I've just started playing with citations, but it seems that I've
stumbled across a bug where if the citation is in a table cell it will
be left "raw". See the following example

#+begin_org
,#+begin_src bibtex :tangle activedoc.bib
@article{SchulteActiveOrg,
         author={Schulte, Eric and Davison, Dan},
         journal={Computing in Science Engineering},
         title={Active Documents with Org-Mode},
         year={2011},
         volume={13},
         number={3},
         pages={66-73},
         doi={10.1109/MCSE.2011.41}}
,#+end_src

,#+bibliography: activedoc.bib
,#+print_bibliography:

[cite/a:@SchulteActiveOrg]

| [cite/a:@SchulteActiveOrg] |
#+end_org

When exporting to ASCII, I see this:

#+begin_example
Schulte, Eric, and Dan Davison. 2011. “Active Documents with Org-Mode.”
/Computing in Science Engineering/ 13 (3):66–73.

(Schulte and Davison 2011)

━━━━━━━━━━━━━━━━━━━━━━━━━━━━
 [cite/a:@SchulteActiveOrg]
━━━━━━━━━━━━━━━━━━━━━━━━━━━━
#+end_example

I hope that's enough to go off.

--
Timothy

Re: [BUG] Citations in tables are not exported

[John Kitchin]

I also see this behavior. I think this should be considered a bug, it is
pretty common to see citations in a table cell.

Additionally, I cannot insert a citation in a caption that is above a
table (or a figure), I get
"user-error: Cannot insert a citation here". That should be considered a
bug in org-cite--allowed-p  I think. It fails because in the caption the
context is a table, and it has :post-affiliated item which causes
org-cite--allowed-p  to return nil.

If I put a citation in the caption anyway, it does seem to get exported
correctly.

I am not sure why the cites don't export inside the table cell though.

Thanks,

Timothy <tecosaur@gmail.com> writes:

> Hi,
>
> I've just started playing with citations, but it seems that I've
> stumbled across a bug where if the citation is in a table cell it will
> be left "raw". See the following example
>
> #+begin_org
> ,#+begin_src bibtex :tangle activedoc.bib
> @article{SchulteActiveOrg,
>          author={Schulte, Eric and Davison, Dan},
>          journal={Computing in Science Engineering},
>          title={Active Documents with Org-Mode},
>          year={2011},
>          volume={13},
>          number={3},
>          pages={66-73},
>          doi={10.1109/MCSE.2011.41}}
> ,#+end_src
>
> ,#+bibliography: activedoc.bib
> ,#+print_bibliography:
>
> [cite/a:@SchulteActiveOrg]
>
> | [cite/a:@SchulteActiveOrg] |
> #+end_org
>
> When exporting to ASCII, I see this:
>
> #+begin_example
> Schulte, Eric, and Dan Davison. 2011. “Active Documents with Org-Mode.”
> /Computing in Science Engineering/ 13 (3):66–73.
>
> (Schulte and Davison 2011)
>
> ━━━━━━━━━━━━━━━━━━━━━━━━━━━━
>  [cite/a:@SchulteActiveOrg]
> ━━━━━━━━━━━━━━━━━━━━━━━━━━━━
> #+end_example
>
> I hope that's enough to go off.


--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu
Pronouns: he/him/his

Re: [BUG] Citations in tables are not exported

[Matt Price]

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re: captions, a quick hack is to change line 1373 of oc.el to

((memq type '(nil paragraph keyword)))

This makes my life quite a bit easier.

No doubt this is a bit too broad, though I am not entirely clear on why
there are any restrictions at all on inserting cites.

On Sun, Jul 18, 2021 at 7:29 PM John Kitchin <jkitchin@andrew.cmu.edu>
wrote:

> I also see this behavior. I think this should be considered a bug, it is
> pretty common to see citations in a table cell.
>
> Additionally, I cannot insert a citation in a caption that is above a
> table (or a figure), I get
> "user-error: Cannot insert a citation here". That should be considered a
> bug in org-cite--allowed-p  I think. It fails because in the caption the
> context is a table, and it has :post-affiliated item which causes
> org-cite--allowed-p  to return nil.
>
> If I put a citation in the caption anyway, it does seem to get exported
> correctly.
>
> I am not sure why the cites don't export inside the table cell though.
>
> Thanks,
>
> Timothy <tecosaur@gmail.com> writes:
>
> > Hi,
> >
> > I've just started playing with citations, but it seems that I've
> > stumbled across a bug where if the citation is in a table cell it will
> > be left "raw". See the following example
> >
> > #+begin_org
> > ,#+begin_src bibtex :tangle activedoc.bib
> > @article{SchulteActiveOrg,
> >          author={Schulte, Eric and Davison, Dan},
> >          journal={Computing in Science Engineering},
> >          title={Active Documents with Org-Mode},
> >          year={2011},
> >          volume={13},
> >          number={3},
> >          pages={66-73},
> >          doi={10.1109/MCSE.2011.41}}
> > ,#+end_src
> >
> > ,#+bibliography: activedoc.bib
> > ,#+print_bibliography:
> >
> > [cite/a:@SchulteActiveOrg]
> >
> > | [cite/a:@SchulteActiveOrg] |
> > #+end_org
> >
> > When exporting to ASCII, I see this:
> >
> > #+begin_example
> > Schulte, Eric, and Dan Davison. 2011. “Active Documents with Org-Mode.”
> > /Computing in Science Engineering/ 13 (3):66–73.
> >
> > (Schulte and Davison 2011)
> >
> > ━━━━━━━━━━━━━━━━━━━━━━━━━━━━
> >  [cite/a:@SchulteActiveOrg]
> > ━━━━━━━━━━━━━━━━━━━━━━━━━━━━
> > #+end_example
> >
> > I hope that's enough to go off.
>
>
> --
> Professor John Kitchin
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> @johnkitchin
> http://kitchingroup.cheme.cmu.edu
> Pronouns: he/him/his
>
>

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Re: [BUG] Citations in tables are not exported

[Nicolas Goaziou]

Hello,

John Kitchin <jkitchin@andrew.cmu.edu> writes:

> I also see this behavior. I think this should be considered a bug, it is
> pretty common to see citations in a table cell.
>
> Additionally, I cannot insert a citation in a caption that is above a
> table (or a figure), I get
> "user-error: Cannot insert a citation here". That should be considered a
> bug in org-cite--allowed-p  I think. It fails because in the caption the
> context is a table, and it has :post-affiliated item which causes
> org-cite--allowed-p  to return nil.
>
> If I put a citation in the caption anyway, it does seem to get exported
> correctly.

Fixed. Thank you.

Regards,
-- 
Nicolas Goaziou

Re: [BUG] Citations in tables are not exported

[Nicolas Goaziou]

Hello,

Matt Price <moptop99@gmail.com> writes:

> No doubt this is a bit too broad, though I am not entirely clear on why
> there are any restrictions at all on inserting cites.

There are locations which can break the structure of the document.
Obviously, we can let users shoot themselves in the foot, but, OTOH,
a decent interface should prevent the most obvious issues.

WDYT?

Regards,
-- 
Nicolas Goaziou

Re: [BUG] Citations in tables are not exported

[John Kitchin]

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It is partially fixed for me. I can put a citation in all these places in a
cell (and in a caption),

| x  |
 ^^^

but not here

| x  |
    ^

In case this doesn't render quite right, the cell has two spaces after x,
and I can insert a citation on the first space, but not the second one (or
subsequent ones if they exist).

It still looks like the citation in a table doesn't export, e.g.
in

#+caption: in a caption [cite/t:@lin-2021-exper-theor]
| X [cite/t:@lin-2021-exper-theor] | test  |


the citation in the caption is exported (in latex), but not the one in the
cell.




John

-----------------------------------
Professor John Kitchin (he/him/his)
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu



On Thu, Jul 29, 2021 at 8:26 AM Nicolas Goaziou <mail@nicolasgoaziou.fr>
wrote:

> Hello,
>
> John Kitchin <jkitchin@andrew.cmu.edu> writes:
>
> > I also see this behavior. I think this should be considered a bug, it is
> > pretty common to see citations in a table cell.
> >
> > Additionally, I cannot insert a citation in a caption that is above a
> > table (or a figure), I get
> > "user-error: Cannot insert a citation here". That should be considered a
> > bug in org-cite--allowed-p  I think. It fails because in the caption the
> > context is a table, and it has :post-affiliated item which causes
> > org-cite--allowed-p  to return nil.
> >
> > If I put a citation in the caption anyway, it does seem to get exported
> > correctly.
>
> Fixed. Thank you.
>
> Regards,
> --
> Nicolas Goaziou
>

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Re: [BUG] Citations in tables are not exported

[Nicolas Goaziou]

Hello,

John Kitchin <jkitchin@andrew.cmu.edu> writes:

> It is partially fixed for me. I can put a citation in all these places in a
> cell (and in a caption),
>
> | x  |
>  ^^^
>
> but not here
>
> | x  |
>     ^
>
> In case this doesn't render quite right, the cell has two spaces after x,
> and I can insert a citation on the first space, but not the second one (or
> subsequent ones if they exist).

Fixed, too. Thank you.

> It still looks like the citation in a table doesn't export, e.g.
> in
>
> #+caption: in a caption [cite/t:@lin-2021-exper-theor]
> | X [cite/t:@lin-2021-exper-theor] | test  |
>
>
> the citation in the caption is exported (in latex), but not the one in the
> cell.

I cannot reproduce it. Do you still encounter it?

Regards,
-- 
Nicolas Goaziou

Re: [BUG] Citations in tables are not exported

[John Kitchin]

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It all looks good now! Thanks for the quick fix.

John

-----------------------------------
Professor John Kitchin (he/him/his)
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu



On Thu, Jul 29, 2021 at 3:26 PM Nicolas Goaziou <mail@nicolasgoaziou.fr>
wrote:

> Hello,
>
> John Kitchin <jkitchin@andrew.cmu.edu> writes:
>
> > It is partially fixed for me. I can put a citation in all these places
> in a
> > cell (and in a caption),
> >
> > | x  |
> >  ^^^
> >
> > but not here
> >
> > | x  |
> >     ^
> >
> > In case this doesn't render quite right, the cell has two spaces after x,
> > and I can insert a citation on the first space, but not the second one
> (or
> > subsequent ones if they exist).
>
> Fixed, too. Thank you.
>
> > It still looks like the citation in a table doesn't export, e.g.
> > in
> >
> > #+caption: in a caption [cite/t:@lin-2021-exper-theor]
> > | X [cite/t:@lin-2021-exper-theor] | test  |
> >
> >
> > the citation in the caption is exported (in latex), but not the one in
> the
> > cell.
>
> I cannot reproduce it. Do you still encounter it?
>
> Regards,
> --
> Nicolas Goaziou
>

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Re: [BUG] Citations in tables are not exported

[Matt Price]

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On Thu., Jul. 29, 2021, 8:30 a.m. Nicolas Goaziou, <mail@nicolasgoaziou.fr>
wrote:

> Hello,
>
> Matt Price <moptop99@gmail.com> writes:
>
> > No doubt this is a bit too broad, though I am not entirely clear on why
> > there are any restrictions at all on inserting cites.
>
> There are locations which can break the structure of the document.
> Obviously, we can let users shoot themselves in the foot, but, OTOH,
> a decent interface should prevent the most obvious issues.
>
> WDYT?
>

What I think is, I am far too ignorant to have an opinion. I defer entirely
to yours. Thanks so much for the caption fix, at present it's one of my
main uses for citations so the convenience win is substantial.


> Regards,
> --
> Nicolas Goaziou
>

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