[SOLVED] Re: Mouse-over on bibliographic citation

[Sharon Kimble <boudiccas@skimble.plus.com>]

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John Kitchin <jkitchin@andrew.cmu.edu> writes:

> Can you add this to your org-file, run it and tell me what the output is:
>
> #+BEGIN_SRC emacs-lisp
> (org-ref-find-bibliography)
> #+END_SRC
>
> Also run M-x org-ref to see what bibliography org-ref thinks it is
> using in that file. There were some recent changes to
> (org-ref-find-bibliography) that might be causing this problem.

--8<---------------cut here---------------start------------->8---
Bibliography
No bibliographystyle found.
Using these bibtex files: (/home/boudiccas/research/hair17/hair17.bib /home/boudiccas/research/age-and-trans/cancer/cancer.bib)
--8<---------------cut here---------------end--------------->8---

>
> Do you have a bibliography link in the file you are working in?
>

This is in a file called hair17.org and this is its bibliography
install -

--8<---------------cut here---------------start------------->8---
#+latex_header: \usepackage[backend=biber,style=authoryear,doi=true,hyperref=true,backref=true,backrefstyle=two,date=year,maxcitenames=3]{biblatex}
#+LATEX_HEADER: \addbibresource{/home/boudiccas/research/hair17/hair17.bib}
--8<---------------cut here---------------end--------------->8---

Right, I've sorted the problem out. Somehow I had various things that I
was building the pdf with, meaning #+latex_header:, which included a
reference to 'cancer.bib'. I thought that it was commented out, but when
I deleted all comments out latex_headers I've found that it is only
referencing hair17.bib as shown in this output.

--8<---------------cut here---------------start------------->8---
Bibliography
No bibliographystyle found.
Using these bibtex files: (/home/boudiccas/research/hair17/hair17.bib)
--8<---------------cut here---------------end--------------->8---

Sorry for all the hassle and noise that I've caused.

Sorry
Sharon.

>
> Sharon Kimble writes:
>
>> John Kitchin <jkitchin@andrew.cmu.edu> writes:
>>
>>> this is a bug in the current org-mode 9.0.8. You have to revert it to org 9.0.7 for now. It has been fixed, but I am not sure when it will show up.
>>
>> Thanks for this John.
>>
>> I can confirm that with today's release of 'org-mode plus contribs' the
>> desired over effect has returned, but with a caveat - its showing the
>> wrong bibliographic entry! I have this in my config file -
>>
>> --8<---------------cut here---------------start------------->8---
>> #+begin_src emacs-lisp
>> (require 'org-ref)
>> (setq reftex-default-bibliography '("~/research/death/death.bib"))
>>
>> ;; see org-ref for use of these variables
>> (setq org-ref-bibliography-notes "~/research/notes.org"
>>       org-ref-default-bibliography '("~/research/death/death.bib")
>>       org-ref-pdf-directory "~/research/death/pdfs")
>>
>> (setq bibtex-completion-bibliography "~/research/death/death.bib"
>>       bibtex-completion-library-path "~/research/death/pdfs"
>>       bibtex-completion-notes-path "~/research/death/helm-bibtex-notes")
>> #+end_src
>> [2016-09-20 Tue 04:15]
>> [2017-01-17 Tue 11:34]
>> --8<---------------cut here---------------end--------------->8---
>>
>> Going back to '(cite:0072)' the mouse-over now shows 'NHS, , /Ovarian
>> cancer/ (2015).', which is the reference in 'death.bib'!
>>
>> I'm using the exact same code-block as pre-the updated org-mode, and
>> I've restarted emacs, so I'm not sure what ought to be changed, if
>> anything, but I'm unhappy with what its now showing as its not correct.
>>
>> Do I need to revamp my code-block, and if so, how please?
>>
>> Thanks
>> Sharon.
>>
>>>
>>> On Wed, Jun 21, 2017 at 5:50 PM, Sharon Kimble <boudiccas@skimble.plus.com> wrote:
>>>
>>>     I've got this strange problem and I'm not sure when it started, possibly
>>>     when this new computer was first put to use last Friday afternoon with a
>>>     fresh install of Debian 9, or maybe before then, I'm not sure.
>>>
>>>     Anyway, whenever I mouse-over a bibliographic citation in an org-mode
>>>     document, it used to say for (cite:0072) '\Hair loss, 2015,
>>>     http://www.regrowth.com/hair-loss-articles/ \' but now just shows
>>>     'LINK:cite:0072'.
>>>
>>>     I am using 'org-ref' which is up to date, as is org-mode, and both from
>>>     ELPA.
>>>
>>>     This is what my bibliography item actually is -
>>>
>>>     --8<---------------cut here---------------start------------->8---
>>>     @Online{0072,
>>>      Title          = {Hair loss},
>>>      Author         = {regrowth},
>>>      Url           = {http://www.regrowth.com/hair-loss-articles/},
>>>      Year          = {2015}
>>>     }
>>>     --8<---------------cut here---------------end--------------->8---
>>>
>>>     So how can I regain my previous mouse-over abilities please?
>>>
>>>     Thanks
>>>     Sharon.
>>>     --
>>>     A taste of linux = http://www.sharons.org.uk
>>>     TGmeds = http://www.tgmeds.org.uk
>>>     DrugFacts = https://www.drugfacts.org.uk
>>>     Debian 9.0, fluxbox 1.3.5-2, emacs 25.1.1, org-mode 9.0.7
>>>
>
>
> --
> Professor John Kitchin
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> @johnkitchin
> http://kitchingroup.cheme.cmu.edu
>

-- 
A taste of linux = http://www.sharons.org.uk
TGmeds = http://www.tgmeds.org.uk
DrugFacts = https://www.drugfacts.org.uk  
Debian 9.0, fluxbox 1.3.5-2, emacs 25.1.1, org-mode 9.0.7

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